From 17e1176068996726e4fcbd80613dca76d9759ce0 Mon Sep 17 00:00:00 2001 From: Susanna Kiwala Date: Wed, 31 Oct 2018 08:23:53 -0500 Subject: [PATCH] Update to version 1.1.2 --- docs/conf.py | 2 +- docs/index.rst | 8 +++++--- setup.py | 2 +- 3 files changed, 7 insertions(+), 5 deletions(-) diff --git a/docs/conf.py b/docs/conf.py index 83b76e919..fe88f986e 100644 --- a/docs/conf.py +++ b/docs/conf.py @@ -69,7 +69,7 @@ # The short X.Y version. version = '1.1' # The full version, including alpha/beta/rc tags. -release = '1.1.1' +release = '1.1.2' # The language for content autogenerated by Sphinx. Refer to documentation # for a list of supported languages. diff --git a/docs/index.rst b/docs/index.rst index 35cf240b8..ed7ae6d64 100644 --- a/docs/index.rst +++ b/docs/index.rst @@ -45,9 +45,11 @@ New in version |release| This is a hotfix release. It fixes the following issue(s): -- In version 1.1 we updated VAFs to be fractions, rather than percentages. A - bug in this code change resulted in an error when using custom VAF cutoff values instead of the - default. This has now been fixed. +- In version 1.1.0 we added a ``--pass-only`` flag to pVACseq that would + result in only variants with ``FILTER`` of ``PASS`` or ``.`` getting processed. + However, this option was not getting passed along to the pVACseq process + correctly, resulting in this option not taking effect. This hotfix release + fixes this issue and the ``--pass-only`` flag should now work as expected. New in version |version| ------------------------ diff --git a/setup.py b/setup.py index 15618c584..d2453274b 100644 --- a/setup.py +++ b/setup.py @@ -56,7 +56,7 @@ setup( name="pvactools", - version="1.1.1", + version="1.1.2", packages=[ "tools", "tools.pvacfuse",