lastz step terminated with an error exit status (132)

[munegowda]

Hi @kirilenkobm and @MichaelHiller,

Thank you for providing this pipeline!

I am using make_lastz_chains version 2.0.8 in our Slurm cluster. When I run the test example ./make_chains.py target query test_data/test_reference.fa test_data/test_query.fa --pd test_out -f --chaining_memory 16 --cluster_executor slurm --cluster_queue long, the pipeline terminates at the lastz step. In the nextflow.log from the temp_lastz_run directory an exit code 132 leading to the termination is documented.

However, when I run ./make_chains.py target query test_data/test_reference.fa test_data/test_query.fa --pd test_out -f --chaining_memory 16 from an sbatch script where the cluster_executor is local, the pipeline does not terminate.

I'd appreciate your thoughts on what might be causing this issue.

[kirilenkobm]

Hi @munegowda
just to make sure - can you pls test on the last of the 1st versions? Not 2.x.x

Best,
Bogdan