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This is my proposal to refactor the extension system (and tags as a whole):
I've found this way of handling and working with extensions to be a much easier developer experience that maintains the desired flexibility with the extension system.
It also resolves issue 45.
Rather than tracking spans, the body is treated as a space delimited string array and an array of indices is maintained for each tag to replace the current tracking logic.
If you'd like to pursue this implementation, I can implement the same pattern for projects/contexts and add tests.