diff --git a/src/ontology/go-edit.obo b/src/ontology/go-edit.obo
index 10fa8adea5..3dcb85f134 100644
--- a/src/ontology/go-edit.obo
+++ b/src/ontology/go-edit.obo
@@ -56644,12 +56644,13 @@ relationship: part_of GO:0005737 ! cytoplasm
[Term]
id: GO:0005962
-name: mitochondrial isocitrate dehydrogenase complex (NAD+)
+name: obsolete mitochondrial isocitrate dehydrogenase complex (NAD+)
namespace: cellular_component
-def: "Mitochondrial complex that possesses isocitrate dehydrogenase (NAD+) activity." [GOC:mah, GOC:mtg_sensu]
-comment: Note that this term represents a location and not a function; the activity possessed by this complex is mentioned in the definition for the purpose of describing and distinguishing the complex. The function of this complex is represented by the molecular function term 'isocitrate dehydrogenase (NAD+) activity ; GO:0004449'.
-intersection_of: GO:0045242 ! isocitrate dehydrogenase complex (NAD+)
-intersection_of: part_of GO:0005739 ! mitochondrion
+def: "OBSOLETE. Mitochondrial complex that possesses isocitrate dehydrogenase (NAD+) activity." [GOC:mah, GOC:mtg_sensu]
+comment: The reason for obsoletion is that this term is unnecessarily taxon-specific.
+property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/26882" xsd:anyURI
+is_obsolete: true
+replaced_by: GO:0045242
[Term]
id: GO:0005963
@@ -156407,13 +156408,14 @@ relationship: part_of GO:0031966 ! mitochondrial membrane
[Term]
id: GO:0030062
-name: mitochondrial tricarboxylic acid cycle enzyme complex
+name: obsolete mitochondrial tricarboxylic acid cycle enzyme complex
namespace: cellular_component
-def: "Any of the heteromeric enzymes, located in the mitochondrion, that act in the tricarboxylic acid (TCA) cycle." [GOC:mah, GOC:mtg_sensu]
+def: "OBSOLETE. Any of the heteromeric enzymes, located in the mitochondrion, that act in the tricarboxylic acid (TCA) cycle." [GOC:mah, GOC:mtg_sensu]
+comment: The reason for obsoletion is that this term is unnecessarily taxon-specific.
synonym: "TCA cycle enzyme complex" BROAD []
-intersection_of: GO:0045239 ! tricarboxylic acid cycle enzyme complex
-intersection_of: part_of GO:0005739 ! mitochondrion
-relationship: part_of GO:0005759 ! mitochondrial matrix
+property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/26882" xsd:anyURI
+is_obsolete: true
+replaced_by: GO:0045239
[Term]
id: GO:0030063
@@ -238020,7 +238022,7 @@ id: GO:0042709
name: succinate-CoA ligase complex
namespace: cellular_component
def: "A heterodimeric enzyme complex, usually composed of an alpha and beta chain. Functions in the TCA cycle, hydrolyzing succinyl-CoA into succinate and CoA, thereby forming ATP or GTP." [GOC:jl, PMID:10671455]
-is_a: GO:0045239 ! tricarboxylic acid cycle enzyme complex
+is_a: GO:0045239 ! tricarboxylic acid cycle heteromeric enzyme complex
intersection_of: GO:0032991 ! protein-containing complex
intersection_of: capable_of GO:0004774 ! succinate-CoA ligase activity
@@ -262722,7 +262724,7 @@ is_a: GO:0005153 ! interleukin-8 receptor binding
[Term]
id: GO:0045239
-name: tricarboxylic acid cycle enzyme complex
+name: tricarboxylic acid cycle heteromeric enzyme complex
namespace: cellular_component
def: "Any of the heteromeric enzymes that act in the TCA cycle." [GOC:mah]
subset: goslim_pir
@@ -262757,19 +262759,20 @@ id: GO:0045242
name: isocitrate dehydrogenase complex (NAD+)
namespace: cellular_component
def: "Complex that possesses isocitrate dehydrogenase (NAD+) activity." [GOC:mah]
-is_a: GO:0045239 ! tricarboxylic acid cycle enzyme complex
+is_a: GO:0045239 ! tricarboxylic acid cycle heteromeric enzyme complex
intersection_of: GO:0032991 ! protein-containing complex
intersection_of: capable_of GO:0004449 ! isocitrate dehydrogenase (NAD+) activity
[Term]
id: GO:0045243
-name: cytosolic isocitrate dehydrogenase complex (NAD+)
+name: obsolete cytosolic isocitrate dehydrogenase complex (NAD+)
namespace: cellular_component
-def: "Cytosolic complex that possesses isocitrate dehydrogenase (NAD+) activity." [GOC:mah, GOC:mtg_sensu]
+def: "OBSOLETE. Cytosolic complex that possesses isocitrate dehydrogenase (NAD+) activity." [GOC:mah, GOC:mtg_sensu]
+comment: The reason for obsoletion is that this term is unnecessarily taxon-specific.
synonym: "isocitrate dehydrogenase complex (NAD+)" BROAD []
-is_a: GO:0045246 ! cytosolic tricarboxylic acid cycle enzyme complex
-intersection_of: GO:0045242 ! isocitrate dehydrogenase complex (NAD+)
-intersection_of: part_of GO:0005829 ! cytosol
+property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/26882" xsd:anyURI
+is_obsolete: true
+replaced_by: GO:0045242
[Term]
id: GO:0045244
@@ -262779,21 +262782,20 @@ alt_id: GO:0008325
alt_id: GO:0045245
def: "A heterodimeric enzyme complex, usually composed of an alpha and beta chain. Functions in the TCA cycle, hydrolyzing succinyl-CoA into succinate and CoA, thereby forming GTP." [GOC:jl, PMID:27487822]
synonym: "succinyl-CoA synthetase, GDP-forming" EXACT [CORUM:392]
-is_a: GO:0030062 ! mitochondrial tricarboxylic acid cycle enzyme complex
-is_a: GO:0042709 ! succinate-CoA ligase complex
-intersection_of: GO:0030062 ! mitochondrial tricarboxylic acid cycle enzyme complex
+intersection_of: GO:0032991 ! protein-containing complex
intersection_of: capable_of GO:0004776 ! succinate-CoA ligase (GDP-forming) activity
-intersection_of: part_of GO:0005739 ! mitochondrion
[Term]
id: GO:0045246
-name: cytosolic tricarboxylic acid cycle enzyme complex
+name: obsolete cytosolic tricarboxylic acid cycle enzyme complex
namespace: cellular_component
-def: "Any of the heteromeric enzymes, located in the cytosol, that act in the tricarboxylic acid (TCA) cycle." [GOC:mah, GOC:mtg_sensu]
+def: "OBSOLETE. Any of the heteromeric enzymes, located in the cytosol, that act in the tricarboxylic acid (TCA) cycle." [GOC:mah, GOC:mtg_sensu]
+comment: The reason for obsoletion is that this term is unnecessarily taxon-specific.
synonym: "TCA cycle enzyme complex" BROAD []
synonym: "tricarboxylic acid cycle enzyme complex" BROAD []
-is_a: GO:0045239 ! tricarboxylic acid cycle enzyme complex
-relationship: part_of GO:0005829 ! cytosol
+property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/26882" xsd:anyURI
+is_obsolete: true
+replaced_by: GO:0045239
[Term]
id: GO:0045247
@@ -262855,6 +262857,7 @@ synonym: "alpha-ketoglutarate dehydrogenase complex" EXACT []
synonym: "dihydrolipoamide S-succinyltransferase complex" EXACT []
synonym: "KGDHC" EXACT []
xref: Wikipedia:Oxoglutarate_dehydrogenase_complex
+is_a: GO:0045239 ! tricarboxylic acid cycle heteromeric enzyme complex
is_a: GO:0045240 ! alpha-ketoacid dehydrogenase complex
intersection_of: GO:0032991 ! protein-containing complex
intersection_of: capable_of GO:0034602 ! oxoglutarate dehydrogenase (NAD+) activity
@@ -262893,6 +262896,7 @@ id: GO:0045257
name: succinate dehydrogenase complex (ubiquinone)
namespace: cellular_component
def: "The enzyme that catalyzes the oxidation of succinate and ubiquinone to fumarate and ubiquinol; involved in aerobic respiration, repressed in anaerobic respiration." [GOC:kd, ISBN:0198547684]
+is_a: GO:0045239 ! tricarboxylic acid cycle heteromeric enzyme complex
is_a: GO:0045281 ! succinate dehydrogenase complex
intersection_of: GO:0045281 ! succinate dehydrogenase complex
intersection_of: capable_of GO:0008177 ! succinate dehydrogenase (quinone) activity
diff --git a/src/ontology/imports/go_taxon_constraints.owl b/src/ontology/imports/go_taxon_constraints.owl
index 7add9dec7b..592431402b 100644
--- a/src/ontology/imports/go_taxon_constraints.owl
+++ b/src/ontology/imports/go_taxon_constraints.owl
@@ -21452,6 +21452,35 @@
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+ PMID:28326
+
+
+
+
+
+ PMID:28326
+
+
+
+
@@ -22686,27 +22715,27 @@
-
-
+
+
-
+
-
+
-
+
PMID:17400742
-
+
PMID:17400742
@@ -22859,18 +22888,18 @@
-
-
-
-
-
-
-
-
+
+
+
+
+
+
+
+
-
+
@@ -22878,7 +22907,7 @@
-
+
@@ -22886,11 +22915,11 @@
-
+
-
+
@@ -22898,7 +22927,7 @@
-
+
@@ -22906,64 +22935,64 @@
-
+
-
+
-
+
-
+
PMID:34140356
-
+
PMID:34140356
-
+
https://en.wikipedia.org/wiki/Animal_echolocation
-
+
PMID:34140356
-
+
PMID:34140356
-
+
https://en.wikipedia.org/wiki/Animal_echolocation
-
+
PMID:34140356
-
+
PMID:34140356
@@ -23151,24 +23180,24 @@
-
-
-
-
-
-
-
-
-
-
+
+
+
+
+
+
+
+
+
+
-
+
@@ -23176,7 +23205,7 @@
-
+
@@ -23184,7 +23213,7 @@
-
+
@@ -23192,7 +23221,7 @@
-
+
@@ -23200,7 +23229,7 @@
-
+
@@ -23208,7 +23237,7 @@
-
+
@@ -23216,7 +23245,7 @@
-
+
@@ -23224,7 +23253,7 @@
-
+
@@ -23232,92 +23261,92 @@
-
+
-
+
-
+
-
+
-
+
PMID:21311032
-
+
PMID:21311032
-
+
PMID:21311032
-
+
PMID:21311032
-
+
PMID:21311032
-
+
PMID:21311032
-
+
PMID:21311032
-
+
PMID:21311032
-
+
PMID:21311032
-
+
PMID:21311032
-
+
PMID:21311032
-
+
PMID:21311032
@@ -24955,27 +24984,27 @@
-
-
+
+
-
+
-
+
-
+
PMID:23212898
-
+
PMID:23212898
@@ -28272,27 +28301,27 @@
-
-
+
+
-
+
-
+
-
+
PMID:33031395
-
+
PMID:33031395
@@ -31536,12 +31565,12 @@
-
-
-
+
+
+
-
+
@@ -31549,7 +31578,7 @@
-
+
@@ -31557,26 +31586,26 @@
-
+
-
+
PMID:18068186
-
+
PMID:18068186
-
+
PMID:18068186
@@ -32770,32 +32799,80 @@
-
-
+
+
-
+
-
+
-
+
PMID:24739148
-
+
PMID:24739148
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+ PMID:15557260
+
+
+
+
+
+ PMID:15557260
+
+
+
+
diff --git a/src/taxon_constraints/only_in_taxon.ofn b/src/taxon_constraints/only_in_taxon.ofn
index 1d92847694..e11d305ea2 100644
--- a/src/taxon_constraints/only_in_taxon.ofn
+++ b/src/taxon_constraints/only_in_taxon.ofn
@@ -532,6 +532,7 @@ Declaration(Class())
Declaration(Class())
Declaration(Class())
Declaration(Class())
+Declaration(Class())
Declaration(Class())
Declaration(Class())
Declaration(Class())
@@ -832,6 +833,8 @@ Declaration(Class())
Declaration(Class())
Declaration(Class())
Declaration(Class())
+Declaration(Class())
+Declaration(Class())
Declaration(Class())
Declaration(Class())
Declaration(Class())
@@ -3578,6 +3581,11 @@ SubClassOf( ObjectAllValuesFrom( ObjectSomeValuesFrom( ))
SubClassOf( ObjectAllValuesFrom( ))
+# Class: ()
+
+SubClassOf(Annotation( "PMID:28326"^^xsd:string) ObjectSomeValuesFrom( ))
+SubClassOf(Annotation( "PMID:28326"^^xsd:string) ObjectAllValuesFrom( ))
+
# Class: ()
SubClassOf( ObjectSomeValuesFrom( ))
@@ -5078,6 +5086,16 @@ SubClassOf( ObjectAllValuesFrom( "PMID:24739148"^^xsd:string) ObjectSomeValuesFrom( ))
SubClassOf(Annotation( "PMID:24739148"^^xsd:string) ObjectAllValuesFrom( ))
+# Class: ()
+
+SubClassOf( ObjectSomeValuesFrom( ))
+SubClassOf( ObjectAllValuesFrom( ))
+
+# Class: ()
+
+SubClassOf(Annotation( "PMID:15557260"^^xsd:string) ObjectSomeValuesFrom( ))
+SubClassOf(Annotation( "PMID:15557260"^^xsd:string) ObjectAllValuesFrom( ))
+
# Class: ()
SubClassOf( ObjectSomeValuesFrom( ))
diff --git a/src/taxon_constraints/only_in_taxon.tsv b/src/taxon_constraints/only_in_taxon.tsv
index bf7daba466..36ceda6ba5 100644
--- a/src/taxon_constraints/only_in_taxon.tsv
+++ b/src/taxon_constraints/only_in_taxon.tsv
@@ -890,3 +890,6 @@ GO:0062200 RAM/MOR signaling pathway NCBITaxon:4751 Fungi PMID:23212898
GO:0004164 diphthine synthase activity NCBITaxon:2157 Archaea PMID:24739148
GO:0141133 diphthine methyl ester synthase activity NCBITaxon:2759 Eukaryota PMID:24739148
GO:0000196 cell wall integrity MAPK cascade NCBITaxon:Union_0000007 Viridiplantae or Bacteria or Euglenozoa
+GO:0141152 glycerol-3-phosphate dehydrogenase (NAD+) activity NCBITaxon:2759 Eukaryota
+GO:0047952 glycerol-3-phosphate dehydrogenase [NAD(P)+] NCBITaxon:2 Bacteria PMID:28326
+GO:0141153 glycerol-3-phosphate dehydrogenase (NADP+) activity NCBITaxon:2157 Archaea PMID:15557260