From 7adbfe6c339c02c8da7e29485e8ef8e82d31ec46 Mon Sep 17 00:00:00 2001 From: "pre-commit-ci[bot]" <66853113+pre-commit-ci[bot]@users.noreply.github.com> Date: Mon, 11 Dec 2023 18:31:08 +0000 Subject: [PATCH] [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci --- _preprocessing/prepare_input_datasets.py | 2 +- _preprocessing/subsample_luca.py | 2 +- docs/notebooks/01_merge.py | 2 +- docs/notebooks/02_qc.py | 2 +- docs/notebooks/03_seed_annotation.py | 2 +- docs/notebooks/04_integrate_scvi.py | 2 +- docs/notebooks/05_cell_type_annotation.py | 2 +- docs/notebooks/06_differential_expression.py | 2 +- docs/notebooks/09_compositional.py | 2 +- docs/notebooks/10_bulk_integration.py | 2 +- docs/notebooks/10_functional_analysis.py | 2 +- docs/notebooks/15_cell_cell_communication.py | 2 +- 12 files changed, 12 insertions(+), 12 deletions(-) diff --git a/_preprocessing/prepare_input_datasets.py b/_preprocessing/prepare_input_datasets.py index 54fd514..9f05381 100644 --- a/_preprocessing/prepare_input_datasets.py +++ b/_preprocessing/prepare_input_datasets.py @@ -5,7 +5,7 @@ # extension: .py # format_name: percent # format_version: '1.3' -# jupytext_version: 1.15.0 +# jupytext_version: 1.16.0 # kernelspec: # display_name: Python [conda env:conda-2023-atlas-protocol] # language: python diff --git a/_preprocessing/subsample_luca.py b/_preprocessing/subsample_luca.py index 2530a7b..1f3509e 100644 --- a/_preprocessing/subsample_luca.py +++ b/_preprocessing/subsample_luca.py @@ -5,7 +5,7 @@ # extension: .py # format_name: percent # format_version: '1.3' -# jupytext_version: 1.15.0 +# jupytext_version: 1.16.0 # kernelspec: # display_name: Python [conda env:.conda-pircher-sc-integrate2] # language: python diff --git a/docs/notebooks/01_merge.py b/docs/notebooks/01_merge.py index 6027503..45e5f59 100644 --- a/docs/notebooks/01_merge.py +++ b/docs/notebooks/01_merge.py @@ -5,7 +5,7 @@ # extension: .py # format_name: percent # format_version: '1.3' -# jupytext_version: 1.15.0 +# jupytext_version: 1.16.0 # --- # %% [markdown] diff --git a/docs/notebooks/02_qc.py b/docs/notebooks/02_qc.py index 67122bd..b74f811 100644 --- a/docs/notebooks/02_qc.py +++ b/docs/notebooks/02_qc.py @@ -5,7 +5,7 @@ # extension: .py # format_name: percent # format_version: '1.3' -# jupytext_version: 1.15.0 +# jupytext_version: 1.16.0 # kernelspec: # display_name: Python [conda env:conda-2023-atlas-protocol] # language: python diff --git a/docs/notebooks/03_seed_annotation.py b/docs/notebooks/03_seed_annotation.py index 7cac5a2..d493ea0 100644 --- a/docs/notebooks/03_seed_annotation.py +++ b/docs/notebooks/03_seed_annotation.py @@ -5,7 +5,7 @@ # extension: .py # format_name: percent # format_version: '1.3' -# jupytext_version: 1.15.0 +# jupytext_version: 1.16.0 # kernelspec: # display_name: Python [conda env:conda-2023-atlas-protocol] # language: python diff --git a/docs/notebooks/04_integrate_scvi.py b/docs/notebooks/04_integrate_scvi.py index a58880e..705960c 100644 --- a/docs/notebooks/04_integrate_scvi.py +++ b/docs/notebooks/04_integrate_scvi.py @@ -5,7 +5,7 @@ # extension: .py # format_name: percent # format_version: '1.3' -# jupytext_version: 1.15.0 +# jupytext_version: 1.16.0 # --- # %% [markdown] diff --git a/docs/notebooks/05_cell_type_annotation.py b/docs/notebooks/05_cell_type_annotation.py index 2e7c9b8..f7791b6 100644 --- a/docs/notebooks/05_cell_type_annotation.py +++ b/docs/notebooks/05_cell_type_annotation.py @@ -5,7 +5,7 @@ # extension: .py # format_name: percent # format_version: '1.3' -# jupytext_version: 1.15.0 +# jupytext_version: 1.16.0 # kernelspec: # display_name: Python [conda env:conda-2023-atlas-protocol] # language: python diff --git a/docs/notebooks/06_differential_expression.py b/docs/notebooks/06_differential_expression.py index 427d9ca..a2f3489 100644 --- a/docs/notebooks/06_differential_expression.py +++ b/docs/notebooks/06_differential_expression.py @@ -5,7 +5,7 @@ # extension: .py # format_name: percent # format_version: '1.3' -# jupytext_version: 1.15.0 +# jupytext_version: 1.16.0 # kernelspec: # display_name: Python [conda env:conda-2023-atlas-protocol] # language: python diff --git a/docs/notebooks/09_compositional.py b/docs/notebooks/09_compositional.py index 30935c9..47d804c 100644 --- a/docs/notebooks/09_compositional.py +++ b/docs/notebooks/09_compositional.py @@ -5,7 +5,7 @@ # extension: .py # format_name: percent # format_version: '1.3' -# jupytext_version: 1.15.0 +# jupytext_version: 1.16.0 # kernelspec: # display_name: Python [conda env:conda-2023-atlas-protocol] # language: python diff --git a/docs/notebooks/10_bulk_integration.py b/docs/notebooks/10_bulk_integration.py index f70a4f8..286a88e 100644 --- a/docs/notebooks/10_bulk_integration.py +++ b/docs/notebooks/10_bulk_integration.py @@ -5,7 +5,7 @@ # extension: .py # format_name: percent # format_version: '1.3' -# jupytext_version: 1.15.0 +# jupytext_version: 1.16.0 # kernelspec: # display_name: Python [conda env:conda-2023-atlas-protocol] # language: python diff --git a/docs/notebooks/10_functional_analysis.py b/docs/notebooks/10_functional_analysis.py index d0dd710..d6659de 100644 --- a/docs/notebooks/10_functional_analysis.py +++ b/docs/notebooks/10_functional_analysis.py @@ -5,7 +5,7 @@ # extension: .py # format_name: percent # format_version: '1.3' -# jupytext_version: 1.15.0 +# jupytext_version: 1.16.0 # kernelspec: # display_name: 'SSH apollo-15 apollo-15: mmCD45' # language: '' diff --git a/docs/notebooks/15_cell_cell_communication.py b/docs/notebooks/15_cell_cell_communication.py index 47b88f4..ffda18b 100644 --- a/docs/notebooks/15_cell_cell_communication.py +++ b/docs/notebooks/15_cell_cell_communication.py @@ -5,7 +5,7 @@ # extension: .py # format_name: percent # format_version: '1.3' -# jupytext_version: 1.15.0 +# jupytext_version: 1.16.0 # kernelspec: # display_name: atlas_protocol # language: python