_pkgdown.yml

template:
  params:
    toc: true
    toc_float: true
    toc_depth: 3

navbar:
  left:
    - text: "Reference"
      href: reference/index.html
    - text: "Vignettes"
      menu:
        - text: "What's New in v1.1.0"
          href: articles/News.html
        - text: "-----------------"
        - text: "Enhanced Visualization"
          href: articles/Visualization.html
        - text: "Geneset Enrichment Analysis (GSEA) "
          href: articles/GSEA.html
        - text: "Trajectory and Pseudotime Analysis "
          href: articles/Trajectory.html
        - text: "SCENIC for Gene Regulatory Networks Analysis "
          href: articles/SCENIC.html
        - text: "Utility Tools and Functions"
          href: articles/Utilities.html
    - text: "scRNA-seq Course"
      menu:
        - text: "1. Introduction to R"
          href: articles/single-cell-course/1.basic-R.html
        - text: "2. Basic Single-Cell Analysis Workflow"
          href: articles/single-cell-course/2.Seurat.html
        - text: "3. Advanced Visualization Techniques"
          href: articles/single-cell-course/3.Visualization.html
        - text: "4. Gene Set Enrichment Analysis"
          href: articles/single-cell-course/4.GSEA.html
        - text: "5. Core scRNA-seq Workflow Enhancements"
          href: articles/single-cell-course/5.Core-Enhancement.html
        - text: "6. Advanced Methods (Part 1)"
          href: articles/single-cell-course/6.Advanced.html
        - text: "7. Advanced Methods (Part 2)"
          href: articles/single-cell-course/6.Advanced-2.html
    - text: "FAQ"
      href: articles/FAQ.html