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Support custome genome and more functions? #3

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SichongP opened this issue Feb 5, 2020 · 0 comments
Open

Support custome genome and more functions? #3

SichongP opened this issue Feb 5, 2020 · 0 comments

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@SichongP
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SichongP commented Feb 5, 2020

Hi,

I recently migrated from R to Python for data analysis and I've been looking for something equivalent to karyoploteR in R and came across this repo. I'm wondering if you have any plans to further develop this package to expand its functionality?
A few things that I can think of being useful:

  • Custom genome support
  • Scatter plot for "GWAS-like" data
  • Density plot for expression, variant, coverage data
  • Gene tracks for genes, mRNA, and other epigenetic markers
  • multiple panels to draw on to combine different plots into one

If this seems interesting to you, I'd be happy to contribute. As far as I know, there isn't a python package like this out there and while all of these are doable with matplotlib, a high-level package will significantly simplify the process.

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