Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Qiime2 reference data #9

Open
bernt-matthias opened this issue Jan 26, 2024 · 0 comments
Open

Qiime2 reference data #9

bernt-matthias opened this issue Jan 26, 2024 · 0 comments
Labels
help wanted Extra attention is needed

Comments

@bernt-matthias
Copy link
Contributor

We would need some reference data listed at https://docs.qiime2.org/2023.9/data-resources/:

  • Taxonomy classifiers for use with q2-feature-classifier
  • SEPP reference databases

nice thing is that is versioned (in the URLs) and there is md5 checksums. Wondering if we need an extra method for this.

Do we already have a script do download given a list of links + hashes?

The annoying part is that we also need UNITE data: from the qiime release (latest version + release data + the larger number of Refs). If you download with the browser some contact infos are requested. There seems to be also an API, but I have not found out how to use it, yet. I wrote an email asking for help.

@wookietreiber wookietreiber added the help wanted Extra attention is needed label Feb 9, 2024
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
help wanted Extra attention is needed
Projects
None yet
Development

No branches or pull requests

2 participants