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coalsimdlg2.m
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function varargout = coalsimdlg2(varargin)
% COALSIMDLG2 M-file for coalsimdlg2.fig
% COALSIMDLG2, by itself, creates a new COALSIMDLG2 or raises the existing
% singleton*.
%
% H = COALSIMDLG2 returns the handle to a new COALSIMDLG2 or the handle to
% the existing singleton*.
%
% COALSIMDLG2('CALLBACK',hObject,eventData,handles,...) calls the local
% function named CALLBACK in COALSIMDLG2.M with the given input arguments.
%
% COALSIMDLG2('Property','Value',...) creates a new COALSIMDLG2 or raises the
% existing singleton*. Starting from the left, property value pairs are
% applied to the GUI before coalsimdlg2_OpeningFcn gets called. An
% unrecognized property name or invalid value makes property application
% stop. All inputs are passed to coalsimdlg2_OpeningFcn via varargin.
%
% *See GUI Options on GUIDE's Tools menu. Choose "GUI allows only one
% instance to run (singleton)".
%
% See also: GUIDE, GUIDATA, GUIHANDLES
% Edit the above text to modify the response to help coalsimdlg2
% Last Modified by GUIDE v2.5 25-Jun-2010 18:26:46
% Population Genetics and Evolution Toolbox (PGEToolbox)
% Author: James Cai
% (c) Texas A&M University
%
% $LastChangedDate: 2013-01-06 13:39:38 -0600 (Sun, 06 Jan 2013) $
% $LastChangedRevision: 331 $
% $LastChangedBy: jcai $
% Begin initialization code - DO NOT EDIT
gui_Singleton = 1;
gui_State = struct('gui_Name', mfilename, ...
'gui_Singleton', gui_Singleton, ...
'gui_OpeningFcn', @coalsimdlg2_OpeningFcn, ...
'gui_OutputFcn', @coalsimdlg2_OutputFcn, ...
'gui_LayoutFcn', [], ...
'gui_Callback', []);
if nargin && ischar(varargin{1})
gui_State.gui_Callback = str2func(varargin{1});
end
if nargout
[varargout{1:nargout}] = gui_mainfcn(gui_State, varargin{:});
else
gui_mainfcn(gui_State, varargin{:});
end
% End initialization code - DO NOT EDIT
% --- Executes just before coalsimdlg2 is made visible.
function coalsimdlg2_OpeningFcn(hObject, eventdata, handles, varargin)
% This function has no output args, see OutputFcn.
% hObject handle to figure
% eventdata reserved - to be defined in a future version of MATLAB
% handles structure with handles and user data (see GUIDATA)
% varargin command line arguments to coalsimdlg2 (see VARARGIN)
% Choose default command line output for coalsimdlg2
handles.output = hObject;
scrsz = get(0, 'ScreenSize');
pos_act = get(gcf, 'Position');
xr = scrsz(3) - pos_act(3);
xp = round(xr/2);
yr = scrsz(4) - pos_act(4);
yp = round(yr/2);
set(gcf, 'position', [xp, yp, pos_act(3), pos_act(4)]);
% Update handles structure
guidata(hObject, handles);
% This sets up the initial plot - only do when we are invisible
% so window can get raised using coalsimdlg2.
if strcmp(get(hObject, 'Visible'), 'off')
%plot(rand(5));
i_drawmodel(handles);
end
% UIWAIT makes coalsimdlg2 wait for user response (see UIRESUME)
% uiwait(handles.figure1);
% --- Outputs from this function are returned to the command line.
function varargout = coalsimdlg2_OutputFcn(hObject, eventdata, handles)
% varargout cell array for returning output args (see VARARGOUT);
% hObject handle to figure
% eventdata reserved - to be defined in a future version of MATLAB
% handles structure with handles and user data (see GUIDATA)
% Get default command line output from handles structure
varargout{1} = handles.output;
% --- Executes on button press in pushbuttonUpdate.
function pushbuttonUpdate_Callback(hObject, eventdata, handles)
% hObject handle to pushbuttonUpdate (see GCBO)
% eventdata reserved - to be defined in a future version of MATLAB
% handles structure with handles and user data (see GUIDATA)
axes(handles.axes1);
cla;
%popup_sel_index = get(handles.popupmenu1, 'Value');
%switch popup_sel_index
i_drawmodel(handles);
% --------------------------------------------------------------------
function FileMenu_Callback(hObject, eventdata, handles)
% hObject handle to FileMenu (see GCBO)
% eventdata reserved - to be defined in a future version of MATLAB
% handles structure with handles and user data (see GUIDATA)
% --------------------------------------------------------------------
function OpenMenuItem_Callback(hObject, eventdata, handles)
% hObject handle to OpenMenuItem (see GCBO)
% eventdata reserved - to be defined in a future version of MATLAB
% handles structure with handles and user data (see GUIDATA)
file = uigetfile('*.fig');
if ~isequal(file, 0)
open(file);
end
% --------------------------------------------------------------------
function PrintMenuItem_Callback(hObject, eventdata, handles)
% hObject handle to PrintMenuItem (see GCBO)
% eventdata reserved - to be defined in a future version of MATLAB
% handles structure with handles and user data (see GUIDATA)
printdlg(handles.figure1)
% --------------------------------------------------------------------
function CloseMenuItem_Callback(hObject, eventdata, handles)
% hObject handle to CloseMenuItem (see GCBO)
% eventdata reserved - to be defined in a future version of MATLAB
% handles structure with handles and user data (see GUIDATA)
selection = questdlg(['Close ', get(handles.figure1, 'Name'), '?'], ...
['Close ', get(handles.figure1, 'Name'), '...'], ...
'Yes', 'No', 'Yes');
if strcmp(selection, 'No')
return;
end
delete(handles.figure1)
% --- Executes on selection change in popupmenu1.
function popupmenu1_Callback(hObject, eventdata, handles)
% hObject handle to popupmenu1 (see GCBO)
% eventdata reserved - to be defined in a future version of MATLAB
% handles structure with handles and user data (see GUIDATA)
% Hints: contents = get(hObject,'String') returns popupmenu1 contents as cell array
% contents{get(hObject,'Value')} returns selected item from popupmenu1
popup_sel_index = get(handles.popupmenu1, 'Value');
switch popup_sel_index
case 1
case 2
modelSS = {'0.00 0.10 1.00 1.00', ...
'0.10 0.10 1.00 0.99', ...
'0.10 0.10 1.00 0.94', ...
'0.10 0.10 1.00 0.88', ...
'0.10 0.10 1.00 0.78', ...
'0.10 0.10 1.00 0.67', ...
'0.10 0.10 1.00 0.55', ...
'0.10 0.10 1.00 0.43', ...
'0.10 0.10 1.00 0.32', ...
'0.10 0.10 1.00 0.22', ...
'0.10 0.10 1.00 0.11', ...
'0.10 0.10 1.00 0.04', ...
'0.10 0.12 0.25 0.01', ...
'0.12 0.13 0.25 0.11', ...
'0.13 0.14 0.25 0.07', ...
'0.14 0.15 0.25 0.07', ...
'0.15 0.20 0.25 0.00', ...
'0.20 999 1.00 0.00'};
set(handles.edit1, 'String', modelSS);
case 3
modelBS = {'0.000 0.005 1.000 0.610', ...
'0.005 0.014 1.000 0.559', ...
'0.014 0.019 1.000 0.505', ...
'0.019 0.044 1.000 0.452', ...
'0.044 0.048 1.000 0.398', ...
'0.048 0.051 1.000 0.456', ...
'0.051 0.061 1.000 0.398', ...
'0.061 0.067 1.000 0.452', ...
'0.067 0.069 1.000 0.387', ...
'0.069 0.078 1.000 0.323', ...
'0.078 0.086 1.000 0.379', ...
'0.086 0.119 1.000 0.443', ...
'0.119 0.127 1.000 0.493', ...
'0.127 0.151 1.000 0.547', ...
'0.151 0.181 1.000 0.495', ...
'0.181 0.185 1.000 0.443', ...
'0.185 0.188 1.000 0.495', ...
'0.188 0.194 1.000 0.436', ...
'0.194 0.202 1.000 0.490', ...
'0.202 0.204 1.000 0.425', ...
'0.204 0.213 1.000 0.481', ...
'0.213 0.217 1.000 0.546', ...
'0.217 0.219 1.000 0.482', ...
'0.219 0.221 1.000 0.543', ...
'0.221 0.226 1.000 0.593', ...
'0.226 0.231 1.000 0.654', ...
'0.231 0.234 1.000 0.603', ...
'0.234 0.240 1.000 0.536', ...
'0.240 0.244 1.000 0.473', ...
'0.244 0.250 1.000 0.535', ...
'0.250 0.255 1.000 0.480', ...
'0.255 0.259 1.000 0.429', ...
'0.259 0.264 1.000 0.479', ...
'0.264 0.266 1.000 0.530', ...
'0.266 0.270 1.000 0.477', ...
'0.270 0.271 1.000 0.535', ...
'0.271 0.275 1.000 0.482', ...
'0.275 0.277 1.000 0.535', ...
'0.277 0.278 1.000 0.594', ...
'0.278 0.292 1.000 0.541', ...
'0.292 0.295 1.000 0.593', ...
'0.295 0.305 1.000 0.542', ...
'0.305 0.310 1.000 0.599', ...
'0.310 0.312 1.000 0.547', ...
'0.312 0.316 1.000 0.495', ...
'0.316 0.322 1.000 0.442', ...
'0.322 0.326 1.000 0.389', ...
'0.326 0.331 1.000 0.325', ...
'0.331 0.338 1.000 0.375', ...
'0.338 0.350 1.000 0.432', ...
'0.350 0.353 1.000 0.485', ...
'0.353 0.361 1.000 0.539', ...
'0.361 0.374 1.000 0.488', ...
'0.374 0.377 1.000 0.547', ...
'0.377 0.391 1.000 0.495', ...
'0.391 0.405 1.000 0.443', ...
'0.405 0.411 1.000 0.385', ...
'0.411 0.414 1.000 0.334', ...
'0.414 0.419 1.000 0.384', ...
'0.419 0.421 1.000 0.319', ...
'0.421 0.422 1.000 0.373', ...
'0.422 0.429 1.000 0.427', ...
'0.429 0.447 1.000 0.377', ...
'0.447 0.449 1.000 0.430', ...
'0.449 0.450 1.000 0.486', ...
'0.450 0.467 1.000 0.433', ...
'0.467 0.471 1.000 0.496', ...
'0.471 0.472 1.000 0.549', ...
'0.472 0.477 1.000 0.603', ...
'0.477 0.479 1.000 0.548', ...
'0.479 0.488 1.000 0.601', ...
'0.488 0.489 1.000 0.545', ...
'0.489 0.490 1.000 0.495', ...
'0.490 0.493 1.000 0.440', ...
'0.493 0.506 1.000 0.493', ...
'0.506 0.509 1.000 0.550', ...
'0.509 0.510 1.000 0.602', ...
'0.510 0.517 1.000 0.550', ...
'0.517 0.522 1.000 0.499', ...
'0.522 0.528 1.000 0.445', ...
'0.528 0.531 1.000 0.496', ...
'0.531 0.536 1.000 0.558', ...
'0.536 0.541 1.000 0.616', ...
'0.541 0.560 1.000 0.561', ...
'0.560 0.562 1.000 0.496', ...
'0.562 0.564 1.000 0.440', ...
'0.564 0.566 1.000 0.373', ...
'0.566 0.574 1.000 0.437', ...
'0.574 0.576 1.000 0.492', ...
'0.576 0.587 1.000 0.546', ...
'0.587 0.590 1.000 0.603', ...
'0.590 0.594 1.000 0.549', ...
'0.594 0.600 1.000 0.495', ...
'0.600 0.605 1.000 0.547', ...
'0.605 0.612 1.000 0.486', ...
'0.612 0.614 1.000 0.545', ...
'0.614 0.620 1.000 0.494', ...
'0.620 0.633 1.000 0.554', ...
'0.633 0.637 1.000 0.604', ...
'0.637 0.638 1.000 0.660', ...
'0.638 0.651 1.000 0.711', ...
'0.651 0.653 1.000 0.661', ...
'0.653 0.659 1.000 0.712', ...
'0.659 0.666 1.000 0.650', ...
'0.666 0.679 1.000 0.600', ...
'0.679 0.687 1.000 0.532', ...
'0.687 0.692 1.000 0.469', ...
'0.692 0.697 1.000 0.520', ...
'0.697 0.714 1.000 0.586', ...
'0.714 0.715 1.000 0.524', ...
'0.715 0.728 1.000 0.577', ...
'0.728 0.731 1.000 0.522', ...
'0.731 0.733 1.000 0.576', ...
'0.733 0.738 1.000 0.526', ...
'0.738 0.742 1.000 0.583', ...
'0.742 0.748 1.000 0.638', ...
'0.748 0.758 1.000 0.585', ...
'0.758 0.766 1.000 0.644', ...
'0.766 0.767 1.000 0.584', ...
'0.767 0.789 1.000 0.644', ...
'0.789 0.793 1.000 0.579', ...
'0.793 0.796 1.000 0.635', ...
'0.796 0.798 1.000 0.583', ...
'0.798 0.801 1.000 0.523', ...
'0.801 0.803 1.000 0.575', ...
'0.803 0.806 1.000 0.511', ...
'0.806 0.814 1.000 0.461', ...
'0.814 0.820 1.000 0.407', ...
'0.820 0.825 1.000 0.460', ...
'0.825 0.838 1.000 0.513', ...
'0.838 0.851 1.000 0.445', ...
'0.851 0.854 1.000 0.510', ...
'0.854 0.859 1.000 0.453', ...
'0.859 0.864 1.000 0.399', ...
'0.864 0.870 1.000 0.346', ...
'0.870 0.875 1.000 0.292', ...
'0.875 0.878 1.000 0.349', ...
'0.878 0.880 1.000 0.409', ...
'0.880 0.883 1.000 0.346', ...
'0.883 0.886 1.000 0.290', ...
'0.886 0.890 1.000 0.224', ...
'0.890 0.895 1.000 0.287', ...
'0.895 0.902 1.000 0.339', ...
'0.902 0.903 1.000 0.390', ...
'0.903 0.909 1.000 0.441', ...
'0.909 0.914 1.000 0.497', ...
'0.914 0.917 1.000 0.548', ...
'0.917 0.920 1.000 0.497', ...
'0.920 0.922 1.000 0.547', ...
'0.922 0.925 1.000 0.478', ...
'0.925 0.927 1.000 0.424', ...
'0.927 0.937 1.000 0.369', ...
'0.937 0.944 1.000 0.420', ...
'0.944 0.948 1.000 0.474', ...
'0.948 0.951 1.000 0.526', ...
'0.951 0.955 1.000 0.581', ...
'0.955 0.967 1.000 0.530', ...
'0.967 0.980 1.000 0.585', ...
'0.980 0.993 1.000 0.530', ...
'0.993 0.996 1.000 0.473', ...
'0.996 0.999 1.000 0.528', ...
'0.999 1.004 1.000 0.472', ...
'1.004 1.024 1.000 0.417', ...
'1.024 1.025 1.000 0.468', ...
'1.025 1.027 1.000 0.408', ...
'1.027 1.029 1.000 0.463', ...
'1.029 1.039 1.000 0.515', ...
'1.039 1.048 1.000 0.574', ...
'1.048 1.068 1.000 0.519', ...
'1.068 1.072 1.000 0.464', ...
'1.072 1.075 1.000 0.408', ...
'1.075 1.078 1.000 0.466', ...
'1.078 1.086 1.000 0.516', ...
'1.086 1.100 1.000 0.462', ...
'1.100 1.110 1.000 0.409', ...
'1.110 1.122 1.000 0.462', ...
'1.122 1.123 1.000 0.412', ...
'1.123 1.124 1.000 0.362', ...
'1.124 1.126 1.000 0.415', ...
'1.126 1.144 1.000 0.471', ...
'1.144 1.149 1.000 0.417', ...
'1.149 1.150 1.000 0.476', ...
'1.150 1.159 1.000 0.423', ...
'1.159 1.163 1.000 0.476', ...
'1.163 1.165 1.000 0.536', ...
'1.165 1.172 1.000 0.588', ...
'1.172 1.173 1.000 0.651', ...
'1.173 1.179 1.000 0.600', ...
'1.179 1.185 1.000 0.540', ...
'1.185 1.186 1.000 0.479', ...
'1.186 1.193 1.000 0.538', ...
'1.193 1.201 1.000 0.590', ...
'1.201 1.205 1.000 0.535', ...
'1.205 1.212 1.000 0.482', ...
'1.212 1.217 1.000 0.428', ...
'1.217 1.221 1.000 0.486', ...
'1.221 1.228 1.000 0.434', ...
'1.228 1.237 1.000 0.381', ...
'1.237 1.238 1.000 0.327', ...
'1.238 1.243 1.000 0.386', ...
'1.243 1.244 1.000 0.440', ...
'1.244 1.250 1.000 0.386', ...
'1.250 1.254 1.000 0.333', ...
'1.254 1.262 1.000 0.388', ...
'1.262 1.267 1.000 0.450', ...
'1.267 1.290 1.000 0.387', ...
'1.290 1.303 1.000 0.443', ...
'1.303 1.306 1.000 0.392', ...
'1.306 1.314 1.000 0.326', ...
'1.314 1.320 1.000 0.379', ...
'1.320 1.321 1.000 0.327', ...
'1.321 1.335 1.000 0.387', ...
'1.335 1.344 1.000 0.449', ...
'1.344 1.351 1.000 0.513', ...
'1.351 1.357 1.000 0.463', ...
'1.357 1.366 1.000 0.523', ...
'1.366 1.369 1.000 0.472', ...
'1.369 1.371 1.000 0.525', ...
'1.371 1.384 1.000 0.468', ...
'1.384 1.392 1.000 0.520', ...
'1.392 1.398 1.000 0.588', ...
'1.398 1.406 1.000 0.532', ...
'1.406 1.429 1.000 0.584', ...
'1.429 1.434 1.000 0.533', ...
'1.434 1.440 1.000 0.584', ...
'1.440 1.443 1.000 0.533', ...
'1.443 1.467 1.000 0.475', ...
'1.467 1.485 1.000 0.541', ...
'1.485 1.487 1.000 0.490', ...
'1.487 1.494 1.000 0.432', ...
'1.494 1.507 1.000 0.378', ...
'1.507 1.509 1.000 0.435', ...
'1.509 1.516 1.000 0.485', ...
'1.516 1.518 1.000 0.539', ...
'1.518 1.520 1.000 0.591', ...
'1.520 1.523 1.000 0.541', ...
'1.523 1.530 1.000 0.593', ...
'1.530 1.532 1.000 0.650', ...
'1.532 1.534 1.000 0.598', ...
'1.534 1.536 1.000 0.544', ...
'1.536 1.540 1.000 0.492', ...
'1.540 1.543 1.000 0.547', ...
'1.543 1.548 1.000 0.491', ...
'1.548 1.557 1.000 0.435', ...
'1.557 1.560 1.000 0.492', ...
'1.560 1.569 1.000 0.543', ...
'1.569 1.573 1.000 0.488', ...
'1.573 1.587 1.000 0.540', ...
'1.587 1.596 1.000 0.489', ...
'1.596 1.601 1.000 0.546', ...
'1.601 1.612 1.000 0.598', ...
'1.612 1.620 1.000 0.541', ...
'1.620 1.629 1.000 0.607', ...
'1.629 1.636 1.000 0.554', ...
'1.636 1.658 1.000 0.504', ...
'1.658 1.662 1.000 0.564', ...
'1.662 1.665 1.000 0.621', ...
'1.665 1.672 1.000 0.570', ...
'1.672 1.680 1.000 0.625', ...
'1.680 1.693 1.000 0.574', ...
'1.693 1.698 1.000 0.519', ...
'1.698 1.702 1.000 0.467', ...
'1.702 1.710 1.000 0.406', ...
'1.710 1.716 1.000 0.349', ...
'1.716 1.720 1.000 0.405', ...
'1.720 1.729 1.000 0.350', ...
'1.729 1.745 1.000 0.412', ...
'1.745 1.750 1.000 0.357', ...
'1.750 1.753 1.000 0.408', ...
'1.753 1.757 1.000 0.461', ...
'1.757 1.761 1.000 0.410', ...
'1.761 1.770 1.000 0.349', ...
'1.770 1.789 1.000 0.298', ...
'1.789 1.791 1.000 0.244', ...
'1.791 1.798 1.000 0.306', ...
'1.798 1.802 1.000 0.369', ...
'1.802 1.805 1.000 0.424', ...
'1.805 1.806 1.000 0.475', ...
'1.806 1.810 1.000 0.419', ...
'1.810 1.816 1.000 0.478', ...
'1.816 1.819 1.000 0.539', ...
'1.819 1.820 1.000 0.591', ...
'1.820 1.825 1.000 0.539', ...
'1.825 1.828 1.000 0.476', ...
'1.828 1.832 1.000 0.418', ...
'1.832 1.835 1.000 0.353', ...
'1.835 1.838 1.000 0.298', ...
'1.838 1.848 1.000 0.349', ...
'1.848 1.855 1.000 0.404', ...
'1.855 1.858 1.000 0.354', ...
'1.858 1.872 1.000 0.302', ...
'1.872 1.875 1.000 0.354', ...
'1.875 1.879 1.000 0.300', ...
'1.879 1.887 1.000 0.240', ...
'1.887 1.895 1.000 0.186', ...
'1.895 1.901 1.000 0.239', ...
'1.901 1.907 1.000 0.295', ...
'1.907 1.910 1.000 0.350', ...
'1.910 1.914 1.000 0.414', ...
'1.914 1.916 1.000 0.469', ...
'1.916 1.918 1.000 0.526', ...
'1.918 1.922 1.000 0.462', ...
'1.922 1.935 1.000 0.516', ...
'1.935 1.939 1.000 0.452', ...
'1.939 1.945 1.000 0.505', ...
'1.945 1.954 1.000 0.450', ...
'1.954 1.966 1.000 0.518', ...
'1.966 1.969 1.000 0.463', ...
'1.969 1.981 1.000 0.396', ...
'1.981 1.984 1.000 0.455', ...
'1.984 1.985 1.000 0.403', ...
'1.985 1.987 1.000 0.454', ...
'1.987 1.999 1.000 0.512', ...
'1.999 2.004 1.000 0.572', ...
'2.004 2.008 1.000 0.623', ...
'2.008 2.014 1.000 0.572', ...
'2.014 2.018 1.000 0.514', ...
'2.018 2.024 1.000 0.458', ...
'2.024 2.033 1.000 0.521', ...
'2.033 2.038 1.000 0.467', ...
'2.038 2.048 1.000 0.522', ...
'2.048 2.049 1.000 0.572', ...
'2.049 2.059 1.000 0.517', ...
'2.059 2.062 1.000 0.462', ...
'2.062 2.065 1.000 0.516', ...
'2.065 2.080 1.000 0.462', ...
'2.080 2.084 1.000 0.516', ...
'2.084 2.087 1.000 0.573', ...
'2.087 2.097 1.000 0.518', ...
'2.097 2.099 1.000 0.452', ...
'2.099 2.109 1.000 0.506', ...
'2.109 2.121 1.000 0.452', ...
'2.121 2.124 1.000 0.503', ...
'2.124 2.135 1.000 0.566', ...
'2.135 2.145 1.000 0.513', ...
'2.145 2.152 1.000 0.575', ...
'2.152 2.154 1.000 0.523', ...
'2.154 2.160 1.000 0.591', ...
'2.160 2.162 1.000 0.534', ...
'2.162 2.167 1.000 0.484', ...
'2.167 2.175 1.000 0.544', ...
'2.175 2.179 1.000 0.490', ...
'2.179 2.191 1.000 0.425', ...
'2.191 2.195 1.000 0.374', ...
'2.195 2.204 1.000 0.427', ...
'2.204 2.213 1.000 0.486', ...
'2.213 2.217 1.000 0.537', ...
'2.217 2.227 1.000 0.591', ...
'2.227 2.230 1.000 0.534', ...
'2.230 2.241 1.000 0.481', ...
'2.241 2.247 1.000 0.416', ...
'2.247 2.257 1.000 0.360', ...
'2.257 2.260 1.000 0.413', ...
'2.260 2.264 1.000 0.349', ...
'2.264 2.268 1.000 0.295', ...
'2.268 2.270 1.000 0.238', ...
'2.270 2.280 1.000 0.300', ...
'2.280 2.316 1.000 0.366', ...
'2.316 2.326 1.000 0.417', ...
'2.326 2.331 1.000 0.356', ...
'2.331 2.341 1.000 0.417', ...
'2.341 2.356 1.000 0.472', ...
'2.356 2.361 1.000 0.419', ...
'2.361 2.365 1.000 0.356', ...
'2.365 2.368 1.000 0.411', ...
'2.368 2.372 1.000 0.350', ...
'2.372 2.375 1.000 0.404', ...
'2.375 2.388 1.000 0.463', ...
'2.388 2.395 1.000 0.403', ...
'2.395 2.406 1.000 0.345', ...
'2.406 2.411 1.000 0.399', ...
'2.411 2.433 1.000 0.451', ...
'2.433 2.460 1.000 0.400', ...
'2.460 2.468 1.000 0.450', ...
'2.468 2.478 1.000 0.508', ...
'2.478 2.485 1.000 0.456', ...
'2.485 2.500 1.000 0.513', ...
'2.500 2.509 1.000 0.450', ...
'2.509 2.522 1.000 0.393', ...
'2.522 2.526 1.000 0.445', ...
'2.526 2.530 1.000 0.503', ...
'2.530 2.539 1.000 0.444', ...
'2.539 2.540 1.000 0.393', ...
'2.540 2.558 1.000 0.447', ...
'2.558 2.561 1.000 0.510', ...
'2.561 2.563 1.000 0.457', ...
'2.563 2.570 1.000 0.402', ...
'2.570 2.591 1.000 0.465', ...
'2.591 2.593 1.000 0.516', ...
'2.593 2.613 1.000 0.451', ...
'2.613 2.647 1.000 0.508', ...
'2.647 2.652 1.000 0.456', ...
'2.652 2.654 1.000 0.506', ...
'2.654 2.659 1.000 0.567', ...
'2.659 2.662 1.000 0.619', ...
'2.662 2.673 1.000 0.673', ...
'2.673 2.676 1.000 0.739', ...
'2.676 2.683 1.000 0.794', ...
'2.683 2.704 1.000 0.730', ...
'2.704 2.714 1.000 0.678', ...
'2.714 2.719 1.000 0.624', ...
'2.719 2.730 1.000 0.566', ...
'2.730 2.739 1.000 0.512', ...
'2.739 2.743 1.000 0.576', ...
'2.743 2.748 1.000 0.522', ...
'2.748 2.757 1.000 0.467', ...
'2.757 2.759 1.000 0.517', ...
'2.759 2.768 1.000 0.573', ...
'2.768 2.775 1.000 0.625', ...
'2.775 2.792 1.000 0.567', ...
'2.792 2.797 1.000 0.617', ...
'2.797 2.824 1.000 0.668', ...
'2.824 2.827 1.000 0.608', ...
'2.827 2.829 1.000 0.555', ...
'2.829 2.831 1.000 0.501', ...
'2.831 2.832 1.000 0.555', ...
'2.832 2.864 1.000 0.492', ...
'2.864 2.871 1.000 0.442', ...
'2.871 2.881 1.000 0.495', ...
'2.881 2.886 1.000 0.439', ...
'2.886 2.890 1.000 0.496', ...
'2.890 2.895 1.000 0.445', ...
'2.895 2.898 1.000 0.391', ...
'2.898 2.924 1.000 0.449', ...
'2.924 2.941 1.000 0.499', ...
'2.941 2.946 1.000 0.449', ...
'2.946 2.949 1.000 0.398', ...
'2.949 2.979 1.000 0.452', ...
'2.979 2.985 1.000 0.513', ...
'2.985 2.993 1.000 0.457', ...
'2.993 2.996 1.000 0.407', ...
'2.996 3.000 1.000 0.465', ...
'3.000 3.014 1.000 0.516', ...
'3.014 3.017 1.000 0.572', ...
'3.017 3.027 1.000 0.626', ...
'3.027 3.031 1.000 0.686', ...
'3.031 3.040 1.000 0.634', ...
'3.040 3.059 1.000 0.687', ...
'3.059 3.067 1.000 0.737', ...
'3.067 3.083 1.000 0.795', ...
'3.083 3.091 1.000 0.742', ...
'3.091 3.094 1.000 0.690', ...
'3.094 3.102 1.000 0.635', ...
'3.102 3.108 1.000 0.581', ...
'3.108 3.115 1.000 0.530', ...
'3.115 3.118 1.000 0.480', ...
'3.118 3.127 1.000 0.426', ...
'3.127 3.134 1.000 0.479', ...
'3.134 3.141 1.000 0.532', ...
'3.141 3.153 1.000 0.482', ...
'3.153 3.159 1.000 0.535', ...
'3.159 3.167 1.000 0.479', ...
'3.167 3.170 1.000 0.531', ...
'3.170 3.172 1.000 0.592', ...
'3.172 3.178 1.000 0.538', ...
'3.178 3.200 1.000 0.481', ...
'3.200 3.210 1.000 0.536', ...
'3.210 3.216 1.000 0.475', ...
'3.216 3.223 1.000 0.525', ...
'3.223 3.227 1.000 0.471', ...
'3.227 3.229 1.000 0.417', ...
'3.229 3.234 1.000 0.362', ...
'3.234 3.237 1.000 0.308', ...
'3.237 3.243 1.000 0.359', ...
'3.243 3.252 1.000 0.410', ...
'3.252 3.257 1.000 0.463', ...
'3.257 3.276 1.000 0.514', ...
'3.276 3.279 1.000 0.462', ...
'3.279 3.281 1.000 0.521', ...
'3.281 3.287 1.000 0.575', ...
'3.287 3.299 1.000 0.628', ...
'3.299 3.301 1.000 0.575', ...
'3.301 3.306 1.000 0.518', ...
'3.306 3.312 1.000 0.575', ...
'3.312 3.315 1.000 0.641', ...
'3.315 3.322 1.000 0.579', ...
'3.322 3.326 1.000 0.519', ...
'3.326 3.333 1.000 0.467', ...
'3.333 3.334 1.000 0.411', ...
'3.334 3.356 1.000 0.353', ...
'3.356 3.360 1.000 0.294', ...
'3.360 3.367 1.000 0.348', ...
'3.367 3.371 1.000 0.405', ...
'3.371 3.373 1.000 0.352', ...
'3.373 3.374 1.000 0.298', ...
'3.374 3.387 1.000 0.350', ...
'3.387 3.392 1.000 0.299', ...
'3.392 3.398 1.000 0.350', ...
'3.398 3.419 1.000 0.405', ...
'3.419 3.423 1.000 0.353', ...
'3.423 3.438 1.000 0.301', ...
'3.438 3.453 1.000 0.356', ...
'3.453 3.456 1.000 0.412', ...
'3.456 3.459 1.000 0.350', ...
'3.459 3.469 1.000 0.413', ...
'3.469 3.478 1.000 0.351', ...
'3.478 3.479 1.000 0.295', ...
'3.479 3.487 1.000 0.348', ...
'3.487 3.491 1.000 0.289', ...
'3.491 3.495 1.000 0.343', ...
'3.495 3.499 1.000 0.280', ...
'3.499 3.502 1.000 0.332', ...
'3.502 3.505 1.000 0.275', ...
'3.505 3.509 1.000 0.333', ...
'3.509 3.519 1.000 0.281', ...
'3.519 3.523 1.000 0.218', ...
'3.523 3.539 1.000 0.273', ...
'3.539 3.545 1.000 0.218', ...
'3.545 3.547 1.000 0.163', ...
'3.547 3.554 1.000 0.218', ...
'3.554 3.555 1.000 0.276', ...
'3.555 3.567 1.000 0.329', ...
'3.567 3.569 1.000 0.386', ...
'3.569 3.574 1.000 0.440', ...
'3.574 3.583 1.000 0.493', ...
'3.583 3.587 1.000 0.441', ...
'3.587 3.611 1.000 0.493', ...
'3.611 3.612 1.000 0.545', ...
'3.612 3.613 1.000 0.596', ...
'3.613 3.621 1.000 0.539', ...
'3.621 3.626 1.000 0.487', ...
'3.626 3.627 1.000 0.539', ...
'3.627 3.634 1.000 0.486', ...
'3.634 3.642 1.000 0.537', ...
'3.642 3.644 1.000 0.593', ...
'3.644 3.650 1.000 0.650', ...
'3.650 3.654 1.000 0.701', ...
'3.654 3.659 1.000 0.647', ...
'3.659 3.663 1.000 0.590', ...
'3.663 3.668 1.000 0.647', ...
'3.668 3.675 1.000 0.590', ...
'3.675 3.679 1.000 0.528', ...
'3.679 3.683 1.000 0.580', ...
'3.683 3.685 1.000 0.516', ...
'3.685 3.691 1.000 0.579', ...
'3.691 3.695 1.000 0.523', ...
'3.695 3.705 1.000 0.588', ...
'3.705 3.710 1.000 0.642', ...
'3.710 3.711 1.000 0.587', ...
'3.711 3.717 1.000 0.531', ...
'3.717 3.740 1.000 0.478', ...
'3.740 3.744 1.000 0.425', ...
'3.744 3.750 1.000 0.486', ...
'3.750 3.753 1.000 0.539', ...
'3.753 3.772 1.000 0.592', ...
'3.772 3.779 1.000 0.649', ...
'3.779 3.796 1.000 0.700', ...
'3.796 3.814 1.000 0.757', ...
'3.814 3.819 1.000 0.698', ...
'3.819 3.832 1.000 0.633', ...
'3.832 3.833 1.000 0.686', ...
'3.833 3.840 1.000 0.630', ...
'3.840 3.842 1.000 0.690', ...
'3.842 3.845 1.000 0.742', ...
'3.845 3.851 1.000 0.795', ...
'3.851 3.853 1.000 0.739', ...
'3.853 3.856 1.000 0.795', ...
'3.856 3.870 1.000 0.738', ...
'3.870 3.875 1.000 0.679', ...
'3.875 3.877 1.000 0.628', ...
'3.877 3.882 1.000 0.570', ...
'3.882 3.887 1.000 0.519', ...
'3.887 3.894 1.000 0.580', ...
'3.894 3.901 1.000 0.514', ...
'3.901 3.902 1.000 0.567', ...
'3.902 3.906 1.000 0.509', ...
'3.906 3.915 1.000 0.452', ...
'3.915 3.917 1.000 0.396', ...
'3.917 3.920 1.000 0.333', ...
'3.920 3.926 1.000 0.274', ...
'3.926 3.934 1.000 0.216', ...
'3.934 3.944 1.000 0.159', ...
'3.944 3.950 1.000 0.211', ...
'3.950 3.959 1.000 0.157', ...
'3.959 3.966 1.000 0.102', ...
'3.966 3.982 1.000 0.051', ...
'3.982 4.000 1.000 0.001', ...
'4.000 999 1.000 0.000'};
set(handles.edit1, 'String', modelBS);
end
guidata(hObject, handles);
i_drawmodel(handles);
% --- Executes during object creation, after setting all properties.
function popupmenu1_CreateFcn(hObject, eventdata, handles)
% hObject handle to popupmenu1 (see GCBO)
% eventdata reserved - to be defined in a future version of MATLAB
% handles empty - handles not created until after all CreateFcns called
% Hint: popupmenu controls usually have a white background on Windows.
% See ISPC and COMPUTER.
if ispc && isequal(get(hObject, 'BackgroundColor'), get(0, 'defaultUicontrolBackgroundColor'))
set(hObject, 'BackgroundColor', 'white');
end
set(hObject, 'String', {'Default', 'Selective Sweep', 'Balancing Selection'});
function edit1_Callback(hObject, eventdata, handles)
% hObject handle to edit1 (see GCBO)
% eventdata reserved - to be defined in a future version of MATLAB
% handles structure with handles and user data (see GUIDATA)
% Hints: get(hObject,'String') returns contents of edit1 as text
% str2double(get(hObject,'String')) returns contents of edit1 as a double
% --- Executes during object creation, after setting all properties.
function edit1_CreateFcn(hObject, eventdata, handles)
% hObject handle to edit1 (see GCBO)
% eventdata reserved - to be defined in a future version of MATLAB
% handles empty - handles not created until after all CreateFcns called
% Hint: edit controls usually have a white background on Windows.
% See ISPC and COMPUTER.
if ispc && isequal(get(hObject, 'BackgroundColor'), get(0, 'defaultUicontrolBackgroundColor'))
set(hObject, 'BackgroundColor', 'white');
end
% --- Executes on button press in pushbuttonClose.
function pushbuttonClose_Callback(hObject, eventdata, handles)
% hObject handle to pushbuttonClose (see GCBO)
% eventdata reserved - to be defined in a future version of MATLAB
% handles structure with handles and user data (see GUIDATA)
selection = questdlg(['Close ', get(handles.figure1, 'Name'), '?'], ...
['Close ', get(handles.figure1, 'Name'), '...'], ...
'Yes', 'No', 'Yes');
if strcmp(selection, 'No')
return;
end
delete(handles.figure1)
function i_drawmodel(handles)
s = get(handles.edit1, 'String');
d = [];
for k = 1:length(s)
d = [d; strread(s{k})];
end
t0 = d(:, 1);
t1 = d(:, 2);
N = d(:, 3);
p = d(:, 4);
if t1(end) ~= 999.0
error('Last number of t1 should be 999.00');
end
t1(t1 == 999) = max(t1(1:end-1)) * 1.2;
t1 = [t0(1); t1];
N = [N(1); N];
p = [p(1); p];
%clf;
stairs(t1, N, 'k', 'LineWidth', 4)
hold on
stairs(t1, N.*p, 'r');
%xlim([t1(1),t1(end)])
ylim([0, 1.01])
box off
%grid off
hold off
xlabel('Present <--- Time (4N_0 generations) --- Past');
%rotate(gca,[1 0 0],180)
ylabel('Population Size')
% --- Executes on button press in pushbuttonSimulate.
function pushbuttonSimulate_Callback(hObject, eventdata, handles)
% hObject handle to pushbuttonSimulate (see GCBO)
% eventdata reserved - to be defined in a future version of MATLAB
% handles structure with handles and user data (see GUIDATA)
set(handles.pushbuttonSimulate, 'Enable', 'off');
pw0 = pwd;
pw1 = fileparts(which(mfilename));
cd(pw1);
cd('addins/mbs/');
s = get(handles.edit1, 'String');
fid = fopen('traj_0.dat', 'w');
fprintf(fid, '%s\n', s{:});
fclose(fid);
xa = str2double(get(handles.edit_nsam, 'String'));
xb = str2double(get(handles.edit_4Nu, 'String'));
xc = str2double(get(handles.edit_4Nr, 'String'));
xd = str2double(get(handles.edit_nsites, 'String'));
xe = str2double(get(handles.edit_selpos, 'String'));
cmdstr = sprintf('mbs %d -t %f -r %f -s %d %d -f 1 1 traj >outfile.txt', ...
xa, xb, xc, xd, xe);
fprintf('%s\n', cmdstr);
try
h = waitbar(0, 'Please wait...');
steps = 1000;
for step = 1:300
% computations take place here
waitbar(step / steps)
end
status = system(cmdstr);
for step = 301:steps
waitbar(step / steps)
end
if status == 0
%[Data]=readmsoutput('output.txt');
[haplodata, hmarkinfo] = snp_readmsoutfile('outfile.txt');
figure;
subplot(3, 1, 1)
snp_plotmarkpos(hmarkinfo);
subplot(3, 1, 3)
histsfs(hmarkinfo.daf, 2);
subplot(3, 1, 2)
smplni = size(haplodata, 1);
fx = smplni / (smplni - 1);
dafpi = hmarkinfo.daf;
thetapi = 2 .* dafpi .* (1 - dafpi) * fx;
thetah = 2 .* dafpi .* dafpi * fx;
fwh2 = [thetapi - thetah];
pos2 = hmarkinfo.pos;
winsize = 15;
m = length(pos2) - winsize;
sp = 1:m;
ep = sp + (winsize - 1);
ep(ep > m) = m;
nwin = length(sp);
v = zeros(1, nwin);
pos = zeros(1, nwin);
for (k = 1:nwin),
idx = sp(k):ep(k);
pos(k) = nanmean(pos2(idx));
v(k) = nanmean(fwh2(idx));
end
plot(pos, v, '-')
ylabel('Fay&Wu H')
end
close(h);
catch ME
disp(ME)
close(h);
cd(pw0);
errordlg('MBS running time error.');
end
cd(pw0);
pause(5);
set(handles.pushbuttonSimulate, 'Enable', 'on');
function edit_nsam_Callback(hObject, eventdata, handles)
% hObject handle to edit_nsam (see GCBO)
% eventdata reserved - to be defined in a future version of MATLAB
% handles structure with handles and user data (see GUIDATA)
% Hints: get(hObject,'String') returns contents of edit_nsam as text
% str2double(get(hObject,'String')) returns contents of edit_nsam as a double
% --- Executes during object creation, after setting all properties.
function edit_nsam_CreateFcn(hObject, eventdata, handles)
% hObject handle to edit_nsam (see GCBO)
% eventdata reserved - to be defined in a future version of MATLAB
% handles empty - handles not created until after all CreateFcns called
% Hint: edit controls usually have a white background on Windows.
% See ISPC and COMPUTER.
if ispc && isequal(get(hObject, 'BackgroundColor'), get(0, 'defaultUicontrolBackgroundColor'))
set(hObject, 'BackgroundColor', 'white');
end
function edit_4Nu_Callback(hObject, eventdata, handles)
% hObject handle to edit_4Nu (see GCBO)
% eventdata reserved - to be defined in a future version of MATLAB
% handles structure with handles and user data (see GUIDATA)
% Hints: get(hObject,'String') returns contents of edit_4Nu as text
% str2double(get(hObject,'String')) returns contents of edit_4Nu as a double
% --- Executes during object creation, after setting all properties.
function edit_4Nu_CreateFcn(hObject, eventdata, handles)
% hObject handle to edit_4Nu (see GCBO)
% eventdata reserved - to be defined in a future version of MATLAB
% handles empty - handles not created until after all CreateFcns called
% Hint: edit controls usually have a white background on Windows.
% See ISPC and COMPUTER.
if ispc && isequal(get(hObject, 'BackgroundColor'), get(0, 'defaultUicontrolBackgroundColor'))
set(hObject, 'BackgroundColor', 'white');
end
function edit_4Nr_Callback(hObject, eventdata, handles)
% hObject handle to edit_4Nr (see GCBO)
% eventdata reserved - to be defined in a future version of MATLAB
% handles structure with handles and user data (see GUIDATA)
% Hints: get(hObject,'String') returns contents of edit_4Nr as text
% str2double(get(hObject,'String')) returns contents of edit_4Nr as a double
% --- Executes during object creation, after setting all properties.
function edit_4Nr_CreateFcn(hObject, eventdata, handles)
% hObject handle to edit_4Nr (see GCBO)
% eventdata reserved - to be defined in a future version of MATLAB
% handles empty - handles not created until after all CreateFcns called
% Hint: edit controls usually have a white background on Windows.
% See ISPC and COMPUTER.
if ispc && isequal(get(hObject, 'BackgroundColor'), get(0, 'defaultUicontrolBackgroundColor'))
set(hObject, 'BackgroundColor', 'white');
end
function edit_nsites_Callback(hObject, eventdata, handles)
% hObject handle to edit_nsites (see GCBO)
% eventdata reserved - to be defined in a future version of MATLAB
% handles structure with handles and user data (see GUIDATA)
% Hints: get(hObject,'String') returns contents of edit_nsites as text
% str2double(get(hObject,'String')) returns contents of edit_nsites as a double