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Output files
There should be seven new $taxa _protein_xref_alliance_genome_resources.csv datasets for human, rat, mouse, zebrafish, fruitfly, and yeast
Example output file: human _protein_xref_alliance_genome_resources.csv
id
xref_key
xref_id
xref_label
A0A087WZT3-1
protein_xref_alliance_genome_resources
HGNC:53563
Q13490-1
protein_xref_alliance_genome_resources
HGNC:590
Q5SWW7-1
protein_xref_alliance_genome_resources
HGNC:31008
The text was updated successfully, but these errors were encountered:
Related to #2136 xref datasets for new AGR data in
protein_homolog_clusters.csv
Source file = ebi/current/uniprot-proteome-$taxa.nt files
Output file =$taxa _protein_xref_alliance_genome_resources.csv
Species datasets = human, rat, mouse, zebrafish, fruitfly, and yeast
The output file should have the following headers:
Input file:
AGR xref data for is present in triples within the different taxa's
uniprot-proteome-*.nt
files e.g.Output files
There should be seven new
$taxa _protein_xref_alliance_genome_resources.csv
datasets for human, rat, mouse, zebrafish, fruitfly, and yeastExample output file:
human _protein_xref_alliance_genome_resources.csv
The text was updated successfully, but these errors were encountered: