diff --git a/src/ontology/go-edit.obo b/src/ontology/go-edit.obo
index 962f8db5d7..3d9c33954a 100644
--- a/src/ontology/go-edit.obo
+++ b/src/ontology/go-edit.obo
@@ -337183,7 +337183,7 @@ synonym: "tRNA cytosine-2'-O-methyltransferase activity" EXACT []
property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/26018" xsd:anyURI
is_obsolete: true
consider: GO:0106059
-consider: GO:0106339
+consider: GO:0106340
created_by: ai
creation_date: 2010-10-11T01:05:47Z
@@ -441958,37 +441958,37 @@ creation_date: 2020-11-05T17:56:43Z
[Term]
id: GO:0106339
-name: tRNA (cytidine(32)-2'-O)-methyltransferase activity
+name: obsolete tRNA (cytidine(32)-2'-O)-methyltransferase activity
namespace: molecular_function
-def: "Catalysis of the reaction: cytidine(32) in tRNA + S-adenosyl-L-methionine = 2'-O-methylcytidine(32) in tRNA + H+ + S-adenosyl-L-homocysteine." [PMID:25404562, RHEA:42932]
+def: "OBSOLETE. Catalysis of the reaction: cytidine(32) in tRNA + S-adenosyl-L-methionine = 2'-O-methylcytidine(32) in tRNA + H+ + S-adenosyl-L-homocysteine." [PMID:25404562]
+comment: The reason for obsoletion is that this term is equivalent to tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase activity.
synonym: "tRNA (cytidine 32-2'-O)-methyltransferase activity" EXACT []
-xref: EC:2.1.1.200 {source="skos:broadMatch"}
-xref: EC:2.1.1.205 {source="skos:broadMatch"}
-xref: MetaCyc:RXN-11866 {source="skos:exactMatch"}
-xref: RHEA:42396 {source="skos:broadMatch"}
-xref: RHEA:42932 {source="skos:exactMatch"}
-is_a: GO:0016427 ! tRNA (cytidine) methyltransferase activity
property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/24771" xsd:anyURI
property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/26018" xsd:anyURI
property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/26086" xsd:anyURI
property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/28199" xsd:anyURI
+property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/28550" xsd:anyURI
+is_obsolete: true
+replaced_by: GO:0106340
created_by: hjd
creation_date: 2020-11-05T22:48:53Z
[Term]
id: GO:0106340
-name: tRNA (guanine(34)-2'-O)-methyltransferase activity
-namespace: molecular_function
-def: "Catalysis of the reaction: S-adenosyl-L-methionine + guanosine 34 in tRNA= S-adenosyl-L-homocysteine + 2'-O-methylguanosine 34 in tRNA." [PMID:25404562]
-synonym: "tRNA (guanosine 34-2'-O)-methyltransferase activity" EXACT []
-synonym: "tRNA (guanosine(34)-2'-O)-methyltransferase activity" EXACT []
-xref: EC:2.1.1.205 {source="skos:broadMatch"}
-xref: MetaCyc:RXN-11868 {source="skos:exactMatch"}
-xref: RHEA:42396 {source="skos:broadMatch"}
+name: tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase activity
+namespace: molecular_function
+def: "Catalysis of the reaction: cytidine(32)/guanosine(34) in tRNA + 2 S-adenosyl-L-methionine = 2'-O-methylcytidine(32)/2'-O-methylguanosine(34) in tRNA + 2 H+ + 2 S-adenosyl-L-homocysteine." [RHEA:42396]
+synonym: "tRNA (cytidine 32-2'-O)-methyltransferase activity" NARROW []
+synonym: "tRNA (cytidine(32)-2'-O)-methyltransferase activity" NARROW []
+synonym: "tRNA (guanosine 34-2'-O)-methyltransferase activity" NARROW []
+synonym: "tRNA (guanosine(34)-2'-O)-methyltransferase activity" NARROW []
+xref: EC:2.1.1.205
+xref: RHEA:42396
is_a: GO:0016423 ! tRNA (guanine) methyltransferase activity
property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/25257" xsd:anyURI
property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/26085" xsd:anyURI
property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/26086" xsd:anyURI
+property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/28550" xsd:anyURI
created_by: hjd
creation_date: 2020-11-05T22:52:49Z
diff --git a/src/ontology/imports/go-catalytic-activities-participants.owl b/src/ontology/imports/go-catalytic-activities-participants.owl
index 76d050a56c..71b9f24639 100644
--- a/src/ontology/imports/go-catalytic-activities-participants.owl
+++ b/src/ontology/imports/go-catalytic-activities-participants.owl
@@ -175056,50 +175056,7 @@
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
+
@@ -184748,5 +184705,5 @@
-
+
diff --git a/src/ontology/imports/go_taxon_constraints.owl b/src/ontology/imports/go_taxon_constraints.owl
index 114ec85d3d..62e8442a1a 100644
--- a/src/ontology/imports/go_taxon_constraints.owl
+++ b/src/ontology/imports/go_taxon_constraints.owl
@@ -33397,49 +33397,8 @@
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
- PMID:18068186
-
-
-
-
-
- PMID:18068186
-
-
-
-
-
- PMID:18068186
-
@@ -34684,27 +34643,27 @@
-
-
+
+
-
+
-
+
-
+
PMID:24739148
-
+
PMID:24739148
@@ -34732,27 +34691,27 @@
-
-
+
+
-
+
-
+
-
+
PMID:15557260
-
+
PMID:15557260
@@ -34761,27 +34720,27 @@
-
-
+
+
-
+
-
+
-
+
PMID:31546611
-
+
PMID:31546611
@@ -37766,5 +37725,5 @@
-
+
diff --git a/src/taxon_constraints/never_in_taxon.ofn b/src/taxon_constraints/never_in_taxon.ofn
index f3a7d859ac..9812fc689b 100644
--- a/src/taxon_constraints/never_in_taxon.ofn
+++ b/src/taxon_constraints/never_in_taxon.ofn
@@ -372,7 +372,7 @@ Declaration(Class())
Declaration(Class())
Declaration(Class())
Declaration(Class())
-Declaration(Class())
+Declaration(Class())
Declaration(Class())
Declaration(Class())
Declaration(Class())
@@ -3751,12 +3751,12 @@ DisjointClasses( ObjectSomeValuesFrom
DisjointClasses( ObjectSomeValuesFrom( ))
DisjointClasses( ObjectSomeValuesFrom( ))
-# Class: ()
+# Class: ()
-AnnotationAssertion(Annotation( "PMID:18068186"^^xsd:string) )
-SubClassOf(Annotation( "PMID:18068186"^^xsd:string) ObjectComplementOf(ObjectSomeValuesFrom( )))
-SubClassOf(Annotation( "PMID:18068186"^^xsd:string) ObjectSomeValuesFrom( ObjectComplementOf()))
-DisjointClasses(Annotation( "PMID:18068186"^^xsd:string) ObjectSomeValuesFrom( ))
+AnnotationAssertion(Annotation( "PMID:18068186"^^xsd:string) )
+SubClassOf(Annotation( "PMID:18068186"^^xsd:string) ObjectComplementOf(ObjectSomeValuesFrom( )))
+SubClassOf(Annotation( "PMID:18068186"^^xsd:string) ObjectSomeValuesFrom( ObjectComplementOf()))
+DisjointClasses(Annotation( "PMID:18068186"^^xsd:string) ObjectSomeValuesFrom( ))
# Class: ()
diff --git a/src/taxon_constraints/never_in_taxon.tsv b/src/taxon_constraints/never_in_taxon.tsv
index 7c663837a3..49a43aec25 100644
--- a/src/taxon_constraints/never_in_taxon.tsv
+++ b/src/taxon_constraints/never_in_taxon.tsv
@@ -574,7 +574,7 @@ GO:0003365 establishment of cell polarity involved in ameboidal cell migration N
GO:0090398 cellular senescence NCBITaxon:4751 Fungi
GO:0000365 mRNA trans splicing, via spliceosome NCBITaxon:4751 Fungi
GO:0016477 cell migration NCBITaxon:4890 Ascomycota
-GO:0106339 tRNA (cytidine 32-2'-O)-methyltransferase activity NCBITaxon:2157 Archaea PMID:18068186
+GO:0106340 tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase activity NCBITaxon:2157 Archaea PMID:18068186
GO:0035658 Piccolo NuA4 histone acetyltransferase complex NCBITaxon:4896 Schizosaccharomyces pombe PMID:37550452
GO:0002224 toll-like receptor signaling pathway NCBITaxon:7215 Drosophila PMID:30034391
GO:0017015 regulation of transforming growth factor beta receptor signaling pathway NCBITaxon:4751 Fungi
diff --git a/src/taxon_constraints/only_in_taxon.ofn b/src/taxon_constraints/only_in_taxon.ofn
index a1f6e572eb..8cc634be63 100644
--- a/src/taxon_constraints/only_in_taxon.ofn
+++ b/src/taxon_constraints/only_in_taxon.ofn
@@ -178,6 +178,7 @@ Declaration(Class())
Declaration(Class())
Declaration(Class())
Declaration(Class())
+Declaration(Class())
Declaration(Class())
Declaration(Class())
Declaration(Class())
@@ -1838,6 +1839,11 @@ SubClassOf( ObjectAllValuesFrom( ObjectSomeValuesFrom( ))
SubClassOf( ObjectAllValuesFrom( ))
+# Class: ()
+
+SubClassOf( ObjectSomeValuesFrom( ))
+SubClassOf( ObjectAllValuesFrom( ))
+
# Class: ()
SubClassOf( ObjectSomeValuesFrom( ))