ACKNOWLEDGEMENT

GTFAnnotation class


Thanks:

Steven Huang - mStirling.c
John Burkardt - stirling1.m
A. Trujillo-Ortiz, R. Hernandez-Walls and A. Castro-Perez - fisherextest.m
Mukhtar Ullah - freqtable.m
Peter Wasmeier - choosebox.m
L.Cavin - CSEFlagDialog.m


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Dear all,

I would like to announce the release of PGEToolbox version 1.0.

PGEToolbox is a Matlab-based software package for analysis of polymorphism and 
divergence data for population genetics and evolution. It estimates several 
basic statistics of DNA sequence variation and carries out statistical tests 
of selective neutrality under the infinite alleles model, such as Tajima's D 
test, Fu & Li's tests and Fay & Wu's H test. The significance of tests is 
determined from the distribution of the statistics obtained by coalescent 
simulation. The toolbox performs McDonald-Kreitman test (and several extensions). 
PGEToolbox also contains functions for handling SNP (Single Nucleotide 
Polymorphism) genotype data. PGEToolbox is open-sourced, can be easily 
extended or tailored for specific tasks, and scaled up for large data sets.
For academic uses, PGEToolbox is available free of charge at
http://bioinformatics.org/pgetoolbox


Best regards,

James J. Cai  
jamescai@stanford.edu
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