From 05b96aeb4b277c8627ab233d359f0c1b8e4a8775 Mon Sep 17 00:00:00 2001
From: GABRAH <hb1115@york.ac.uk>
Date: Mon, 27 Sep 2021 08:56:13 +0100
Subject: [PATCH] I'm a debil who forgot to add else ifs for ligands

---
 src/privateer.cpp | 26 ++++++++++++++++++++++++++
 1 file changed, 26 insertions(+)

diff --git a/src/privateer.cpp b/src/privateer.cpp
index 9af51e691..c01a4e849 100644
--- a/src/privateer.cpp
+++ b/src/privateer.cpp
@@ -787,6 +787,11 @@ int main(int argc, char** argv)
                               ligandList[index].second.set_context ( "s-glycan" );
                               fprintf ( output, "\t(s) " );
                             }
+                            else if ( list_of_glycans[i].get_type() == "ligand" )
+                            {
+                                ligandList[index].second.set_context ( "ligand" );
+                                fprintf ( output, "\t(l) " );
+                            }
                             found_in_tree = true;
                             break;
                         }
@@ -915,6 +920,11 @@ int main(int argc, char** argv)
                                 ligandList[index].second.set_context ( "s-glycan" );
                                 std::cout << "\t(s) ";
                             }
+                            else if ( list_of_glycans[i].get_type() == "ligand" )
+                            {
+                                ligandList[index].second.set_context ( "ligand" );
+                                std::cout << "\t(l) ";
+                            }
                             found_in_tree = true;
                             break;
                         }
@@ -2000,6 +2010,10 @@ int main(int argc, char** argv)
 									{
 										ligandList[index].second.set_context ( "s-glycan" );
 									}
+                                    else if ( list_of_glycans[i].get_type() == "ligand" )
+                                    {
+                                        ligandList[index].second.set_context ( "ligand" );
+                                    }
 									found_in_tree = true;
 									break;
 								}
@@ -2124,6 +2138,10 @@ int main(int argc, char** argv)
                             {
                                 ligandList[index].second.set_context ( "s-glycan" );
                             }
+                            else if ( list_of_glycans[i].get_type() == "ligand" )
+                            {
+                                ligandList[index].second.set_context ( "ligand" );
+                            }
                             found_in_tree = true;
                             break;
                         }
@@ -2689,6 +2707,10 @@ int main(int argc, char** argv)
 									{
 										ligandList[index].second.set_context ( "s-glycan" );
 									}
+                                    else if ( list_of_glycans[i].get_type() == "ligand" )
+                                    {
+                                        ligandList[index].second.set_context ( "ligand" );
+                                    }
 									found_in_tree = true;
 									break;
 								}
@@ -2817,6 +2839,10 @@ int main(int argc, char** argv)
                             {
                                 ligandList[index].second.set_context ( "s-glycan" );
                             }
+                            else if ( list_of_glycans[i].get_type() == "ligand" )
+                            {
+                                ligandList[index].second.set_context ( "ligand" );
+                            }
                             found_in_tree = true;
                             break;
                         }