Playing_with_fonts_and_texts.Rmd

---
title: Playing with fonts and texts
author: Marcin Kosinski
output:
  html_document:
    mathjax:  default
    fig_caption:  true
    toc: true
    section_numbering: true
    css: ggsci.css
vignette: >
  %\VignetteEngine{knitr::rmarkdown}
  %\VignetteIndexEntry{Playing with fonts and texts}
---
```{r include = FALSE}
library(knitr)
opts_chunk$set(
	comment = "",
	fig.width = 12, 
	message = FALSE,
	warning = FALSE,
	tidy.opts = list(
		keep.blank.line = TRUE,
		width.cutoff = 150
		),
	options(width = 150),
	eval = TRUE
)
```

```{r}
library("survminer")
```


> This vignette covers changes between versions 0.2.4 and 0.2.5 for additional texts and fonts customization enabled for subtitles and captions.

# Survival plot 

## Basic

Compare the basic plot

```{r}
library("survival")
fit<- survfit(Surv(time, status) ~ sex, data = lung)

# Drawing survival curves
ggsurvplot(fit, data = lung)
```

## Customized

with the plot where every possible text on a `plot` is specified

```{r}
ggsurvplot(fit, data = lung,
   title = "Survival curves", subtitle = "Based on Kaplan-Meier estimates",
   caption = "created with survminer",
   font.title = c(16, "bold", "darkblue"),
   font.subtitle = c(15, "bold.italic", "purple"),
   font.caption = c(14, "plain", "orange"),
   font.x = c(14, "bold.italic", "red"),
   font.y = c(14, "bold.italic", "darkred"),
   font.tickslab = c(12, "plain", "darkgreen"))
```

# Risk table

Now allow `risk.table` to be displayed. 

## Basic

Please compare basic plot with a risk table

```{r}
ggsurvplot(fit, data = lung, risk.table = TRUE)
```

## Customized

with the plot where every possible text on a `plot` and `table` is specified

```{r}
ggsurvplot(fit, data = lung, 
   title = "Survival curves", subtitle = "Based on Kaplan-Meier estimates",
   caption = "created with survminer",
   font.title = c(16, "bold", "darkblue"),
   font.subtitle = c(15, "bold.italic", "purple"),
   font.caption = c(14, "plain", "orange"),
   font.x = c(14, "bold.italic", "red"),
   font.y = c(14, "bold.italic", "darkred"),
   font.tickslab = c(12, "plain", "darkgreen"),
   ########## risk table #########,
   risk.table = TRUE,
   risk.table.title = "Note the risk set sizes",
   risk.table.subtitle = "and remember about censoring.",
   risk.table.caption = "source code: website.com",
   risk.table.height = 0.45)
```


# ncens plot

Finally, allow `ncens.plot` to be displayed.

## Basic

Please compare basic plot with a risk table and a `ncens` plot

```{r, fig.height = 7.5, fig.width = 6}
ggsurvplot(fit, data = lung, risk.table = TRUE, ncensor.plot = TRUE)
```

## Customized

with the full customization

```{r, fig.height = 7.5, fig.width = 6}
ggsurvplot(fit, data = lung,
   title = "Survival curves", subtitle = "Based on Kaplan-Meier estimates",
   caption = "created with survminer",
   font.title = c(16, "bold", "darkblue"),
   font.subtitle = c(15, "bold.italic", "purple"),
   font.caption = c(14, "plain", "orange"),
   font.x = c(14, "bold.italic", "red"),
   font.y = c(14, "bold.italic", "darkred"),
   font.tickslab = c(12, "plain", "darkgreen"),
   ########## risk table #########,
   risk.table = TRUE,
   risk.table.title = "Note the risk set sizes",
   risk.table.subtitle = "and remember about censoring.",
   risk.table.caption = "source code: website.com",
   risk.table.height = 0.35,
   ncensor.plot = TRUE,
   ncensor.plot.title = "Number of censorings", 
   ncensor.plot.subtitle = "over the time.",
   ncensor.plot.caption = "data available at data.com",
   ncensor.plot.height = 0.35)
```



# Notes

- Note that you will probably need to extend the default risk table height and ncens plot height after those customizations.
- Distinct between `title` and `subtitle` for the `curve_plot` and `risk.table.title` and `risk.table.subtitle` for the `table` / `ncens.plot.title` and `ncens.plot.subtitle` for the `ncens`.
- Fonts are set simultaneously for the `curve_plot`, for the `table` and for the `ncens` parts. This might change in the future.