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.travis.yml
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.travis.yml
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language: python
python:
- "3.6"
- "3.5"
- "3.4"
- "2.7"
cache: pip
matrix:
fast_finish: true
# commands to install dependencies
install:
- python setup.py install
- git clone https://github.com/ewels/MultiQC_TestData.git test_data
- cd test_data
- mkdir empty_dir
# commands to run tests
script:
- python -m unittest discover
- multiqc data --ignore data/modules/
- multiqc --lint data/modules/
- multiqc --file-list data/special_cases/dir_list.txt
- multiqc --lint data/modules/ -m fastqc -f -d -dd 1 -i "Forced Report" -b "This command has lots of options" --filename custom_fn --no-data-dir
- multiqc --lint data/modules/ -f --flat --tag methylation --exclude clusterflow --ignore-samples ngi --fullnames --zip-data-dir -c ../multiqc_config_example.yaml
- multiqc -m star -o tests/multiqc_report_dev -t default_dev -k json --file-list data/special_cases/file_list.txt
- multiqc -f empty_dir
- multiqc -f data/modules/gatk/BaseRecalibrator/recal_data.table