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single parent in fam file #58

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s220224 opened this issue Jul 24, 2023 · 0 comments
Open

single parent in fam file #58

s220224 opened this issue Jul 24, 2023 · 0 comments

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@s220224
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s220224 commented Jul 24, 2023

My cohort has 47 samples, some of which I only have data for one parent. In the .fam file, I have missing parents entered as 0. When running linkage with this file, SEQlinkage thinks this '0' is a parent if I have a sample name enetered for the other parent, and fails on the basis that this parents' data is missing. Is there a way to enter a single parent that is compatible with seqlinkage?
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