- check that all files in
params/
have the values you want - check the preprocessing params in
preprocessing/mnefun_params.yaml
- run
preprocessing/run_coreg.py
(run once) to generate copies of the surrogate MRI scaled to each subject's headshape points / cardinal landmarks. Also generates the-trans.fif
file - run
preprocessing/run_mnefun.py
- run
preprocessing/morph_labels.py
- run
analysis/*.py
(seeanalysis/README.md
)