From b4fae6acfcb7d38f044204aa4138a9bd96b94a30 Mon Sep 17 00:00:00 2001 From: Susanna Kiwala Date: Mon, 23 Apr 2018 09:50:07 -0500 Subject: [PATCH] Update version --- docs/conf.py | 2 +- docs/index.rst | 16 +++++----------- setup.py | 2 +- 3 files changed, 7 insertions(+), 13 deletions(-) diff --git a/docs/conf.py b/docs/conf.py index ce0c88c94..74ed8cf77 100644 --- a/docs/conf.py +++ b/docs/conf.py @@ -69,7 +69,7 @@ # The short X.Y version. version = '1.0' # The full version, including alpha/beta/rc tags. -release = '1.0.3' +release = '1.0.4' # The language for content autogenerated by Sphinx. Refer to documentation # for a list of supported languages. diff --git a/docs/index.rst b/docs/index.rst index 69d186276..18c85364f 100644 --- a/docs/index.rst +++ b/docs/index.rst @@ -38,17 +38,11 @@ New in version |release| This is a hotfix release. It fixes the following issues: -- Stop-gain mutation were previously not handled correctly. If a mutation had - a \* (stop gain) in the VEP Amino_acids field, pVACseq would throw an error. - We now ensure that those cases are handled. pVACseq will also skip stop-gain - mutations if the resulting mutant peptide sequence is not novel. -- pVACseq would previously throw an error if multiple mutations resulted - in the same consequence. This is now handled by assigning a unique - identifier to each mutation. -- We added a better warning messages if the chosen prediction algorithms and - alleles MHC classes are mutually exclusive, e.g., if only class I prediction - algorithms were chosen with only class II alleles. Previously, pVACseq would - simply finish without producing any output or errors. +- We discovered a couple more cases of mutations involving stop codons that + would result in errors. These are amino acid changes (VEP Amino_acids field) + for large indels that would span exon boundaries (multiple \* in the Amino_acids + field), or amino acid changes involving the transcript stop codon (ending in X). + These cases are now handled. Coming soon ----------- diff --git a/setup.py b/setup.py index 2ca8e0f85..a6cdad0d2 100644 --- a/setup.py +++ b/setup.py @@ -45,7 +45,7 @@ setup( name="pvactools", - version="1.0.3", + version="1.0.4", packages=["tools", "tools.pvacfuse", "tools.pvacvector", "tools.pvacseq", "lib", "utils.pvacapi", "utils.pvacapi.controllers"], entry_points={ "console_scripts":[