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index out of range error #46
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@NElight we are working on a new release with @changebio which should be out within 30 days. Do you have a small toy test data you can share (or email to me privately ) so we make sure our new release works without issue on your test data? |
@gaow Any new information about the test data?thank u. |
@NElight we are still working on the release and @changebio will be able to test it on the toy data as we pack up the release, in a couple of weeks from now. Thanks for your patience. |
Hi @NElight @gaow Thank you for your patience. I just released our new version SEQLinkage v2. I have tested your data by the following command line |
Thanks @changebio great I just saw this. Looks like it works. @NElight we have not yet built a docker image for that release, but @changebio has bumped it to Python 3 and streamlined the dependencies, so it should be easy to install using standard pip/conda commands. Still please let us know if there is an issue. |
@gaow @changebio thank u very much |
@changebio thank u , i rerun my test data using the new version SEQLinkage v2,get some ValueError. |
@NElight The bug has been fixed. Please try following commands.
Please let me know if you have any further questions. |
@changebio thank u , i rerun my test data using the new version SEQLinkage v2,get another error. |
Could you send me more details. I cannot repeat your error. Did you get the error form CHP markers and/or single markers? Please show the command you used in the screenshot. @NElight |
@changebio i am sorry for my incomplete information. i run the commands that you recommended, that two commands get the same error. |
@NElight Sorry about the error you got. I still can not replicate the error after you show me your command. But I know where may go wrong. I add a test line in there. you can update our package again, and run on your computer. By the way. I attached all the data and results I got by running SEQLinkage v2 on your test data. Please let me know whether it works on your computer or not. |
when i run seqlink, i get index out of range error. it occur when only one variant in some range.
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