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setup.py
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setup.py
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from setuptools import setup
from setuptools import find_namespace_packages
# Load the README file.
with open(file="README.md", mode="r") as readme_handle:
long_description = readme_handle.read()
setup(
name='clumps-ptm',
author='Shankara Anand',
version="0.0.7",
author_email='[email protected]',
description='CLUMPS-PTM driver gene discovery using 3D protein structure (Getz Lab).',
long_description=long_description,
long_description_content_type="text/markdown",
url='https://github.com/getzlab/CLUMPS-PTM',
keywords='cancer, bioinformatics, genomics, proteomics, proteins, alphafold, post-translational modifications, phosphorylation, acetylation',
python_requires='>=3.6',
packages=[
'clumpsptm',
'clumpsptm.clumps',
'clumpsptm.mapping',
'clumpsptm.samplers',
'clumpsptm.vis'
],
install_requires=[
"matplotlib>=3.2.1",
"twobitreader>=3.1.7",
"statsmodels>=0.9.0",
"scipy>=1.3.0",
"pyopenssl>=19.0.0",
"prody>=1.10.10",
"lxml>=4.3.4",
"biopython>=1.73",
"tqdm>=4.32.1",
"agutil"
],
entry_points={
'console_scripts':[
'clumpsptm = clumpsptm.__main__:main',
]
},
classifiers = [
"Development Status :: 3 - Alpha",
"Programming Language :: Python :: 3",
"Intended Audience :: Science/Research",
"Topic :: Scientific/Engineering :: Bio-Informatics",
"Typing :: Typed",
"License :: OSI Approved :: MIT License",
],
)