diff --git a/.github/CODE_OF_CONDUCT.md b/.github/CODE_OF_CONDUCT.md index d4e2b9f..ad629fc 100644 --- a/.github/CODE_OF_CONDUCT.md +++ b/.github/CODE_OF_CONDUCT.md @@ -1,93 +1,93 @@ -# Code of Conduct - -This code of conduct applies to the maintainers and contributors alike. - -## Dealing with issues and support requests - -_We wish to add a specific section on dealing with issues opened against the -repository here._ - -This repository exists in the context of the interTwin project. While that scope -does not restrict the usage, it does inform the priority we assign to issues and -the order we deal with them. - -We welcome issues reported by the public, and more specifically the community of -people using this repository. - -While we undertake to do everything in our power to respond to issues in a -timely manner, and to prioritise issues based on reasonable requests from -submitters, the maintainers expect that the prioritisation of issues as decided -by them is respected. - -## Our Pledge - -In the interest of fostering an open and welcoming environment, we as -contributors and maintainers pledge to making participation in our project and -our community a harassment-free experience for everyone, regardless of age, body -size, disability, ethnicity, gender identity and expression, level of -experience, nationality, personal appearance, race, religion, or sexual identity -and orientation. - -## Our Standards - -Examples of behaviour that contributes to creating a positive environment -include: - -- Using welcoming and inclusive language -- Being respectful of differing viewpoints and experiences -- Gracefully accepting constructive criticism -- Focusing on what is best for the community -- Showing empathy towards other community members - -Examples of unacceptable behaviour by participants include: - -- The use of sexualized language or imagery and unwelcome sexual attention or - advances -- Trolling, insulting/derogatory comments, and personal or political attacks -- Public or private harassment -- Publishing others' private information, such as a physical or electronic - address, without explicit permission -- Other conduct which could reasonably be considered inappropriate in a - professional setting - -## Our Responsibilities - -Project maintainers are responsible for clarifying the standards of acceptable -behaviour and are expected to take appropriate and fair corrective action in -response to any instances of unacceptable behaviour. - -Project maintainers have the right and responsibility to remove, edit, or reject -comments, commits, code, wiki edits, issues, and other contributions that are -not aligned to this Code of Conduct, or to ban temporarily or permanently any -contributor for other behaviours that they deem inappropriate, threatening, -offensive, or harmful. - -## Scope - -This Code of Conduct applies both within project spaces and in public spaces -when an individual is representing the project or its community. Examples of -representing a project or community include using an official project e-mail -address, posting via an official social media account, or acting as an appointed -representative at an online or offline event. Representation of a project may be -further defined and clarified by project maintainers. - -## Enforcement - -Instances of abusive, harassing, or otherwise unacceptable behaviour may be -reported by contacting the interTwin project team at info@interTwin.eu. The team will -review and investigate all complaints, and will respond in a way that it deems -appropriate to the circumstances. The team is obligated to maintain -confidentiality with regard to the reporter of an incident. Further details of -specific enforcement policies may be posted separately. - -Project maintainers who do not follow or enforce the Code of Conduct in good -faith may face temporary or permanent repercussions as determined by other -members of the project's leadership. - -## Attribution - -This Code of Conduct is adapted from the [Contributor Covenant][homepage], -version 1.4, available at [http://contributor-covenant.org/version/1/4][version] - -[homepage]: http://contributor-covenant.org -[version]: http://contributor-covenant.org/version/1/4/ +# Code of Conduct + +This code of conduct applies to the maintainers and contributors alike. + +## Dealing with issues and support requests + +_We wish to add a specific section on dealing with issues opened against the +repository here._ + +This repository exists in the context of the interTwin project. While that scope +does not restrict the usage, it does inform the priority we assign to issues and +the order we deal with them. + +We welcome issues reported by the public, and more specifically the community of +people using this repository. + +While we undertake to do everything in our power to respond to issues in a +timely manner, and to prioritise issues based on reasonable requests from +submitters, the maintainers expect that the prioritisation of issues as decided +by them is respected. + +## Our Pledge + +In the interest of fostering an open and welcoming environment, we as +contributors and maintainers pledge to making participation in our project and +our community a harassment-free experience for everyone, regardless of age, body +size, disability, ethnicity, gender identity and expression, level of +experience, nationality, personal appearance, race, religion, or sexual identity +and orientation. + +## Our Standards + +Examples of behaviour that contributes to creating a positive environment +include: + +- Using welcoming and inclusive language +- Being respectful of differing viewpoints and experiences +- Gracefully accepting constructive criticism +- Focusing on what is best for the community +- Showing empathy towards other community members + +Examples of unacceptable behaviour by participants include: + +- The use of sexualized language or imagery and unwelcome sexual attention or + advances +- Trolling, insulting/derogatory comments, and personal or political attacks +- Public or private harassment +- Publishing others' private information, such as a physical or electronic + address, without explicit permission +- Other conduct which could reasonably be considered inappropriate in a + professional setting + +## Our Responsibilities + +Project maintainers are responsible for clarifying the standards of acceptable +behaviour and are expected to take appropriate and fair corrective action in +response to any instances of unacceptable behaviour. + +Project maintainers have the right and responsibility to remove, edit, or reject +comments, commits, code, wiki edits, issues, and other contributions that are +not aligned to this Code of Conduct, or to ban temporarily or permanently any +contributor for other behaviours that they deem inappropriate, threatening, +offensive, or harmful. + +## Scope + +This Code of Conduct applies both within project spaces and in public spaces +when an individual is representing the project or its community. Examples of +representing a project or community include using an official project e-mail +address, posting via an official social media account, or acting as an appointed +representative at an online or offline event. Representation of a project may be +further defined and clarified by project maintainers. + +## Enforcement + +Instances of abusive, harassing, or otherwise unacceptable behaviour may be +reported by contacting the interTwin project team at info@interTwin.eu. The team will +review and investigate all complaints, and will respond in a way that it deems +appropriate to the circumstances. The team is obligated to maintain +confidentiality with regard to the reporter of an incident. Further details of +specific enforcement policies may be posted separately. + +Project maintainers who do not follow or enforce the Code of Conduct in good +faith may face temporary or permanent repercussions as determined by other +members of the project's leadership. + +## Attribution + +This Code of Conduct is adapted from the [Contributor Covenant][homepage], +version 1.4, available at [http://contributor-covenant.org/version/1/4][version] + +[homepage]: http://contributor-covenant.org +[version]: http://contributor-covenant.org/version/1/4/ diff --git a/.github/ISSUE_TEMPLATE.md b/.github/ISSUE_TEMPLATE.md index 4c6a769..0940a58 100644 --- a/.github/ISSUE_TEMPLATE.md +++ b/.github/ISSUE_TEMPLATE.md @@ -1,52 +1,52 @@ - - -# Short Description of the issue - - - -## Environment - - - -- Operating System: -- Other related components versions: - -## Steps to reproduce - - - -## Logs, stacktrace, or other symptoms - - - -```shell -output -``` - - - -# Summary of proposed changes + + +# Short Description of the issue + + + +## Environment + + + +- Operating System: +- Other related components versions: + +## Steps to reproduce + + + +## Logs, stacktrace, or other symptoms + + + +```shell +output +``` + + + +# Summary of proposed changes diff --git a/.github/PULL_REQUEST_TEMPLATE.md b/.github/PULL_REQUEST_TEMPLATE.md index 3259778..2e2b599 100644 --- a/.github/PULL_REQUEST_TEMPLATE.md +++ b/.github/PULL_REQUEST_TEMPLATE.md @@ -1,17 +1,17 @@ - - -# Summary - - - ---- - - - -**Related issue :** + + +# Summary + + + +--- + + + +**Related issue :** diff --git a/.github/dependabot.yml b/.github/dependabot.yml index 8e85703..73d79b7 100644 --- a/.github/dependabot.yml +++ b/.github/dependabot.yml @@ -1,8 +1,8 @@ ---- -version: 2 -updates: - # Maintain dependencies for GitHub Actions - - package-ecosystem: "github-actions" - directory: "/" - schedule: - interval: "daily" +--- +version: 2 +updates: + # Maintain dependencies for GitHub Actions + - package-ecosystem: "github-actions" + directory: "/" + schedule: + interval: "daily" diff --git a/.github/linters/.flake8 b/.github/linters/.flake8 index 230f50a..ce7d8cf 100644 --- a/.github/linters/.flake8 +++ b/.github/linters/.flake8 @@ -1,4 +1,4 @@ -[flake8] -# https://black.readthedocs.io/en/stable/guides/using_black_with_other_tools.html#flake8 -extend-ignore = E203,W503 -max-line-length = 88 +[flake8] +# https://black.readthedocs.io/en/stable/guides/using_black_with_other_tools.html#flake8 +extend-ignore = E203,W503 +max-line-length = 88 diff --git a/.github/linters/.markdownlint.json b/.github/linters/.markdownlint.json index de7f46b..4f9b910 100644 --- a/.github/linters/.markdownlint.json +++ b/.github/linters/.markdownlint.json @@ -1,12 +1,12 @@ -{ - "MD013": { - "line_length": 120, - "code_blocks": false, - "tables": false - }, - "MD014": false, - "MD024": false, - "MD026": { - "punctuation": ".,:;!" - } -} +{ + "MD013": { + "line_length": 120, + "code_blocks": false, + "tables": false + }, + "MD014": false, + "MD024": false, + "MD026": { + "punctuation": ".,:;!" + } +} diff --git a/.github/linters/mlc_config.json b/.github/linters/mlc_config.json index d90259a..3363b39 100644 --- a/.github/linters/mlc_config.json +++ b/.github/linters/mlc_config.json @@ -1,24 +1,24 @@ -{ - "httpHeaders": [ - { - "urls": ["https://docs.github.com/"], - "headers": { - "Accept-Encoding": "zstd, br, gzip, deflate" - } - } - ], - "ignorePatterns": [ - { - "pattern": "^http://localhost" - }, - { - "pattern": "^https://example.com" - }, - { - "pattern": "https://github.com/interTwin-eu/REPOSITORY/issues/new" - }, - { - "pattern": "https://github.com/interTwin-eu/REPOSITORY/graphs/contributors" - } - ] -} +{ + "httpHeaders": [ + { + "urls": ["https://docs.github.com/"], + "headers": { + "Accept-Encoding": "zstd, br, gzip, deflate" + } + } + ], + "ignorePatterns": [ + { + "pattern": "^http://localhost" + }, + { + "pattern": "^https://example.com" + }, + { + "pattern": "https://github.com/interTwin-eu/REPOSITORY/issues/new" + }, + { + "pattern": "https://github.com/interTwin-eu/REPOSITORY/graphs/contributors" + } + ] +} diff --git a/.github/workflows/check-links.yml b/.github/workflows/check-links.yml index 80a2db9..7fe6d33 100644 --- a/.github/workflows/check-links.yml +++ b/.github/workflows/check-links.yml @@ -1,30 +1,30 @@ ---- -name: Check links - -on: - push: - pull_request: - -jobs: - markdown-link-check: - name: Check links using markdown-link-check - runs-on: ubuntu-latest - - steps: - # Checks out a copy of your repository on the ubuntu-latest machine - - name: Checkout code - uses: actions/checkout@v3 - with: - # Make sure the actual branch is checked out when running on PR - # ref: ${{ github.event.pull_request.head.sha }} - # Full git history needed to get proper list of changed files - fetch-depth: 0 - - - name: Check links on new changes - uses: gaurav-nelson/github-action-markdown-link-check@v1 - with: - config-file: ".github/linters/mlc_config.json" - check-modified-files-only: "yes" - use-quiet-mode: "yes" - use-verbose-mode: "yes" - base-branch: "main" +--- +name: Check links + +on: + push: + pull_request: + +jobs: + markdown-link-check: + name: Check links using markdown-link-check + runs-on: ubuntu-latest + + steps: + # Checks out a copy of your repository on the ubuntu-latest machine + - name: Checkout code + uses: actions/checkout@v3 + with: + # Make sure the actual branch is checked out when running on PR + # ref: ${{ github.event.pull_request.head.sha }} + # Full git history needed to get proper list of changed files + fetch-depth: 0 + + - name: Check links on new changes + uses: gaurav-nelson/github-action-markdown-link-check@v1 + with: + config-file: ".github/linters/mlc_config.json" + check-modified-files-only: "yes" + use-quiet-mode: "yes" + use-verbose-mode: "yes" + base-branch: "main" diff --git a/.github/workflows/lint.yml b/.github/workflows/lint.yml index 8196a73..71ecb89 100644 --- a/.github/workflows/lint.yml +++ b/.github/workflows/lint.yml @@ -1,33 +1,33 @@ ---- -name: Lint - -on: - push: - pull_request: - -jobs: - super-lint: - name: Lint with Super-Linter - runs-on: ubuntu-latest - - steps: - # Checks out a copy of your repository on the ubuntu-latest machine - - name: Checkout code - uses: actions/checkout@v3 - with: - # Make sure the actual branch is checked out when running on PR - # ref: ${{ github.event.pull_request.head.sha }} - # Full git history needed to get proper list of changed files - fetch-depth: 0 - - # Runs the Super-Linter action - - name: Run Super-Linter on new changes - uses: docker://ghcr.io/github/super-linter:slim-v4 - env: - DEFAULT_BRANCH: main - GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} - MARKDOWN_CONFIG_FILE: .markdownlint.json - # Only check new or edited files - VALIDATE_ALL_CODEBASE: false - # Fail on errors - DISABLE_ERRORS: false +--- +name: Lint + +on: + push: + pull_request: + +jobs: + super-lint: + name: Lint with Super-Linter + runs-on: ubuntu-latest + + steps: + # Checks out a copy of your repository on the ubuntu-latest machine + - name: Checkout code + uses: actions/checkout@v3 + with: + # Make sure the actual branch is checked out when running on PR + # ref: ${{ github.event.pull_request.head.sha }} + # Full git history needed to get proper list of changed files + fetch-depth: 0 + + # Runs the Super-Linter action + - name: Run Super-Linter on new changes + uses: docker://ghcr.io/github/super-linter:slim-v4 + env: + DEFAULT_BRANCH: main + GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} + MARKDOWN_CONFIG_FILE: .markdownlint.json + # Only check new or edited files + VALIDATE_ALL_CODEBASE: false + # Fail on errors + DISABLE_ERRORS: false diff --git a/.gitignore b/.gitignore new file mode 100644 index 0000000..c8b09b1 --- /dev/null +++ b/.gitignore @@ -0,0 +1,2 @@ +DT_flood/workflows/deltares_sfincs-cpu:sfincs-v2.0.3-Cauberg.sfincs +DT_flood/workflows/deltares_wflow:v0.7.3.sif \ No newline at end of file diff --git a/.prettierrc.toml b/.prettierrc.toml index cccd416..d2dc525 100644 --- a/.prettierrc.toml +++ b/.prettierrc.toml @@ -1,5 +1,5 @@ -# Configuration for prettier -# https://prettier.io/docs/en/configuration.html -proseWrap = "always" -tabWidth = 2 -printWidth = 80 +# Configuration for prettier +# https://prettier.io/docs/en/configuration.html +proseWrap = "always" +tabWidth = 2 +printWidth = 80 diff --git a/.vscode/settings.json b/.vscode/settings.json index 70025ed..5c7f43e 100644 --- a/.vscode/settings.json +++ b/.vscode/settings.json @@ -1,14 +1,14 @@ -{ - "markdownlint.config": { - "MD013": { - "line_length": 120, - "code_blocks": false, - "tables": false - }, - "MD014": false, - "MD024": false, - "MD026": { - "punctuation": ".,:;!" - } - } +{ + "markdownlint.config": { + "MD013": { + "line_length": 120, + "code_blocks": false, + "tables": false + }, + "MD014": false, + "MD024": false, + "MD026": { + "punctuation": ".,:;!" + } + } } \ No newline at end of file diff --git a/AUTHORS.md b/AUTHORS.md index 9050ef2..65b8a14 100644 --- a/AUTHORS.md +++ b/AUTHORS.md @@ -1,9 +1,9 @@ -# Authors - -## Maintainers - -Full Name \ - -## Contributors - -[All contributors](https://github.com/interTwin-eu/REPOSITORY/graphs/contributors) +# Authors + +## Maintainers + +Full Name \ + +## Contributors + +[All contributors](https://github.com/interTwin-eu/REPOSITORY/graphs/contributors) diff --git a/CHANGELOG b/CHANGELOG index f3064bf..e9246fa 100644 --- a/CHANGELOG +++ b/CHANGELOG @@ -1,12 +1,12 @@ -# Changelog - -All notable changes to this project will be documented in this file. - -The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/), -and this project adheres to -[Semantic Versioning](https://semver.org/spec/v2.0.0.html). - -## [Unreleased] - -## [X.X.XX] -- Change description (#PR_NUMBER) (AUTHOR) +# Changelog + +All notable changes to this project will be documented in this file. + +The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/), +and this project adheres to +[Semantic Versioning](https://semver.org/spec/v2.0.0.html). + +## [Unreleased] + +## [X.X.XX] +- Change description (#PR_NUMBER) (AUTHOR) diff --git a/CODEOWNERS b/CODEOWNERS index eec474f..8407f06 100644 --- a/CODEOWNERS +++ b/CODEOWNERS @@ -1,10 +1,10 @@ -# https://help.github.com/en/github/creating-cloning-and-archiving-repositories/about-code-owners -# https://github.blog/2017-07-06-introducing-code-owners/ - -# Assign code owners that will automatically get asked to review Pull Requests -# The last matching pattern takes the most precedence. - -# These owners will be the default owners for everything in the repo. -# Unless a later match takes precedence, they will be requested for -# review when someone opens a pull request. - +# https://help.github.com/en/github/creating-cloning-and-archiving-repositories/about-code-owners +# https://github.blog/2017-07-06-introducing-code-owners/ + +# Assign code owners that will automatically get asked to review Pull Requests +# The last matching pattern takes the most precedence. + +# These owners will be the default owners for everything in the repo. +# Unless a later match takes precedence, they will be requested for +# review when someone opens a pull request. + diff --git a/CONTRIBUTING.md b/CONTRIBUTING.md index cb1533f..e37ee6c 100644 --- a/CONTRIBUTING.md +++ b/CONTRIBUTING.md @@ -1,84 +1,84 @@ -# Contributing - -Thank you for taking the time to contribute to this project. The maintainers -greatly appreciate the interest of contributors and rely on continued engagement -with the community to ensure that this project remains useful. We would like to -take steps to put contributors in the best possible position to have their -contributions accepted. Please take a few moments to read this short guide on -how to contribute; bear in mind that contributions regarding how to best -contribute are also welcome. - -## Feedback and Questions - -If you wish to discuss anything related to the project, please open a -[GitHub issue](https://github.com/interTwin-eu/REPOSITORY/issues/new). - -## Contribution Process - -Before proposing a contribution via pull request (PR), ideally there is an open -issue describing the need for your contribution (refer to this issue number when -you submit the pull request). We have a 3 steps process for contributions. - -1. Fork the project if you have not, and commit changes to a git branch -1. Create a GitHub Pull Request for your change, following the instructions in - the pull request template. -1. Perform a [Code Review](#code-review-process) with the maintainers on the - pull request. - -### Pull Request Requirements - -1. **Explain your contribution in plain language.** To assist the maintainers in - understanding and appreciating your pull request, please use the template to - explain _why_ you are making this contribution, rather than just _what_ the - contribution entails. - -### Code Review Process - -Code review takes place in GitHub pull requests. See -[this article](https://docs.github.com/en/pull-requests/collaborating-with-pull-requests/proposing-changes-to-your-work-with-pull-requests/about-pull-requests) -if you're not familiar with GitHub Pull Requests. - -Once you open a pull request, maintainers will review your code using the -built-in code review process in GitHub PRs. The process at this point is as -follows: - -1. A maintainer will review your code and merge it if no changes are necessary. - Your change will be merged into the repository's `main` branch. -1. If a maintainer has feedback or questions on your changes then they will set - `request changes` in the review and provide an explanation. - -## Using git - -For collaboration purposes, it is best if you create a GitHub account and fork -the repository to your own account. Once you do this you will be able to push -your changes to your GitHub repository for others to see and use, and it will be -easier to send pull requests. - -### Branches and Commits - -You should submit your patch as a git branch named after the GitHub issue, such -as `#3`\. This is called a _topic branch_ and allows users to associate a branch -of code with the issue. - -It is a best practice to have your commit message have a _summary line_ that -includes the issue number, followed by an empty line and then a brief -description of the commit. This also helps other contributors understand the -purpose of changes to the code. - -```text - #3 - platform_family and style - - * use platform_family for platform checking - * update notifies syntax to "resource_type[resource_name]" instead of - resources() lookup - * GH-692 - delete config files dropped off by packages in conf.d - * dropped debian 4 support because all other platforms have the same - values, and it is older than "old stable" debian release -``` - -## Release cycle - -Main branch is always available. Tagged versions may be created as needed -following [Semantic Versioning](https://semver.org/) as far as applicable. - -**This file has been modified from the Chef Cookbook Contributing Guide**. +# Contributing + +Thank you for taking the time to contribute to this project. The maintainers +greatly appreciate the interest of contributors and rely on continued engagement +with the community to ensure that this project remains useful. We would like to +take steps to put contributors in the best possible position to have their +contributions accepted. Please take a few moments to read this short guide on +how to contribute; bear in mind that contributions regarding how to best +contribute are also welcome. + +## Feedback and Questions + +If you wish to discuss anything related to the project, please open a +[GitHub issue](https://github.com/interTwin-eu/REPOSITORY/issues/new). + +## Contribution Process + +Before proposing a contribution via pull request (PR), ideally there is an open +issue describing the need for your contribution (refer to this issue number when +you submit the pull request). We have a 3 steps process for contributions. + +1. Fork the project if you have not, and commit changes to a git branch +1. Create a GitHub Pull Request for your change, following the instructions in + the pull request template. +1. Perform a [Code Review](#code-review-process) with the maintainers on the + pull request. + +### Pull Request Requirements + +1. **Explain your contribution in plain language.** To assist the maintainers in + understanding and appreciating your pull request, please use the template to + explain _why_ you are making this contribution, rather than just _what_ the + contribution entails. + +### Code Review Process + +Code review takes place in GitHub pull requests. See +[this article](https://docs.github.com/en/pull-requests/collaborating-with-pull-requests/proposing-changes-to-your-work-with-pull-requests/about-pull-requests) +if you're not familiar with GitHub Pull Requests. + +Once you open a pull request, maintainers will review your code using the +built-in code review process in GitHub PRs. The process at this point is as +follows: + +1. A maintainer will review your code and merge it if no changes are necessary. + Your change will be merged into the repository's `main` branch. +1. If a maintainer has feedback or questions on your changes then they will set + `request changes` in the review and provide an explanation. + +## Using git + +For collaboration purposes, it is best if you create a GitHub account and fork +the repository to your own account. Once you do this you will be able to push +your changes to your GitHub repository for others to see and use, and it will be +easier to send pull requests. + +### Branches and Commits + +You should submit your patch as a git branch named after the GitHub issue, such +as `#3`\. This is called a _topic branch_ and allows users to associate a branch +of code with the issue. + +It is a best practice to have your commit message have a _summary line_ that +includes the issue number, followed by an empty line and then a brief +description of the commit. This also helps other contributors understand the +purpose of changes to the code. + +```text + #3 - platform_family and style + + * use platform_family for platform checking + * update notifies syntax to "resource_type[resource_name]" instead of + resources() lookup + * GH-692 - delete config files dropped off by packages in conf.d + * dropped debian 4 support because all other platforms have the same + values, and it is older than "old stable" debian release +``` + +## Release cycle + +Main branch is always available. Tagged versions may be created as needed +following [Semantic Versioning](https://semver.org/) as far as applicable. + +**This file has been modified from the Chef Cookbook Contributing Guide**. diff --git a/COPYRIGHT b/COPYRIGHT index b6b4697..20e71a6 100644 --- a/COPYRIGHT +++ b/COPYRIGHT @@ -1,4 +1,4 @@ -This project is licensed under MIT. - -Copyrights in this project are retained by their contributors. -No copyright assignment is required to contribute to this project. +This project is licensed under MIT. + +Copyrights in this project are retained by their contributors. +No copyright assignment is required to contribute to this project. diff --git a/Notebooks/utils/__init__.py b/DT_flood/__init__.py similarity index 100% rename from Notebooks/utils/__init__.py rename to DT_flood/__init__.py diff --git a/DT_flood/__pycache__/__init__.cpython-311.pyc b/DT_flood/__pycache__/__init__.cpython-311.pyc new file mode 100644 index 0000000..27d6cdf Binary files /dev/null and b/DT_flood/__pycache__/__init__.cpython-311.pyc differ diff --git a/Data/cyclone_database/test.txt b/DT_flood/utils/__init__.py similarity index 100% rename from Data/cyclone_database/test.txt rename to DT_flood/utils/__init__.py diff --git a/DT_flood/utils/__pycache__/__init__.cpython-310.pyc b/DT_flood/utils/__pycache__/__init__.cpython-310.pyc new file mode 100644 index 0000000..c903678 Binary files /dev/null and b/DT_flood/utils/__pycache__/__init__.cpython-310.pyc differ diff --git a/DT_flood/utils/__pycache__/__init__.cpython-311.pyc b/DT_flood/utils/__pycache__/__init__.cpython-311.pyc new file mode 100644 index 0000000..5ef5e76 Binary files /dev/null and b/DT_flood/utils/__pycache__/__init__.cpython-311.pyc differ diff --git a/DT_flood/utils/__pycache__/fa_scenario_utils.cpython-310.pyc b/DT_flood/utils/__pycache__/fa_scenario_utils.cpython-310.pyc new file mode 100644 index 0000000..c8aee69 Binary files /dev/null and b/DT_flood/utils/__pycache__/fa_scenario_utils.cpython-310.pyc differ diff --git a/DT_flood/utils/__pycache__/fa_scenario_utils.cpython-311.pyc b/DT_flood/utils/__pycache__/fa_scenario_utils.cpython-311.pyc new file mode 100644 index 0000000..d7927f4 Binary files /dev/null and b/DT_flood/utils/__pycache__/fa_scenario_utils.cpython-311.pyc differ diff --git a/DT_flood/utils/__pycache__/plot_utils.cpython-310.pyc b/DT_flood/utils/__pycache__/plot_utils.cpython-310.pyc new file mode 100644 index 0000000..a3200c4 Binary files /dev/null and b/DT_flood/utils/__pycache__/plot_utils.cpython-310.pyc differ diff --git a/DT_flood/utils/__pycache__/workflow_utils.cpython-310.pyc b/DT_flood/utils/__pycache__/workflow_utils.cpython-310.pyc new file mode 100644 index 0000000..f482929 Binary files /dev/null and b/DT_flood/utils/__pycache__/workflow_utils.cpython-310.pyc differ diff --git a/DT_flood/utils/__pycache__/workflow_utils.cpython-311.pyc b/DT_flood/utils/__pycache__/workflow_utils.cpython-311.pyc new file mode 100644 index 0000000..2e03b64 Binary files /dev/null and b/DT_flood/utils/__pycache__/workflow_utils.cpython-311.pyc differ diff --git a/Notebooks/utils/fa_scenario_utils.py b/DT_flood/utils/fa_scenario_utils.py similarity index 92% rename from Notebooks/utils/fa_scenario_utils.py rename to DT_flood/utils/fa_scenario_utils.py index f11f54f..c0d5523 100644 --- a/Notebooks/utils/fa_scenario_utils.py +++ b/DT_flood/utils/fa_scenario_utils.py @@ -2,6 +2,7 @@ import os from typing import Union from pathlib import Path +import pandas as pd from hydromt.data_catalog import DataCatalog @@ -58,7 +59,7 @@ def create_scenario_config(database: IDatabase, scenario_config: dict) -> IScena 'projection': scenario_config['projection']['name'], 'strategy': scenario_config['strategy']['name'], } - scenarios.create_scenario(attrs=scenario_dict, database=database) + return scenarios.create_scenario(attrs=scenario_dict, database=database) @@ -76,7 +77,13 @@ def create_scenario(database: IDatabase, scenario_config: dict) -> IScenario: ------- IScenario FloodAdapt Scenario object - """ + """ + + # Create Event, Projection, Strategy used in scenario + _ = create_event(database=database, scenario_config=scenario_config) + _ = create_projection(database=database, scenario_config=scenario_config) + _ = create_strategy(database=database, scenario_config=scenario_config) + # Load existing scenarios scenarios_existing = scenarios.get_scenarios(database) @@ -106,11 +113,14 @@ def create_event(database: IDatabase, scenario_config: dict) -> IEvent: """ # Load existing events events_existing = events.get_events(database) - # If necessary create new event, save it and return object, otherwise load existing and return object if not scenario_config["event"]["name"] in events_existing["name"]: event_new = create_event_config(database, scenario_config) events.save_event_toml(event_new, database) + if event_new.attrs.tide.timeseries_file == 'placeholder.csv': + with open(database.input_path/'events'/event_new.attrs.name/'placeholder.csv','w') as f: + df = pd.DataFrame({'placeholder': [0]}, index=(['00:00:00'])) + df.to_csv(f) return event_new else: return events.get_event(scenario_config["event"]["name"], database) @@ -167,16 +177,15 @@ def create_event_config(database: IDatabase, scenario_config: dict) -> IEvent: # Set waterlevel forcing type + tide_type = 'timeseries' + tide_dict = {'source': tide_type} if ( scenario_config["event"]["sfincs_forcing"]["waterlevel"] in dc.sources or Path(scenario_config["event"]["sfincs_forcing"]["waterlevel"]).suffix == '.nc' ): - tide_type = "model" + placeholder_path = database.input_path/'events'/scenario_config["event"]["name"]/'placeholder.csv' + tide_dict['timeseries_file'] = str(placeholder_path.name) else: - tide_type = 'timeseries' - - tide_dict = {'source': tide_type} - if tide_type == 'timeseries': tide_dict["timeseries_file"] = scenario_config["event"]["sfincs_forcing"]["waterlevel"] event_dict = { @@ -289,12 +298,12 @@ def create_strategy(database: IDatabase, scenario_config: dict) -> IStrategy: # If necessary create new strategy, save it and return object, otherwise load existing and return object if not scenario_config["strategy"]["name"] in strategies_existing['name']: - strategy_new = create_scenario_config(database, scenario_config) + strategy_new = create_strategy_config(database, scenario_config) strategies.save_strategy(strategy_new, database) return strategy_new - else: return strategies.get_strategy(scenario_config["strategy"]["name"]) + else: return strategies.get_strategy(scenario_config["strategy"]["name"], database) -def create_scenario_config(database: IDatabase, scenario_config: dict) -> IStrategy: +def create_strategy_config(database: IDatabase, scenario_config: dict) -> IStrategy: """Create FloodAdapt Strategy object from scenario configuration. Where necessary create new measures, otherwise use existing ones Parameters diff --git a/Notebooks/utils/plot_utils.py b/DT_flood/utils/plot_utils.py similarity index 100% rename from Notebooks/utils/plot_utils.py rename to DT_flood/utils/plot_utils.py diff --git a/DT_flood/utils/workflow_utils.py b/DT_flood/utils/workflow_utils.py new file mode 100644 index 0000000..48026c0 --- /dev/null +++ b/DT_flood/utils/workflow_utils.py @@ -0,0 +1,130 @@ +import os +import subprocess +import yaml +import tomli +from pathlib import Path +from typing import Union + +from flood_adapt.object_model.interface.database import IDatabase +from flood_adapt.object_model.interface.scenarios import IScenario + +from .fa_scenario_utils import init_scenario, create_scenario + + +def run_scenario( + database: Union[str, os.PathLike], + scenario_name: str, +) -> None: + + db, scen_init = init_scenario(database, scenario_name) + + scen_obj = create_scenario(db, scen_init) + + create_workflow_config(db, scen_obj) + run_fa_scenario_workflow(db, scen_obj) + + + +def create_workflow_config( + database: Union[str, os.PathLike, IDatabase], + scenario: Union[str, IScenario], + cwl_workflow: Union[str, os.PathLike] = None, + script_folder: Union[str, os.PathLike] = None, + # data_catalog: Union[str, os.PathLike] = Path("/home/wotromp/DestinE_workflows/deltares_data_wsl.yml") +) -> None: + """Writes Config file for CWL workflow to FloodAdapt database + + Parameters + ---------- + database : Union[str, os.PathLike, IDatabase] + FloodAdapt database containing the scenario + scenario : str + Name of scenario + cwl_workflow : Union[str, os.PathLike], optional + Path to cwl workflow description + script_folder : Union[str, os.PathLike], optional + Path to folder containing py script being called by workflows + data_catalog : Union[str, os.PathLike], optional + Path to data catalog needed by workflow, by default Path("/home/wotromp/DestinE_workflows/deltares_data_wsl.yml") + """ + + # Parse inputs + if type(script_folder) is str: + script_folder = Path(script_folder) + if type(scenario) is IScenario: + scenario = scenario.attrs.name + if type(database) is IDatabase: + database = database.input_path.parent + + if cwl_workflow is None: + cwl_workflow = Path(__file__).parents[1]/"workflows"/"run_fa_scenario.cwl" + else: + assert Path(cwl_workflow).exists(), "Workflow file does not exist!" + + if script_folder is None: + script_folder = Path(__file__).parents[1]/"workflows"/"pyscripts" + else: + assert Path(script_folder).exists(), "Script folder does not exist!" + + + # Check inputs + # assert Path(data_catalog).exists(), "Data catalog file does not exist!" + + + + config_fn = f"cwl_config_{scenario}.yml" + + # Generate cwl template + cmd = f"cwltool --make-template {str(cwl_workflow)} > {config_fn}" + subprocess.run(cmd, shell=True) + + with open(config_fn, 'r') as f: + cwl_config = yaml.load(f, Loader=yaml.FullLoader) + + script_inputs = [key for key in cwl_config if 'script' in key] + for input in script_inputs: + path = list(script_folder.glob(f"{input.split('_', maxsplit=1)[1]}*.py"))[0] + cwl_config[input]["path"] = str(path) + + cwl_config['scenario'] = scenario + cwl_config["fa_database"]['path'] = str(database) + # cwl_config["data_catalog"]['path'] = str(data_catalog) + + print(f"Write Config file {config_fn} to folder {database/config_fn}") + with open(database/config_fn, 'w+') as f: + yaml.dump(cwl_config, f, default_flow_style=False, sort_keys=True) + + +def run_fa_scenario_workflow( + database: Union[str, os.PathLike, IDatabase], + scenario: Union[str, IScenario], + ) -> None: + """Execute FloodAdapt scenario + Path to CWL workflow description is hardcoded relative to database location + + Parameters + ---------- + database : Union[str, os.PathLike, IDatabase] + FloodAdapt database being used + scenario : Union[str, IScenario] + Name of scenario to execute + """ + + if type(database) is IDatabase: + database = database.input_path.parent + if type(scenario) is IScenario: + scenario = scenario.attrs.name + + workflow_fn = Path(__file__).parents[1]/"workflows"/"run_fa_scenario.cwl" + config_fn = database/f"cwl_config_{scenario}.yml" + cmd_validate = f"cwltool --validate {str(workflow_fn)} {str(config_fn)}" + print("Validating workflow") + print(f"Running {cmd_validate}") + result = subprocess.run(cmd_validate, shell=True) + assert result.returncode == 0, "CWL Validation Error, exit workflow execution" + + + cmd_run = f"cwltool --outdir {str(database.parent)} {str(workflow_fn)} {str(config_fn)}" + print("Executing workflow") + print(f"Running {cmd_run}") + subprocess.run(cmd_run, shell=True) diff --git a/DT_flood/workflows/__init__.py b/DT_flood/workflows/__init__.py new file mode 100644 index 0000000..e69de29 diff --git a/workflows/cwl/collect_in_dir.cwl b/DT_flood/workflows/cwl/collect_in_dir.cwl similarity index 100% rename from workflows/cwl/collect_in_dir.cwl rename to DT_flood/workflows/cwl/collect_in_dir.cwl diff --git a/workflows/cwl/fa_sfincs_docker_config.yml b/DT_flood/workflows/cwl/fa_sfincs_docker_config.yml similarity index 100% rename from workflows/cwl/fa_sfincs_docker_config.yml rename to DT_flood/workflows/cwl/fa_sfincs_docker_config.yml diff --git a/workflows/cwl/fa_sfincs_workflow.cwl b/DT_flood/workflows/cwl/fa_sfincs_workflow.cwl similarity index 100% rename from workflows/cwl/fa_sfincs_workflow.cwl rename to DT_flood/workflows/cwl/fa_sfincs_workflow.cwl diff --git a/workflows/cwl/fa_sfincs_workflow_docker.cwl b/DT_flood/workflows/cwl/fa_sfincs_workflow_docker.cwl similarity index 90% rename from workflows/cwl/fa_sfincs_workflow_docker.cwl rename to DT_flood/workflows/cwl/fa_sfincs_workflow_docker.cwl index f7c97db..ee0cbf7 100644 --- a/workflows/cwl/fa_sfincs_workflow_docker.cwl +++ b/DT_flood/workflows/cwl/fa_sfincs_workflow_docker.cwl @@ -13,9 +13,9 @@ inputs: arrange_script: File outputs: - fa_database: + fa_database_out: type: Directory - outputSource: arrange_folder/fa_database + outputSource: arrange_folder/fa_database_out steps: @@ -25,12 +25,12 @@ steps: scenario: scenario pyscript: sfincs_update_script out: - [fa_database] + [fa_database_out] run: ./update_sfincs.cwl fetch_sfincs_dir: in: - fa_database: setup_sfincs/fa_database + fa_database: setup_sfincs/fa_database_out scenario: scenario out: [sfincs_dir] @@ -58,12 +58,12 @@ steps: source: fetch_sfincs_dir/sfincs_dir valueFrom: $(self.listing) out: - [sfincs_files] + [sfincs_files_out] run: ./run_sfincs_docker.cwl fetch_sfincs_files: in: - files: run_sfincs/sfincs_files + files: run_sfincs/sfincs_files_out dir_name: default: "overland" out: @@ -77,7 +77,7 @@ steps: fa_database: fa_database scenario: scenario out: - [fa_database] + [fa_database_out] run: class: CommandLineTool baseCommand: ["python"] @@ -105,7 +105,7 @@ steps: inputBinding: position: 4 outputs: - fa_database: + fa_database_out: type: Directory outputBinding: glob: "$(inputs.fa_database.basename)" \ No newline at end of file diff --git a/workflows/cwl/fa_wflow_workflow.cwl b/DT_flood/workflows/cwl/fa_wflow_workflow.cwl similarity index 67% rename from workflows/cwl/fa_wflow_workflow.cwl rename to DT_flood/workflows/cwl/fa_wflow_workflow.cwl index 18e4e58..b74e6a4 100644 --- a/workflows/cwl/fa_wflow_workflow.cwl +++ b/DT_flood/workflows/cwl/fa_wflow_workflow.cwl @@ -4,13 +4,13 @@ class: Workflow inputs: fa_database: Directory scenario: string - data_catalog: File + # data_catalog: File wflow_update_script: File outputs: - fa_database: + fa_database_out: type: Directory - outputSource: run_wflow_event/fa_database + outputSource: run_wflow_event/fa_database_out steps: setup_wflow_warmup: @@ -18,42 +18,42 @@ steps: pyscript: wflow_update_script fa_database: fa_database scenario: scenario - data_catalog: data_catalog + # data_catalog: data_catalog mode: default: "warmup" out: - [fa_database] + [fa_database_out] run: ./update_wflow_warump.cwl setup_wflow_event: in: pyscript: wflow_update_script - fa_database: setup_wflow_warmup/fa_database + fa_database: setup_wflow_warmup/fa_database_out scenario: scenario - data_catalog: data_catalog + # data_catalog: data_catalog mode: default: "event" out: - [fa_database] + [fa_database_out] run: ./update_wflow_warump.cwl run_wflow_warmup: in: - fa_database: setup_wflow_event/fa_database + fa_database: setup_wflow_event/fa_database_out scenario: scenario mode: default: "warmup" out: - [fa_database] + [fa_database_out] run: ./run_wflow.cwl run_wflow_event: in: - fa_database: run_wflow_warmup/fa_database + fa_database: run_wflow_warmup/fa_database_out scenario: scenario mode: default: "event" out: - [fa_database] + [fa_database_out] run: ./run_wflow.cwl diff --git a/workflows/cwl/init_fa_scenario.cwl b/DT_flood/workflows/cwl/init_fa_scenario.cwl similarity index 96% rename from workflows/cwl/init_fa_scenario.cwl rename to DT_flood/workflows/cwl/init_fa_scenario.cwl index 8ccb7c3..0b51fba 100644 --- a/workflows/cwl/init_fa_scenario.cwl +++ b/DT_flood/workflows/cwl/init_fa_scenario.cwl @@ -25,7 +25,7 @@ inputs: position: 3 outputs: - fa_database: + fa_database_out: type: Directory outputBinding: glob: "$(inputs.fa_database.basename)" \ No newline at end of file diff --git a/workflows/cwl/run_fiat.cwl b/DT_flood/workflows/cwl/run_fiat.cwl similarity index 97% rename from workflows/cwl/run_fiat.cwl rename to DT_flood/workflows/cwl/run_fiat.cwl index e256273..6211ea3 100644 --- a/workflows/cwl/run_fiat.cwl +++ b/DT_flood/workflows/cwl/run_fiat.cwl @@ -29,7 +29,7 @@ inputs: position: 3 outputs: - fa_database: + fa_database_out: type: Directory outputBinding: glob: "$(inputs.fa_database.basename)" \ No newline at end of file diff --git a/workflows/cwl/run_sfincs.cwl b/DT_flood/workflows/cwl/run_sfincs.cwl similarity index 100% rename from workflows/cwl/run_sfincs.cwl rename to DT_flood/workflows/cwl/run_sfincs.cwl diff --git a/workflows/cwl/run_sfincs_docker.cwl b/DT_flood/workflows/cwl/run_sfincs_docker.cwl similarity index 96% rename from workflows/cwl/run_sfincs_docker.cwl rename to DT_flood/workflows/cwl/run_sfincs_docker.cwl index c9f1b1a..4e5602d 100644 --- a/workflows/cwl/run_sfincs_docker.cwl +++ b/DT_flood/workflows/cwl/run_sfincs_docker.cwl @@ -22,7 +22,7 @@ inputs: stdout: sfincs.log outputs: - sfincs_files: + sfincs_files_out: type: type: array items: diff --git a/workflows/cwl/run_sfincs_docker_config.yml b/DT_flood/workflows/cwl/run_sfincs_docker_config.yml similarity index 100% rename from workflows/cwl/run_sfincs_docker_config.yml rename to DT_flood/workflows/cwl/run_sfincs_docker_config.yml diff --git a/workflows/cwl/run_sfincs_docker_workflow.cwl b/DT_flood/workflows/cwl/run_sfincs_docker_workflow.cwl similarity index 100% rename from workflows/cwl/run_sfincs_docker_workflow.cwl rename to DT_flood/workflows/cwl/run_sfincs_docker_workflow.cwl diff --git a/workflows/cwl/run_sfincs_singularity.cwl b/DT_flood/workflows/cwl/run_sfincs_singularity.cwl similarity index 100% rename from workflows/cwl/run_sfincs_singularity.cwl rename to DT_flood/workflows/cwl/run_sfincs_singularity.cwl diff --git a/workflows/cwl/run_wflow.cwl b/DT_flood/workflows/cwl/run_wflow.cwl similarity index 96% rename from workflows/cwl/run_wflow.cwl rename to DT_flood/workflows/cwl/run_wflow.cwl index bad319f..e884308 100644 --- a/workflows/cwl/run_wflow.cwl +++ b/DT_flood/workflows/cwl/run_wflow.cwl @@ -25,7 +25,7 @@ inputs: outputs: - fa_database: + fa_database_out: type: Directory outputBinding: glob: "$(inputs.fa_database.basename)" \ No newline at end of file diff --git a/workflows/cwl/run_wflow_docker.cwl b/DT_flood/workflows/cwl/run_wflow_docker.cwl similarity index 100% rename from workflows/cwl/run_wflow_docker.cwl rename to DT_flood/workflows/cwl/run_wflow_docker.cwl diff --git a/workflows/cwl/run_wflow_docker_config.yml b/DT_flood/workflows/cwl/run_wflow_docker_config.yml similarity index 100% rename from workflows/cwl/run_wflow_docker_config.yml rename to DT_flood/workflows/cwl/run_wflow_docker_config.yml diff --git a/workflows/cwl/run_wflow_singularity.cwl b/DT_flood/workflows/cwl/run_wflow_singularity.cwl similarity index 100% rename from workflows/cwl/run_wflow_singularity.cwl rename to DT_flood/workflows/cwl/run_wflow_singularity.cwl diff --git a/DT_flood/workflows/cwl/sketch_expressiontools.cwl b/DT_flood/workflows/cwl/sketch_expressiontools.cwl new file mode 100644 index 0000000..a12eefe --- /dev/null +++ b/DT_flood/workflows/cwl/sketch_expressiontools.cwl @@ -0,0 +1,57 @@ + class: CommandLineTool + baseCommand: ["echo"] + requirements: + InlineJavascriptRequirement: {} + InitialWorkDirRequirement: + listing: + - $(inputs.in_folder) + inputs: + in_folder: + type: Directory + fa_database: + type: Directory + scenario: + type: string + # new_location: + # type: string + outputs: + out_folder: + type: Directory + outputBinding: + glob: "." + outputEval: | + ${ + self[0].basename = inputs.fa_database.basename+"/output/Scenarios/"+inputs.scenario+"/Flooding/simulations/"+inputs.in_folder.basename + return self + } + + + + class: ExpressionTool + requirements: + InlineJavascriptRequirement: {} + InitialWorkDirRequirement: + listing: + - $(inputs.fa_database) + - $(inputs.in_folder) + + inputs: + fa_database: + type: Directory + in_folder: + type: Directory + scenario: + type: string + outputs: + fa_database: + type: Directory[] + expression: | + ${ + // dir1 = inputs.fa_database; + // dir2 = inputs.in_folder; + // dir2.basename = dir1.basename+"/output/Scenarios/"+inputs.scenario+"/Flooding/simulations/"+inputs.in_folder.basename; + return {"fa_database": [ + {"class": "Directory", "listing": inputs.fa_database.listing, "basename": inputs.fa_database.basename}, + {"class": "Directory", "listing": inputs.in_folder.listing, "basename": inputs.fa_database.basename+"/output/Scenarios/"+inputs.scenario+"/Flooding/simulations/"+inputs.in_folder.basename} + ]}; + } \ No newline at end of file diff --git a/workflows/cwl/update_fiat.cwl b/DT_flood/workflows/cwl/update_fiat.cwl similarity index 96% rename from workflows/cwl/update_fiat.cwl rename to DT_flood/workflows/cwl/update_fiat.cwl index ab1db02..d6e7816 100644 --- a/workflows/cwl/update_fiat.cwl +++ b/DT_flood/workflows/cwl/update_fiat.cwl @@ -27,7 +27,7 @@ inputs: outputs: - fa_database: + fa_database_out: type: Directory outputBinding: glob: "$(inputs.fa_database.basename)" \ No newline at end of file diff --git a/workflows/cwl/update_sfincs.cwl b/DT_flood/workflows/cwl/update_sfincs.cwl similarity index 96% rename from workflows/cwl/update_sfincs.cwl rename to DT_flood/workflows/cwl/update_sfincs.cwl index ab1db02..d6e7816 100644 --- a/workflows/cwl/update_sfincs.cwl +++ b/DT_flood/workflows/cwl/update_sfincs.cwl @@ -27,7 +27,7 @@ inputs: outputs: - fa_database: + fa_database_out: type: Directory outputBinding: glob: "$(inputs.fa_database.basename)" \ No newline at end of file diff --git a/workflows/cwl/update_wflow_warump.cwl b/DT_flood/workflows/cwl/update_wflow_warump.cwl similarity index 85% rename from workflows/cwl/update_wflow_warump.cwl rename to DT_flood/workflows/cwl/update_wflow_warump.cwl index abf770c..8886972 100644 --- a/workflows/cwl/update_wflow_warump.cwl +++ b/DT_flood/workflows/cwl/update_wflow_warump.cwl @@ -23,17 +23,17 @@ inputs: type: string inputBinding: position: 3 - data_catalog: - type: File - inputBinding: - position: 4 + # data_catalog: + # type: File + # inputBinding: + # position: 4 mode: type: string inputBinding: - position: 5 + position: 4 outputs: - fa_database: + fa_database_out: type: Directory outputBinding: glob: "$(inputs.fa_database.basename)" \ No newline at end of file diff --git a/DT_flood/workflows/pyscripts/__init__.py b/DT_flood/workflows/pyscripts/__init__.py new file mode 100644 index 0000000..e69de29 diff --git a/workflows/pyscripts/arrange_fa_folders.py b/DT_flood/workflows/pyscripts/arrange_fa_folders.py similarity index 100% rename from workflows/pyscripts/arrange_fa_folders.py rename to DT_flood/workflows/pyscripts/arrange_fa_folders.py diff --git a/DT_flood/workflows/pyscripts/init_fa_database.py b/DT_flood/workflows/pyscripts/init_fa_database.py new file mode 100644 index 0000000..4b60682 --- /dev/null +++ b/DT_flood/workflows/pyscripts/init_fa_database.py @@ -0,0 +1,21 @@ +from pathlib import Path +from sys import argv +from os import makedirs +from DT_flood.utils.fa_scenario_utils import init_scenario, create_scenario + +# scenario_fn = Path(argv[1]) /(argv[2]+"_toplevel.toml") + +database, scenario = init_scenario(Path(argv[1]), (argv[2]+"_toplevel.toml")) + +new_scenario = create_scenario(database, scenario) + +new_scenario.init_object_model() + +if not scenario.results_path.exists(): + print(f"Creating output folder at {scenario.results_path}") + makedirs(scenario.results_path) +else: + print(f"Output folder already exists at {scenario.results_path}") + +# print("Preparing SFINCS configuration") +# scenario.direct_impacts.hazard.preprocess_sfincs() \ No newline at end of file diff --git a/workflows/pyscripts/update_wflow_event.py b/DT_flood/workflows/pyscripts/old/update_wflow_event.py similarity index 100% rename from workflows/pyscripts/update_wflow_event.py rename to DT_flood/workflows/pyscripts/old/update_wflow_event.py diff --git a/workflows/pyscripts/update_wflow_warmup.py b/DT_flood/workflows/pyscripts/old/update_wflow_warmup.py similarity index 100% rename from workflows/pyscripts/update_wflow_warmup.py rename to DT_flood/workflows/pyscripts/old/update_wflow_warmup.py diff --git a/workflows/pyscripts/run_fiat.py b/DT_flood/workflows/pyscripts/run_fiat.py similarity index 100% rename from workflows/pyscripts/run_fiat.py rename to DT_flood/workflows/pyscripts/run_fiat.py diff --git a/workflows/pyscripts/run_sfincs.py b/DT_flood/workflows/pyscripts/run_sfincs.py similarity index 100% rename from workflows/pyscripts/run_sfincs.py rename to DT_flood/workflows/pyscripts/run_sfincs.py diff --git a/workflows/pyscripts/run_wflow.py b/DT_flood/workflows/pyscripts/run_wflow.py similarity index 100% rename from workflows/pyscripts/run_wflow.py rename to DT_flood/workflows/pyscripts/run_wflow.py diff --git a/workflows/pyscripts/update_fiat.py b/DT_flood/workflows/pyscripts/update_fiat.py similarity index 59% rename from workflows/pyscripts/update_fiat.py rename to DT_flood/workflows/pyscripts/update_fiat.py index a663afe..406c7f0 100644 --- a/workflows/pyscripts/update_fiat.py +++ b/DT_flood/workflows/pyscripts/update_fiat.py @@ -1,6 +1,7 @@ from pathlib import Path from sys import argv -from flood_adapt.object_model.scenario import Scenario + +from DT_flood.utils.fa_scenario_utils import init_scenario def tree(directory): @@ -12,12 +13,20 @@ def tree(directory): tree(Path(argv[1])) -scenario_fn = Path(argv[1]) / "input" / "scenarios" / argv[2] / (argv[2]+".toml") -scenario = Scenario.load_file(scenario_fn) +# scenario_fn = Path(argv[1]) / (argv[2]+"_toplevel.toml") + +database, scenario = init_scenario(Path(argv[1]), (argv[2]+"_toplevel.toml")) -scenario.init_object_model() +scenario_obj = database.get_scenario(scenario['name']) + +scenario_obj.init_object_model() # print(f"Scenario database path: {scenario.database_input_path}") +print("Downscaling and writing floodmap") +scenario.direct_impacts.hazard.write_floodmap_geotiff() +scenario.direct_impacts.hazard._set_sfincs_map_path(mode='single_event') +print(f"Floodmap written to {scenario.direct_impacts.hazard.sfincs_map_path}") + print("Preparing FIAT configuration") scenario.direct_impacts.preprocess_fiat() diff --git a/DT_flood/workflows/pyscripts/update_sfincs.py b/DT_flood/workflows/pyscripts/update_sfincs.py new file mode 100644 index 0000000..5030606 --- /dev/null +++ b/DT_flood/workflows/pyscripts/update_sfincs.py @@ -0,0 +1,77 @@ +from pathlib import Path +from sys import argv +from datetime import datetime + +from hydromt.log import setuplog +from hydromt_wflow import WflowModel +from hydromt_sfincs import SfincsModel +from hydromt_sfincs.sfincs_input import SfincsInput +from DT_flood.utils.fa_scenario_utils import init_scenario +# from flood_adapt.object_model.scenario import Scenario + +database, scenario = init_scenario(argv[1], (argv[2]+"_toplevel.toml")) + +# scenario_fn = fa_database_fn / "input" / "scenarios" / argv[2] / (argv[2]+".toml") + +wflow_path = database.output_path / "Scenarios" / argv[2] / "Flooding" / "simulations" / "wflow_event" +sfincs_out_path = database.output_path / "Scenarios" / argv[2] / "Flooding" / "simulations" / "overland" + +sfincs_path = database.static_path / "templates" / database.site.attrs.sfincs.overland_model + +start_time = datetime.strptime(scenario['event']['stasrt_time'],"%Y-%m-%d %H:%M:%S") +end_time = datetime.strptime(scenario['event']['end_time'],"%Y-%m-%d %H:%M:%S") + +print("Reading base SFINCS model") + +sf = SfincsModel( + root=sfincs_path, + mode='r', + data_catalog=scenario['event']['data_catalogues'] +) +sf.set_root(sfincs_out_path, mode='w+') + +print("Set SFINCS timing and forcing") +sf.setup_config( + **{ + "tref": datetime.strftime(start_time, "%Y%m%d %H%M%"), + "tstart": datetime.strftime(start_time, "%Y%m%d %H%M%"), + "tstop": datetime.strftime(end_time, "%Y%m%d %H%M%"), + } +) + +sf.setup_waterlevel_forcing(geodataset=scenario['event']['sfincs_forcing']['waterlevel'],buffer=2000) + +sf.setup_precip_forcing_from_grid(precip=scenario['event']['sfincs_forcing']['meteo'], aggregate=False) +sf.setup_wind_forcing_from_grid(scenario['event']['sfincs_forcing']['meteo']) +sf.setup_pressure_forcing_from_grid(scenario['event']['sfincs_forcing']['meteo']) + +print("Write SFINCS to output folder") +sf.write() + +print(f"Updating SFINCS model for Scenario {argv[2]} with discharge from WFLOW model at {str(wflow_path)}") + +logger = setuplog("Update overland SFINCS", log_level=10) +wf = WflowModel( + root=wflow_path, + mode="r", + logger=logger +) +wf.read() + +inp = SfincsInput.from_file(sfincs_out_path/"sfincs.inp") +config = inp.to_dict() + +reftime = config["tref"] +df = wf.results['netcdf']["Q_src"].to_pandas() +df.index = (df.index - reftime).total_seconds() +df.to_csv( + sfincs_path/"sfincs.dis", + sep = " ", + header=False, +) + +config.update({"disfile": "sfincs.dis"}) +inp = SfincsInput.from_dict(config) +inp.write(inp_fn=sfincs_out_path/"sfincs.inp") + + diff --git a/workflows/pyscripts/update_wflow.py b/DT_flood/workflows/pyscripts/update_wflow.py similarity index 69% rename from workflows/pyscripts/update_wflow.py rename to DT_flood/workflows/pyscripts/update_wflow.py index 950b0c2..771de16 100644 --- a/workflows/pyscripts/update_wflow.py +++ b/DT_flood/workflows/pyscripts/update_wflow.py @@ -2,6 +2,7 @@ from sys import argv from datetime import datetime from datetime import timedelta +import tomli from hydromt.log import setuplog from hydromt_wflow import WflowModel @@ -9,21 +10,21 @@ from flood_adapt.object_model.scenario import Scenario fa_database_fn = Path(argv[1]) -scenario_fn = fa_database_fn / "input" / "scenarios" / argv[2] / (argv[2]+".toml") -data_catalog_fn = Path(argv[3]) -mode = argv[4] +scenario_fn = fa_database_fn / (argv[2]+"_toplevel.toml") +# data_catalog_fn = Path(argv[3]) +mode = argv[3] print(f"Configuring WFlow event run for FloodAdapt Database {fa_database_fn.stem} with scenario {argv[2]}") -scenario = Scenario.load_file(scenario_fn) -scenario.init_object_model() +with open(scenario_fn, 'rb') as f: + scenario = tomli.load(f) wflow_root = fa_database_fn / 'static' / 'templates' / 'wflow' logger = setuplog("update_wflow", log_level=10) wf = WflowModel( root=wflow_root, - data_libs=data_catalog_fn, + data_libs=scenario['event']['data_catalogues'], mode='r', logger=logger, ) @@ -31,9 +32,10 @@ if mode=="warmup": print("Updating WFlow model for warmup run") - endtime = datetime.strptime(scenario.direct_impacts.hazard.event.attrs.time.start_time, "%Y%m%d %H%M%S") + endtime = datetime.strptime(scenario['event']['start_time'], "%Y-%m-%d %H:%M:%S") starttime = endtime - timedelta(days=365) - forcing_fn = "era5_daily" + precip_fn = scenario['event']['wflow_forcing']['precip_warmup'] + pet_fn = scenario['event']['wflow_forcing']['pet_warmup'] opt = { "setup_config": { "starttime": datetime.strftime(starttime, "%Y-%m-%dT%H:%M:%S"), @@ -46,9 +48,10 @@ } elif mode == "event": print("Updating WFlow model for event run") - starttime = datetime.strptime(scenario.direct_impacts.hazard.event.attrs.time.start_time, "%Y%m%d %H%M%S") - endtime = datetime.strptime(scenario.direct_impacts.hazard.event.attrs.time.end_time, "%Y%m%d %H%M%S") - forcing_fn = "era5_hourly" + starttime = datetime.strptime(scenario['event']['start_time'], "%Y-%m-%d %H:%M:%S") + endtime = datetime.strptime(scenario['event']['end_time'], "%Y-%m-%d %H:%M:%S") + precip_fn = scenario['event']['wflow_forcing']['precip_event'] + pet_fn = scenario['event']['wflow_forcing']['pet_event'] opt = { "setup_config": { "starttime": datetime.strftime(starttime, "%Y-%m-%dT%H:%M:%S"), @@ -64,16 +67,16 @@ forcing_config = { "setup_precip_forcing": { - "precip_fn": forcing_fn, + "precip_fn": precip_fn, "precip_clim_fn": None, }, "setup_temp_pet_forcing": { - "temp_pet_fn": forcing_fn, + "temp_pet_fn": pet_fn, "press_correction": True, "temp_correction": True, "pet_method": "debruin", "skip_pet": False, - "dem_forcing_fn": "era5_orography", + "dem_forcing_fn": scenario['event']['wflow_forcing']['orography'], } } opt.update(forcing_config) diff --git a/DT_flood/workflows/run_fa_scenario.cwl b/DT_flood/workflows/run_fa_scenario.cwl new file mode 100644 index 0000000..e8cd040 --- /dev/null +++ b/DT_flood/workflows/run_fa_scenario.cwl @@ -0,0 +1,73 @@ +cwlVersion: v1.2 +class: Workflow + +requirements: + SubworkflowFeatureRequirement: {} + +inputs: + fa_database: Directory + scenario: string + # data_catalog: File + script_init: File + script_update_wflow: File + script_update_sfincs: File + script_arrange: File + script_update_fiat: File + script_run_fiat: File + +outputs: + fa_database_out: + type: Directory + outputSource: run_fiat/fa_database_out + + +steps: + init_scenario: + in: + pyscript: script_init + fa_database: fa_database + scenario: scenario + out: + [fa_database_out] + run: + ./cwl/init_fa_scenario.cwl + run_wflow: + in: + fa_database: init_scenario/fa_database_out + scenario: scenario + # data_catalog: data_catalog + wflow_update_script: script_update_wflow + out: + [fa_database_out] + run: + ./cwl/fa_wflow_workflow.cwl + + run_sfincs: + in: + fa_database: run_wflow/fa_database_out + scenario: scenario + sfincs_update_script: script_update_sfincs + arrange_script: script_arrange + out: + [fa_database_out] + run: + ./cwl/fa_sfincs_workflow_docker.cwl + update_fiat: + in: + fa_database: run_sfincs/fa_database_out + scenario: scenario + pyscript: script_update_fiat + out: + [fa_database_out] + run: + ./cwl/update_fiat.cwl + run_fiat: + in: + fa_database: update_fiat/fa_database_out + scenario: scenario + pyscript: script_run_fiat + out: + [fa_database_out] + run: + ./cwl/run_fiat.cwl + diff --git a/workflows/run_fa_scenario_config.yml b/DT_flood/workflows/run_fa_scenario_config.yml similarity index 82% rename from workflows/run_fa_scenario_config.yml rename to DT_flood/workflows/run_fa_scenario_config.yml index c8c2016..987dd17 100644 --- a/workflows/run_fa_scenario_config.yml +++ b/DT_flood/workflows/run_fa_scenario_config.yml @@ -5,21 +5,21 @@ scenario: "Empty_Event_current_no_measures" data_catalog: class: File path: "/home/wotromp/DestinE_workflows/deltares_data_wsl.yml" -init_script: +script_init: class: File path: "./pyscripts/init_fa_database.py" -wflow_update_script: +script_update_wflow: class: File path: "./pyscripts/update_wflow.py" -sfincs_update_script: +script_update_sfincs: class: File path: "./pyscripts/update_sfincs.py" -arrange_script: +script_arrange: class: File path: "./pyscripts/arrange_fa_folders.py" -fiat_update_script: +script_update_fiat: class: File path: "./pyscripts/update_fiat.py" -fiat_run_script: +script_run_fiat: class: File path: "./pyscripts/run_fiat.py" \ No newline at end of file diff --git a/Data/damage_functions/erosion/ft/GL000.csv b/Data/damage_functions/erosion/ft/GL000.csv deleted file mode 100644 index f836845..0000000 --- a/Data/damage_functions/erosion/ft/GL000.csv +++ /dev/null @@ -1,1002 +0,0 @@ -Water Depth [ft],Factor -0.0,0.0 -0.0328,1 -0.0656,1 -0.0984,1 -0.1312,1 -0.164,1 -0.1969,1 -0.2297,1 -0.2625,1 -0.2953,1 -0.3281,1 -0.3609,1 -0.3937,1 -0.4265,1 -0.4593,1 -0.4921,1 -0.5249,1 -0.5577,1 -0.5906,1 -0.6234,1 -0.6562,1 -0.689,1 -0.7218,1 -0.7546,1 -0.7874,1 -0.8202,1 -0.853,1 -0.8858,1 -0.9186,1 -0.9514,1 -0.9843,1 -10.171,10 -10.499,10 -10.827,10 -11.155,10 -11.483,10 -11.811,10 -12.139,10 -12.467,10 -12.795,10 -13.123,10 -13.451,10 -1.378,10 -14.108,10 -14.436,10 -14.764,10 -15.092,10 -1.542,10 -15.748,10 -16.076,10 -16.404,10 -16.732,10 -1.706,10 -17.388,10 -17.717,10 -18.045,10 -18.373,10 -18.701,10 -19.029,10 -19.357,10 -19.685,10 -20.013,10 -20.341,10 -20.669,10 -20.997,10 -21.325,10 -21.654,10 -21.982,10 -2.231,10 -22.638,10 -22.966,10 -23.294,10 -23.622,10 -2.395,10 -24.278,10 -24.606,10 -24.934,10 -25.262,10 -25.591,10 -25.919,10 -26.247,10 -26.575,10 -26.903,10 -27.231,10 -27.559,10 -27.887,10 -28.215,10 -28.543,10 -28.871,10 -29.199,10 -29.528,10 -29.856,10 -30.184,10 -30.512,10 -3.084,10 -31.168,10 -31.496,10 -31.824,10 -32.152,10 -3.248,10 -32.808,10 -33.136,10 -33.465,10 -33.793,10 -34.121,10 -34.449,10 -34.777,10 -35.105,10 -35.433,10 -35.761,10 -36.089,10 -36.417,10 -36.745,10 -37.073,10 -37.402,10 -3.773,10 -38.058,10 -38.386,10 -38.714,10 -39.042,10 -3.937,10 -39.698,10 -40.026,10 -40.354,10 -40.682,10 -4.101,10 -41.339,10 -41.667,10 -41.995,10 -42.323,10 -42.651,10 -42.979,10 -43.307,10 -43.635,10 -43.963,10 -44.291,10 -44.619,10 -44.948,10 -45.276,10 -45.604,10 -45.932,10 -4.626,10 -46.588,10 -46.916,10 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a/Data/damage_functions/flooding/AllDDF_HAZUS.xlsx and /dev/null differ diff --git a/Data/damage_functions/flooding/JRC_damage_functions.csv b/Data/damage_functions/flooding/JRC_damage_functions.csv deleted file mode 100644 index b0d1a72..0000000 --- a/Data/damage_functions/flooding/JRC_damage_functions.csv +++ /dev/null @@ -1,36 +0,0 @@ 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-central 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diff --git a/Data/damage_functions/flooding/JRC_damage_functions_calculation.xlsx b/Data/damage_functions/flooding/JRC_damage_functions_calculation.xlsx deleted file mode 100644 index cc53358..0000000 Binary files a/Data/damage_functions/flooding/JRC_damage_functions_calculation.xlsx and /dev/null differ diff --git a/Data/damage_functions/flooding/JRC_damage_functions_linking.csv b/Data/damage_functions/flooding/JRC_damage_functions_linking.csv deleted file mode 100644 index 6f71129..0000000 --- a/Data/damage_functions/flooding/JRC_damage_functions_linking.csv +++ /dev/null @@ -1,4 +0,0 @@ -FIAT Damage Function Name,Exposure Link,Damage Type,type -residential,residential,total,residential -commercial,commercial,total,commercial -industrial,industrial,total,industrial diff --git a/Data/max_potential_damages/JRC_base_damage_values.csv b/Data/max_potential_damages/JRC_base_damage_values.csv deleted file mode 100644 index 60c698e..0000000 --- a/Data/max_potential_damages/JRC_base_damage_values.csv +++ /dev/null @@ -1,249 +0,0 @@ -Country,ISO A3 code,Construction Cost Residential (2010 €),Construction Cost Commercial (2010 €),Construction Cost Industrial (2010 €),GDP per capita (2010 US$) -Afghanistan,AFG,275.790831,323.1586611,241.0331217,561.1976175 -Albania,ALB,597.450818,662.0776912,462.6412974,4175.121638 -Algeria,DZA,606.945797,671.8348045,468.835172,4349.569325 -American Samoa,ASM,0,0,0, -Andorra,AND,0,0,0, -Angola,AGO,599.8424625,664.5364111,464.2028853,4218.649126 -Antigua and Barbuda,ATG,925.8358632,994.0579546,669.4173335,13017.31039 -Argentina,ARG,881.5030426,949.8160048,642.2775019,11460.37615 -Armenia,ARM,534.3491473,596.9397752,421.0716996,3124.784854 -Aruba,ABW,1177.283822,1242.30466,819.8028211,24289.14152 -Australia,AUS,1576.098086,1628.49359,1048.521336,51800.93139 -Austria,AUT,1511.201454,1566.185027,1011.987128,46444.18444 -Azerbaijan,AZE,680.0220464,746.5730574,516.0173514,5842.805784 -"Bahamas, The",BHS,1132.084932,1197.989467,793.1745966,21941.8693 -Bahrain,BHR,1103.780434,1170.17358,776.414905,20545.96702 -Bangladesh,BGD,310.4029399,360.625262,266.308433,762.8037395 -Barbados,BRB,997.8679814,1065.620182,713.0866498,15812.27978 -Belarus,BLR,678.9469233,745.4778393,515.3291481,5818.854859 -Belgium,BEL,1484.68729,1540.673085,996.9904855,44358.26064 -Belize,BLZ,616.3835677,681.5222187,474.9767133,4527.336639 -Benin,BEN,298.6383882,347.9260805,257.7695017,690.0022811 -Bermuda,BMU,1934.767604,1969.723079,1246.474681,88207.32756 -Bhutan,BTN,467.7154928,527.5476903,376.3289318,2211.340513 -Bolivia,BOL,444.243464,502.9384002,360.3356987,1934.666067 -Bosnia and Herzegovina,BIH,608.6103253,673.544147,469.9194277,4380.604285 -Botswana,BWA,728.2528456,795.5798592,546.7199689,6980.361812 -Brazil,BRA,867.0295965,935.3378024,633.3712371,10978.26024 -Brunei Darussalam,BRN,1291.355959,1353.612025,886.3121928,30880.34486 -Bulgaria,BGR,711.9044621,778.995481,536.3496982,6580.813875 -Burkina Faso,BFA,281.6373864,329.510134,245.3358608,592.6074699 -Burundi,BDI,192.1160722,231.0636218,177.6806883,219.5297995 -Cabo Verde,CPV,552.8374016,616.079408,433.3271136,3413.26337 -Cambodia,KHM,313.4844445,363.945784,268.5366067,782.6188886 -Cameroon,CMR,363.0163506,417.0123338,303.9067621,1145.368992 -Canada,CAN,1523.914831,1578.406357,1019.163284,47465.34593 -Cayman Islands,CYM,0,0,0, -Central African Republic,CAF,254.718351,300.1839723,225.4036291,456.5634087 -Chad,TCD,332.1348161,383.993383,281.9505512,909.2999069 -Channel Islands,CHA,0,0,0, -Chile,CHL,916.5691459,984.8231166,663.7615377,12681.7652 -China,CHN,611.4222514,676.4310131,471.7500326,4433.340886 -Colombia,COL,694.8690263,761.6848526,525.5038566,6179.770329 -Comoros,COM,309.4612565,359.6100632,265.6268313,756.8106118 -"Congo, Dem. Rep.",COD,229.0934606,272.0590788,206.1207618,346.7042747 -"Congo, Rep.",COG,520.6060175,582.6815345,411.9187266,2920.406708 -Costa Rica,CRI,759.0653322,826.7646519,566.16709,7773.185487 -Cote d'Ivoire,CIV,382.4394043,437.6749266,317.5654555,1311.326565 -Croatia,HRV,938.9350803,1007.100749,677.3971539,13500.85443 -Cuba,CUB,673.6603667,740.0906478,511.9426519,5701.962671 -Curacao,CUW,0,0,0, -Cyprus,CYP,1241.656317,1305.20806,857.4530452,27889.03718 -Czech Republic,CZE,1087.405517,1154.0579,766.6883148,19764.01554 -Denmark,DNK,1642.382404,1691.943646,1085.594448,57647.92502 -Djibouti,DJI,387.0973395,442.6187238,320.824687,1353.193028 -Dominica,DMA,726.0971561,793.3946024,545.3546531,6926.847597 -Dominican Republic,DOM,654.7359791,720.7808145,499.7855535,5295.39969 -Ecuador,ECU,622.0766024,687.360658,478.6742762,4636.693098 -"Egypt, Arab Rep.",EGY,512.4796597,574.2378458,406.4887842,2803.532963 -El Salvador,SLV,554.7780738,618.0857491,434.6097835,3444.456148 -Equatorial Guinea,GNQ,1017.629948,1085.186967,724.9797255,16638.13107 -Eritrea,ERI,234.5981433,278.1191478,210.2903648,368.7477582 -Estonia,EST,968.4306262,1036.421489,695.3020278,14629.64939 -Ethiopia,ETH,228.3242145,271.2113894,205.5368436,343.6901516 -Faeroe Islands,FRO,0,0,0, -Fiji,FJI,567.2667272,630.9849618,442.8473691,3649.382362 -Finland,FIN,1508.166341,1563.266288,1010.272543,46202.41516 -France,FRA,1436.35291,1494.080603,969.5434816,40706.07833 -French Polynesia,PYF,0,0,0, -Gabon,GAB,815.4430557,883.5900983,601.434557,9362.113583 -"Gambia, The",GMB,276.7630811,324.2155444,241.7496257,566.3481084 -Georgia,GEO,498.8281616,560.0314127,397.3364967,2613.756925 -Germany,DEU,1450.075218,1507.319721,977.3502816,41723.3659 -Ghana,GHA,384.0924639,439.4299309,318.7228352,1326.092033 -Greece,GRC,1223.830116,1287.812776,847.0581133,26861.4598 -Greenland,GRL,0,0,0, -Grenada,GRD,743.4820588,811.0047431,556.3475655,7365.666529 -Guam,GUM,0,0,0, -Guatemala,GTM,517.9847047,579.9589069,410.1686539,2882.386026 -Guinea,GIN,250.114583,295.1467169,221.9625409,435.448888 -Guinea-Bissau,GNB,270.592359,317.5030796,237.1953335,534.1475781 -Guyana,GUY,517.4003498,579.3518311,409.7783311,2873.952008 -Haiti,HTI,295.1353889,344.1378689,255.2168608,669.1869294 -Honduras,HND,456.6712768,515.979746,368.8197349,2078.32576 -"Hong Kong SAR, China",HKG,1317.816811,1379.327906,901.6060265,32549.99823 -Hungary,HUN,924.2232407,992.4513611,668.4337339,12958.53036 -Iceland,ISL,1449.7087,1506.966227,977.1419154,41695.99365 -India,IND,394.0367851,449.9761073,325.6689774,1417.073614 -Indonesia,IDN,522.4035424,584.5479623,413.1180146,2946.656061 -"Iran, Islamic Rep.",IRN,672.4280463,738.8344312,511.1526473,5674.923927 -Iraq,IRQ,613.5608975,678.626014,473.14144,4473.71044 -Ireland,IRL,1529.285536,1583.566984,1022.191997,47900.83929 -Isle of Man,IMN,0,0,0, -Israel,ISR,1286.031985,1348.433368,883.2291431,30550.9204 -Italy,ITA,1368.137169,1428.129461,930.5586385,35875.72655 -Jamaica,JAM,636.3032182,701.9338614,487.8912838,4917.023202 -Japan,JPN,1468.555098,1525.134621,987.8454877,43117.82967 -Jordan,JOR,608.0810369,673.0006451,469.5747053,4370.721045 -Kazakhstan,KAZ,805.5689623,873.6586347,595.286063,9070.649972 -Kenya,KEN,341.5552543,394.0884321,288.6809109,977.7780694 -Kiribati,KIR,406.770906,463.452974,334.5239165,1539.047436 -"Korea, Dem. Rep.",PRK,432.0672802,490.1355459,351.9873315,1800 -"Korea, Rep.",KOR,1136.233273,1202.061951,795.6253707,22151.20912 -Kosovo,KOS,544.640388,607.5993904,427.9015587,3283.429596 -Kuwait,KWT,1407.040382,1465.76952,952.8278994,38584.4796 -Kyrgyz Republic,KGZ,327.9761899,379.5304071,278.9699811,880.0377751 -Lao PDR,LAO,360.2505816,414.063661,301.9526333,1122.852316 -Latvia,LVA,881.092001,949.4050662,642.0248841,11446.50818 -Lebanon,LBN,794.6826286,862.6988576,588.4935637,8755.849968 -Lesotho,LSO,355.2721427,408.7518639,298.4292267,1083.012065 -Liberia,LBR,223.8832668,266.3135253,202.1597549,326.6042804 -Libya,LBY,907.9771115,976.2546195,658.5095224,12375.44953 -Liechtenstein,LIE,0,0,0, -Lithuania,LTU,892.9915407,961.2960566,649.3306751,11852.1696 -Luxembourg,LUX,2052.734797,2080.914052,1310.278866,102856.9717 -"Macao SAR, China",MAC,1590.582595,1642.374927,1056.64309,53045.87903 -"Macedonia, FYR",MKD,611.8979047,676.919248,472.0595594,4442.299972 -Madagascar,MDG,245.3277238,289.9020277,218.3740678,414.1427872 -Malawi,MWI,232.3339239,275.6277399,208.5771733,359.5795268 -Malaysia,MYS,794.6264382,862.6422601,588.4584662,8754.24282 -Maldives,MDV,710.7223976,777.7952946,535.5984431,6552.484491 -Mali,MLI,295.8996139,344.9645921,255.7741553,673.6946614 -Malta,MLT,1085.946695,1152.621327,765.8206764,19695.25572 -Marshall Islands,MHL,534.4631835,597.057974,421.1474927,3126.516365 -Mauritania,MRT,341.4708011,393.9980211,288.6207041,977.1505551 -Mauritius,MUS,752.0055697,819.6277895,561.7224544,7586.893454 -Mexico,MEX,800.4125209,868.4687473,592.070518,8920.689016 -"Micronesia, Fed. Sts.",FSM,514.928846,576.7836822,408.1267129,2838.448547 -Moldova,MDA,416.0184836,473.2208128,340.9271882,1631.535832 -Monaco,MCO,2344.468082,2353.968073,1465.68601,145229.8379 -Mongolia,MNG,473.7078907,533.8159787,380.3916466,2285.645378 -Montenegro,MNE,714.2011167,781.326934,537.8087674,6636.070538 -Morocco,MAR,513.8288217,575.640357,407.391207,2822.733739 -Mozambique,MOZ,247.5910579,292.3827458,220.0721313,424.134902 -Myanmar,MMR,377.7509832,432.6943819,314.2786109,1270 -Namibia,NAM,649.0906145,715.0127142,496.1483559,5177.681179 -Nepal,NPL,282.2156901,330.1378607,245.7606959,595.7716261 -Netherlands,NLD,1558.804244,1611.907838,1038.809007,50338.25483 -New Caledonia,NCL,0,0,0, -New Zealand,NZL,1322.427218,1383.804681,904.265806,32846.45443 -Nicaragua,NIC,406.3781041,463.0377209,334.2514286,1535.192167 -Niger,NER,232.3890957,275.6884683,208.6189492,359.801242 -Nigeria,NGA,475.7141306,535.913304,381.7500316,2310.860518 -Northern Mariana Islands,MNP,0,0,0, -Norway,NOR,1916.796979,1952.742448,1236.702354,86096.13602 -Oman,OMN,1111.53211,1177.796506,781.0114561,20922.65677 -Pakistan,PAK,347.5813879,400.5355391,292.970969,1023.195756 -Palau,PLW,825.0494476,893.243978,607.4051799,9651.133366 -Panama,PAN,761.3438091,829.0669876,567.6001738,7833.903551 -Papua New Guinea,PNG,390.2667108,445.9801458,323.0388349,1382.143749 -Paraguay,PRY,532.7678328,595.3005511,420.0204319,3100.835119 -Peru,PER,644.1248989,709.9360463,492.9449479,5075.47667 -Philippines,PHL,461.5050106,521.0451568,372.1097517,2135.918407 -Poland,POL,911.0387691,979.3085581,660.3818969,12484.07315 -Portugal,PRT,1143.847869,1209.534515,800.1203128,22538.65408 -Puerto Rico,PRI,1216.361923,1280.519692,842.6961812,26437.99218 -Qatar,QAT,1784.525908,1827.396678,1164.321909,71510.15575 -Romania,ROU,772.636806,840.4709292,574.6932186,8139.146673 -Russian Federation,RUS,858.7993592,927.0970961,628.2963785,10709.76936 -Rwanda,RWA,268.9663648,315.7325058,235.9925769,525.8549278 -Samoa,WSM,555.5411892,618.8745482,435.1139652,3456.76966 -San Marino,SMR,0,0,0, -Sao Tome and Principe,STP,360.8836083,414.7386942,302.4000991,1127.981667 -Saudi Arabia,SAU,1078.070945,1144.863283,761.1333947,19326.58255 -Senegal,SEN,344.3388056,397.0674482,290.6640058,998.5995764 -Serbia,SCG,659.6547978,725.8036465,502.9506504,5399.29762 -Seychelles,SYC,862.8920742,931.1957262,630.8209406,10842.77306 -Sierra Leone,SLE,252.9154757,298.2121289,224.0572387,448.2215321 -Singapore,SGP,1512.773171,1567.696315,1012.874806,46569.68843 -Sint Maarten (Dutch part),SXM,0,0,0, -Slovak Republic,SVK,1014.601583,1082.190305,723.1595686,16509.89667 -Slovenia,SVN,1160.829551,1226.186556,810.1278932,23417.64466 -Solomon Islands,SLB,380.5634073,435.6825729,316.2510383,1294.692732 -Somalia,SOM,212.14785,253.3365088,193.1844317,284 -South Africa,ZAF,736.0334895,803.4633501,551.6426293,7175.624804 -South Sudan,SSD,411.1219459,468.0507742,337.5395011,1582.150503 -Spain,ESP,1289.027494,1351.347305,884.9640521,30736.00228 -Sri Lanka,LKA,482.7017419,543.2131961,386.4742332,2400.015575 -St. Kitts and Nevis,KNA,931.5511801,999.7502804,672.9011663,13226.95231 -St. Lucia,LCA,729.6105529,796.9559492,547.5795542,7014.196449 -St. Martin (French part),MAF,0,0,0, -St. Vincent and the Grenadines,VCT,697.1130351,763.9668472,526.934895,6231.713226 -Sudan,SDN,396.4297508,452.5110168,327.3363534,1439.523185 -Suriname,SUR,779.2555534,847.1491,578.8428506,8321.392197 -Swaziland,SWZ,543.2422879,606.1521047,426.9748931,3261.593263 -Sweden,SWE,1579.319664,1631.581807,1050.328746,52076.25591 -Switzerland,CHE,1810.809955,1852.35646,1178.769909,74276.71842 -Syrian Arab Republic,SYR,645.3219567,711.1601083,493.7175284,5100 -Tajikistan,TJK,306.7523615,356.6884442,263.6642858,739.7321918 -Tanzania,TZA,268.7374388,315.4831622,235.8231478,524.6937952 -Thailand,THA,630.5612984,696.0549175,484.1751854,4802.662758 -Timor-Leste,TLS,327.372186,378.8818605,278.536589,875.8365693 -Togo,TGO,264.4345572,310.7936467,232.6343396,503.161824 -Tonga,TON,561.0692414,624.5863264,438.7630607,3546.77782 -Trinidad and Tobago,TTO,993.4224002,1061.214673,710.4061679,15630.05045 -Tunisia,TUN,599.4428035,664.1255927,463.942002,4211.356086 -Turkey,TUR,840.7678195,909.0226081,617.1511737,10135.74889 -Turkmenistan,TKM,609.258149,674.2093209,470.3412876,4392.719583 -Turks and Caicos Islands,TCA,0,0,0, -Tuvalu,TUV,541.7571852,604.6144612,425.9901528,3238.496111 -Uganda,UGA,257.9339136,303.6984072,227.8013233,471.6772799 -Ukraine,UKR,524.2653458,586.480644,414.3595076,2973.996481 -United Arab Emirates,ARE,1338.39364,1399.29964,913.4657812,33885.92544 -United Kingdom,GBR,1403.929998,1462.762918,951.0510097,38363.44144 -United States,USA,1535.128339,1589.179758,1025.485052,48377.39385 -Uruguay,URY,883.5808782,951.8931086,643.5542154,11530.6375 -Uzbekistan,UZB,389.7155571,445.3957364,322.6539974,1377.08214 -Vanuatu,VUT,523.7050483,585.8990684,413.9859612,2965.75223 -"Venezuela, RB",VEN,940.4940871,1008.652162,678.3457096,13559.1268 -Vietnam,VNM,384.9268446,440.3155609,319.3067255,1333.583526 -Virgin Islands (U.S.),VIR,0,0,0, -West Bank and Gaza,WBK,477.9151691,538.2135379,383.2392798,2338.719877 -"Yemen, Rep.",YEM,391.6104795,447.4047457,323.9767516,1394.532356 -Zambia,ZMB,406.1834985,462.8319817,334.1164149,1533.284355 -Zimbabwe,ZWE,304.0875047,353.8125042,261.7309963,723.1646486 -Arab World,,688.4632967,755.1677558,521.4148354,6032.961957 -Caribbean small states,,790.1940967,858.176897,585.6887235,8628.040548 -Central Europe and the Baltics,,910.1484031,978.4205134,659.8374901,12452.42393 -East Asia & Pacific (all income levels),,747.1326956,814.69888,558.6508158,7459.925785 -East Asia & Pacific (developing only),,581.1203983,645.2701263,451.952199,3885.285375 -Euro area,,1396.099176,1455.191248,946.5747105,37810.39975 -Europe & Central Asia (all income levels),,1160.579708,1225.941692,809.9808238,23404.56246 -Europe & Central Asia (developing only),,695.6676619,762.497068,526.0132414,6198.226006 -European Union,,1333.40006,1394.454954,910.5902978,33558.68486 -Fragile and conflict affected situations,,385.0336564,440.4289233,319.3814569,1334.544411 -Heavily indebted poor countries (HIPC),,304.396205,354.1457495,261.9550863,725.0720456 -High income,,1370.68967,1430.60143,932.0227703,36049.74575 -High income: nonOECD,,1011.16617,1078.790074,721.0937306,16365.16378 -High income: OECD,,1436.538508,1494.259726,969.6491483,40719.73453 -Latin America & Caribbean (all income levels),,800.4477823,868.5042456,592.092518,8921.709283 -Latin America & Caribbean (developing only),,789.8817706,857.8621759,585.4934613,8619.190138 -Least developed countries: UN classification,,306.9202877,356.8696113,263.786024,740.783932 -Low & middle income,,550.2755514,613.4300903,431.6328016,3372.353103 -Low income,,278.0739669,325.6401173,242.7150655,573.3383774 -Lower middle income,,428.2373211,486.1031184,349.3538185,1758.870697 -Middle East & North Africa (all income levels),,731.6080402,798.9801455,548.8437391,7064.157652 -Middle East & North Africa (developing only),,587.8962986,652.2480899,456.3930076,4003.990437 -Middle income,,578.1200708,642.1784542,449.9832508,3833.423532 -North America,,1534.116169,1588.207548,1024.914724,48294.6308 -Not classified,,0,0,0, -OECD members,,1365.472771,1425.548772,929.029866,35694.63064 -Other small states,,603.3144103,668.104474,466.4681079,4282.33261 -Pacific island small states,,519.2084856,581.2301108,410.9858615,2900.098166 -Small states,,651.8023465,717.7838518,497.896087,5234.023815 -South Asia,,380.9688613,436.1132346,316.5352054,1298.2767 -Sub-Saharan Africa (all income levels),,404.7294533,461.2945231,333.1073044,1519.075782 -Sub-Saharan Africa (developing only),,403.459255,459.9511318,332.2253196,1506.730202 -Upper middle income,,686.6152167,753.2867342,520.2340306,5991.009883 -World,,819.1951012,887.361663,603.7678544,9474.35556 diff --git a/Data/max_potential_damages/damage_values_fema_hazus-inventory-technical-manual-4.2.3.xlsx b/Data/max_potential_damages/damage_values_fema_hazus-inventory-technical-manual-4.2.3.xlsx deleted file mode 100644 index 6931070..0000000 Binary files a/Data/max_potential_damages/damage_values_fema_hazus-inventory-technical-manual-4.2.3.xlsx and /dev/null differ diff --git a/Data/sea_level_projections/slr.csv b/Data/sea_level_projections/slr.csv deleted file mode 100644 index 1a0d95e..0000000 --- a/Data/sea_level_projections/slr.csv +++ /dev/null @@ -1,15 +0,0 @@ -year,units,ssp119,ssp126,ssp245,ssp370,ssp585 -2020,meters,0.049,0.049,0.049,0.049,0.05 -2030,meters,0.092,0.092,0.093,0.094,0.098 -2040,meters,0.128,0.136,0.142,0.145,0.157 -2050,meters,0.176,0.189,0.204,0.215,0.232 -2060,meters,0.21,0.232,0.262,0.282,0.31 -2070,meters,0.26,0.29,0.33,0.366,0.404 -2080,meters,0.301,0.338,0.403,0.458,0.509 -2090,meters,0.348,0.386,0.476,0.561,0.633 -2100,meters,0.384,0.436,0.556,0.679,0.766 -2110,meters,0.428,0.497,0.628,0.758,0.856 -2120,meters,0.466,0.545,0.702,0.868,0.98 -2130,meters,0.502,0.591,0.775,0.978,1.1 -2140,meters,0.536,0.637,0.848,1.086,1.214 -2150,meters,0.569,0.681,0.919,1.19,1.322 diff --git a/Data/sea_level_projections/slr_ippc.csv b/Data/sea_level_projections/slr_ippc.csv deleted file mode 100644 index 1a0d95e..0000000 --- a/Data/sea_level_projections/slr_ippc.csv +++ /dev/null @@ -1,15 +0,0 @@ -year,units,ssp119,ssp126,ssp245,ssp370,ssp585 -2020,meters,0.049,0.049,0.049,0.049,0.05 -2030,meters,0.092,0.092,0.093,0.094,0.098 -2040,meters,0.128,0.136,0.142,0.145,0.157 -2050,meters,0.176,0.189,0.204,0.215,0.232 -2060,meters,0.21,0.232,0.262,0.282,0.31 -2070,meters,0.26,0.29,0.33,0.366,0.404 -2080,meters,0.301,0.338,0.403,0.458,0.509 -2090,meters,0.348,0.386,0.476,0.561,0.633 -2100,meters,0.384,0.436,0.556,0.679,0.766 -2110,meters,0.428,0.497,0.628,0.758,0.856 -2120,meters,0.466,0.545,0.702,0.868,0.98 -2130,meters,0.502,0.591,0.775,0.978,1.1 -2140,meters,0.536,0.637,0.848,1.086,1.214 -2150,meters,0.569,0.681,0.919,1.19,1.322 diff --git a/FloodAdapt_database/Humber/FloodAdapt_Humber_catalog.yml b/FloodAdapt_database/Humber/FloodAdapt_Humber_catalog.yml deleted file mode 100644 index 2c232fd..0000000 --- a/FloodAdapt_database/Humber/FloodAdapt_Humber_catalog.yml +++ /dev/null @@ -1,33 +0,0 @@ - -meta: - root: C:\Repositories\DT-flood\Data\ - -jrc_vulnerability_curves: - path: damage_functions/flooding/JRC_damage_functions.csv - data_type: DataFrame - driver: csv - meta: - category: vulnerability - description: JRC depth-damage functions for flooding, processed into a handy format for HydroMT-FIAT. - source_url: https://publications.jrc.ec.europa.eu/repository/handle/JRC105688 - paper_ref: Huizinga, J., De Moel, H. and Szewczyk, W., Global flood depth-damage functions - Methodology and the database with guidelines, EUR 28552 EN, Publications Office of the European Union, Luxembourg, 2017, ISBN 978-92-79-67781-6, doi:10.2760/16510, JRC105688. - paper_doi: https://dx.doi.org/10.2760/16510 - -jrc_vulnerability_curves_linking: - path: damage_functions/flooding/JRC_damage_functions_linking.csv - data_type: DataFrame - driver: csv - meta: - category: vulnerability - description: Default linking table for the JRC damage functions (e.g., the residential damage function links to residential buildings). - -jrc_damage_values: - path: max_potential_damages/JRC_base_damage_values.csv - data_type: DataFrame - driver: csv - meta: - category: vulnerability - description: Base damage values from the JRC publicated Excel from the tab "MaxDamage-Data", processed into a handy format for HydroMT-FIAT. - source_url: https://publications.jrc.ec.europa.eu/repository/handle/JRC105688 - paper_ref: Huizinga, J., De Moel, H. and Szewczyk, W., Global flood depth-damage functions - Methodology and the database with guidelines, EUR 28552 EN, Publications Office of the European Union, Luxembourg, 2017, ISBN 978-92-79-67781-6, doi:10.2760/16510, JRC105688. - paper_doi: https://dx.doi.org/10.2760/16510 \ No newline at end of file diff --git a/FloodAdapt_database/Humber/HumberDelta_ObsLine.geojson b/FloodAdapt_database/Humber/HumberDelta_ObsLine.geojson deleted file mode 100644 index 23fe621..0000000 --- a/FloodAdapt_database/Humber/HumberDelta_ObsLine.geojson +++ /dev/null @@ -1 +0,0 @@ -{"type":"FeatureCollection","features":[{"type":"Feature","properties":{},"geometry":{"coordinates":[[-0.18124401412731572,53.62915061050927],[-0.16144740486075193,53.63753518694401],[-0.1421221434334825,53.643123978892646],[-0.12373957768591026,53.646476898625394]],"type":"LineString"}},{"type":"Feature","properties":{},"geometry":{"coordinates":[[-0.6102965232538509,53.71435405515132],[-0.5976407817663585,53.72096219214626],[-0.5879628618046127,53.72404563412374],[-0.5808905356789751,53.72646817993146]],"type":"LineString"}}]} \ No newline at end of file diff --git a/FloodAdapt_database/Humber/HumberDelta_ObsPoints.geojson b/FloodAdapt_database/Humber/HumberDelta_ObsPoints.geojson deleted file mode 100644 index 35ac727..0000000 --- a/FloodAdapt_database/Humber/HumberDelta_ObsPoints.geojson +++ /dev/null @@ -1 +0,0 @@ -{"type":"FeatureCollection","features":[{"type":"Feature","properties":{},"geometry":{"coordinates":[0.04181198874374559,53.639893210250364],"type":"Point"}},{"type":"Feature","properties":{},"geometry":{"coordinates":[-0.06705856119944542,53.584944521152494],"type":"Point"}},{"type":"Feature","properties":{},"geometry":{"coordinates":[0.1480727888313993,53.481393556500734],"type":"Point"}},{"type":"Feature","properties":{},"geometry":{"coordinates":[-0.3121165327600295,53.74300363498068],"type":"Point"}},{"type":"Feature","properties":{},"geometry":{"coordinates":[-0.7098554045731191,53.69519412727985],"type":"Point"}}]} \ No newline at end of file diff --git a/FloodAdapt_database/Humber/HumberDelta_large.geojson b/FloodAdapt_database/Humber/HumberDelta_large.geojson deleted file mode 100644 index 847bdb9..0000000 --- a/FloodAdapt_database/Humber/HumberDelta_large.geojson +++ /dev/null @@ -1 +0,0 @@ -{"type":"FeatureCollection","features":[{"type":"Feature","properties":{},"geometry":{"coordinates":[[[-1.056816880256747,53.822483934713716],[-1.056816880256747,53.45678163473664],[0.17432842378539704,53.45678163473664],[0.17432842378539704,53.822483934713716],[-1.056816880256747,53.822483934713716]]],"type":"Polygon"}}]} \ No newline at end of file diff --git a/FloodAdapt_database/Humber/static/templates/fiat/hydromt.log b/FloodAdapt_database/Humber/static/templates/fiat/hydromt.log deleted file mode 100644 index 21072ae..0000000 --- a/FloodAdapt_database/Humber/static/templates/fiat/hydromt.log +++ /dev/null @@ -1,38 +0,0 @@ -2023-10-02 16:38:28,634 - FIAT_logger - log - DEBUG - Writing log messages to new file C:\Repositories\DT-flood\FloodAdapt_database\Humber\static\templates\fiat\hydromt.log. -2023-10-02 16:38:28,636 - FIAT_logger - model_api - INFO - Initializing fiat model from hydromt_fiat (v0.2.1.dev0). -2023-10-02 16:38:35,358 - FIAT_logger - model_api - INFO - setup_basemaps.region: {'geom': geometry -0 POLYGON ((-1.05682 53.82248, -1.05682 53.45678...} -2023-10-02 16:38:35,362 - FIAT_logger - basin_mask - DEBUG - Parsed region (kind=geom): {'geom': 'GeoDataFrame [-1.05681688 53.45678163 0.17432842 53.82248393] (crs = epsg:4326)'} -2023-10-02 16:38:35,365 - FIAT_logger - model_api - INFO - setup_output.output_dir: output -2023-10-02 16:38:35,367 - FIAT_logger - model_api - INFO - setup_output.output_csv_name: output.csv -2023-10-02 16:38:35,368 - FIAT_logger - model_api - INFO - setup_output.output_vector_name: spatial.gpkg -2023-10-02 16:38:35,370 - FIAT_logger - model_api - ERROR - Default config file not found at c:\Repositories\DT-flood\Notebooks\data\fiat\settings.toml -2023-10-02 16:38:35,371 - FIAT_logger - model_api - INFO - setup_vulnerability.vulnerability_fn: jrc_vulnerability_curves -2023-10-02 16:38:35,373 - FIAT_logger - model_api - INFO - setup_vulnerability.vulnerability_identifiers_and_linking_fn: jrc_vulnerability_curves_linking -2023-10-02 16:38:35,374 - FIAT_logger - model_api - INFO - setup_vulnerability.unit: meters -2023-10-02 16:38:35,375 - FIAT_logger - model_api - INFO - setup_vulnerability.functions_mean: default -2023-10-02 16:38:35,377 - FIAT_logger - model_api - INFO - setup_vulnerability.functions_max: None -2023-10-02 16:38:35,377 - FIAT_logger - model_api - INFO - setup_vulnerability.step_size: None -2023-10-02 16:38:35,378 - FIAT_logger - model_api - INFO - setup_vulnerability.continent: Europe -2023-10-02 16:38:35,379 - FIAT_logger - data_catalog - INFO - DataCatalog: Getting jrc_vulnerability_curves DataFrame csv data from C:\Repositories\DT-flood\Data\damage_functions\flooding\JRC_damage_functions.csv -2023-10-02 16:38:35,385 - FIAT_logger - dataframe - INFO - DataFrame: Read csv data. -2023-10-02 16:38:35,412 - FIAT_logger - data_catalog - INFO - DataCatalog: Getting jrc_vulnerability_curves_linking DataFrame csv data from C:\Repositories\DT-flood\Data\damage_functions\flooding\JRC_damage_functions_linking.csv -2023-10-02 16:38:35,414 - FIAT_logger - dataframe - INFO - DataFrame: Read csv data. -2023-10-02 16:38:35,431 - FIAT_logger - model_api - INFO - setup_exposure_vector.asset_locations: OSM -2023-10-02 16:38:35,432 - FIAT_logger - model_api - INFO - setup_exposure_vector.occupancy_type: OSM -2023-10-02 16:38:35,433 - FIAT_logger - model_api - INFO - setup_exposure_vector.max_potential_damage: jrc_damage_values -2023-10-02 16:38:35,434 - FIAT_logger - model_api - INFO - setup_exposure_vector.ground_floor_height: 0 -2023-10-02 16:38:35,435 - FIAT_logger - model_api - INFO - setup_exposure_vector.unit: meters -2023-10-02 16:38:35,436 - FIAT_logger - model_api - INFO - setup_exposure_vector.occupancy_type_field: None -2023-10-02 16:38:35,437 - FIAT_logger - model_api - INFO - setup_exposure_vector.extraction_method: centroid -2023-10-02 16:38:35,438 - FIAT_logger - model_api - INFO - setup_exposure_vector.damage_types: ['structure', 'content'] -2023-10-02 16:38:35,439 - FIAT_logger - model_api - INFO - setup_exposure_vector.country: United Kingdom -2023-10-02 16:38:35,440 - FIAT_logger - exposure_vector - INFO - Setting up exposure data from multiple sources... -2023-10-02 16:38:35,441 - FIAT_logger - exposure_vector - INFO - Setting up asset locations... -2023-10-02 16:39:06,539 - FIAT_logger - exposure_vector - INFO - Setting exposure geometries... -2023-10-02 16:39:06,541 - FIAT_logger - exposure_vector - INFO - Setting up occupancy type from OSM... -2023-10-02 16:39:14,369 - FIAT_logger - exposure_vector - INFO - The following unique landuse types are found in the OSM data: ['residential', 'industrial', 'grass', 'forest', 'military', 'recreation_ground', 'allotments', 'brownfield', 'cemetery', 'commercial', 'retail', 'meadow', 'farmyard', 'farmland', 'landfill', 'railway', 'quarry', 'construction', 'religious', 'conservation', 'churchyard', 'garages', 'depot', 'plant_nursery', 'village_green', 'orchard', 'greenhouse', 'field', 'highway', 'stream', 'vineyard', 'green', 'flowerbed', 'greenhouse_horticulture', 'street', 'greenfield', 'parking', 'animal_keeping'] -2023-10-02 16:39:15,922 - FIAT_logger - exposure_vector - WARNING - 7581 objects do not have a Primary Object Type and will be removed from the exposure data. -2023-10-02 16:39:15,956 - FIAT_logger - exposure_vector - WARNING - 5495 objects were not overlapping with the land use data and will be removed from the exposure data. -2023-10-02 16:39:16,015 - FIAT_logger - data_catalog - INFO - DataCatalog: Getting jrc_damage_values DataFrame csv data from C:\Repositories\DT-flood\Data\max_potential_damages\JRC_base_damage_values.csv -2023-10-02 16:39:16,018 - FIAT_logger - dataframe - INFO - DataFrame: Read csv data. diff --git a/FloodAdapt_database/Humber/static/templates/overland/hydromt.log b/FloodAdapt_database/Humber/static/templates/overland/hydromt.log deleted file mode 100644 index 366c55f..0000000 --- a/FloodAdapt_database/Humber/static/templates/overland/hydromt.log +++ /dev/null @@ -1,2 +0,0 @@ -2023-09-28 12:12:56,448 - hydromt_sfincs.sfincs - model_api - WARNING - Replacing geom: region -2023-09-28 12:12:56,491 - hydromt_sfincs.sfincs - model_api - WARNING - Replacing geom: region diff --git a/FloodAdapt_database/Humber/wflow_build.ini b/FloodAdapt_database/Humber/wflow_build.ini deleted file mode 100644 index ac8ad39..0000000 --- a/FloodAdapt_database/Humber/wflow_build.ini +++ /dev/null @@ -1,94 +0,0 @@ -[setup_config] # options parsed to wflow ini file
.