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HISTORY
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commit 1d4aece20c31d40038c89a2a88e36e29d0dff2ec (HEAD, origin/master, origin/HEAD, master)
Author: Gao Wang <[email protected]>
Date: Sat Apr 9 11:10:14 2016 -0500
Properly handle mlink warnings. Version number boosted to 1.0.0
commit 019ab638fd456d1ce3c8b75f748ca5faf13154bc
Author: Gao Wang <[email protected]>
Date: Fri Apr 8 21:25:51 2016 -0500
Update installation script and author affiliation
commit cd8707b466216e6e97e1bdec5afb752ef1b77779
Author: Hang Dai <[email protected]>
Date: Tue Aug 18 18:30:41 2015 -0500
add gray figures
commit 8d2f0610854b48855ca3555e895cf575da124a66
Author: Gao Wang <[email protected]>
Date: Wed Jun 10 15:08:18 2015 -0500
fix: ramdisk command
commit 40b29529bd378cdb2de7db66004d6a1b78c12c2c
Merge: 02498ed c8536e9
Author: Gao Wang Office <[email protected]>
Date: Wed May 13 20:39:35 2015 -0500
Merge branch 'master' of tigerwang.org:SEQLinkage
commit 02498eddfd2d8d20471a2c76ea67ee4e27a76fab
Author: Gao Wang Office <[email protected]>
Date: Wed May 13 20:39:26 2015 -0500
major: add manuscript proof
commit c403d364441829ed7e749f017056bccf26547d2e
Author: Gao Wang Office <[email protected]>
Date: Wed Feb 11 15:29:22 2015 -0600
Changes in script to adapt for git behavior
commit c8536e918dc2683f62c37766a252755514a4f8c0
Author: Linhai Zhao <[email protected]>
Date: Sat Feb 7 23:01:37 2015 -0600
revision on makefile
commit a3bec5d2d4d896d67c32e7fbff1d02917c3d84be
Author: Linhai Zhao <[email protected]>
Date: Sat Feb 7 22:44:29 2015 -0600
commands using simulated vcf data w/o missing calls
commit 124d3574547ea410fce5e30a8b3eebdc2e046181
Author: Gao Wang Office <[email protected]>
Date: Fri Feb 6 12:25:13 2015 -0600
Add test script for Missing data case; data file pending
commit 9750882a1b03bbf0d561d628caf6e5741a29c5a7
Author: Gao Wang Office <[email protected]>
Date: Tue Feb 3 17:31:17 2015 -0600
Format manuscript as requested by the editor
commit fa769b962453b62224a8fd756962b5f26eee66a7
Author: Gao Wang Office <[email protected]>
Date: Mon Feb 2 16:58:13 2015 -0600
Upload manuscript for revision 2
commit 175bfed7c4ea58ac3d417a311bee788594e35ae6
Author: Min Qiao <min@lupinus>
Date: Tue Jan 27 22:03:09 2015 -0600
Finalize revision 2 on my end
commit 6ce5d134980163df3e03b17254810aeb5d0d52d9
Author: Gao Wang Office <[email protected]>
Date: Tue Jan 27 11:12:07 2015 -0600
Upload updated Figure S1A using 2 million replicates
commit 12447c4ada1ff0d96345389ad68cc066a2004967
Author: Di Zhang <[email protected]>
Date: Tue Jan 27 10:26:03 2015 -0600
add 2 million reps for type I error estimation
commit 3014f369ea57cb17d87340220a84bdafa4158b7a
Author: Di Zhang <[email protected]>
Date: Mon Jan 26 13:35:04 2015 -0600
fix: cleanup files of each rep and the seqlink output dir
commit cf9ba9b0c6b31a6030c66a6e10d6598e46bec140
Author: Di Zhang <[email protected]>
Date: Mon Jan 26 13:03:53 2015 -0600
add NoCache class so seqlink can run without archiving everything into ./cache/
commit 876938eb6e390c4d619c20a46e46c2cb03adfbc4
Author: Di Zhang <[email protected]>
Date: Mon Jan 26 12:09:13 2015 -0600
add env.outdir, distinguished from env.output
commit 758bd8c29d684af95a6d5b73c032e5a6a1be8f17
Author: Di Zhang <[email protected]>
Date: Mon Jan 26 11:59:26 2015 -0600
fix Args.isalnum(), only checking the basename of the --output string
commit 61a554839ff7f1b2172528a7de6c65f987875869
Author: Gao Wang Office <[email protected]>
Date: Mon Jan 26 11:06:10 2015 -0600
Ensure each element in an input path is alphanumeric, not the entire path
commit e203ddbf84d79c4f7f0581ec4f6080ab748b6bf4
Author: Di Zhang <[email protected]>
Date: Fri Jan 23 12:07:32 2015 -0600
new lods files
commit 8c84084e5219f6ba350131a2dc787f5b56c654e2
Author: Di Zhang <[email protected]>
Date: Fri Jan 23 12:06:43 2015 -0600
n1a8 final figure-s1
commit 7239cfd1da6ed18954befd1c6d795f6419eb8e6b
Merge: 7c4ba06 4ba868e
Author: Di Zhang <[email protected]>
Date: Fri Jan 23 11:04:16 2015 -0600
Merge branch 'master' of tigerwang.org:SEQLinkage
commit 7c4ba06d526a55d441469fd6ec0fd0c4224550d4
Author: Di Zhang <[email protected]>
Date: Fri Jan 23 11:04:11 2015 -0600
edit length
commit 4ba868eb5b630226eea1eb0f65aefefedff72b2a
Author: Gao Wang Office <[email protected]>
Date: Thu Jan 22 11:33:35 2015 -0600
Edit manuscript
commit 8862088b37de717be084e73db67bf54f06b36700
Author: Di Zhang <[email protected]>
Date: Wed Jan 21 21:09:51 2015 -0600
merlin phased ld parentmissing random seed
commit d1599a78d07a27fd2e35149f6593eb86b93a9ba7
Author: Gao Wang Office <[email protected]>
Date: Wed Jan 21 16:26:04 2015 -0600
polish qq plot script
commit 7073ef1bb45c3d125e833785fc3271a7ddd5a7bb
Author: Di Zhang <[email protected]>
Date: Wed Jan 21 15:39:31 2015 -0600
makefile edit
commit 138d81eab9982051c45232ff4d5f136c6248e811
Author: Di Zhang <[email protected]>
Date: Wed Jan 21 15:35:37 2015 -0600
prephased random seed ld parent missing bin 0.0 and 0.8
commit 133e8614f9adfd973ca511021466228e2dc829a8
Merge: 26a9d57 891a097
Author: Gao Wang Office <[email protected]>
Date: Wed Jan 21 14:28:02 2015 -0600
Merge branch 'master' of tigerwang.org:SEQLinkage
commit 26a9d57ad099d5ebceb8197058ee34c752214d62
Author: Gao Wang Office <[email protected]>
Date: Wed Jan 21 14:27:53 2015 -0600
hide help message for --prephased option
commit 891a09792a85377743834a085f359638f841cf08
Author: Di Zhang <[email protected]>
Date: Wed Jan 21 13:32:52 2015 -0600
rm compiled files
commit 23597795425df2d54387b93ad536f49aa973acc6
Author: Di Zhang <[email protected]>
Date: Wed Jan 21 13:31:43 2015 -0600
bug fix for scipy-0.14
commit 8bd7e783c00bc17fe0adb0dfb8329692bd45dac3
Author: Gao Wang Office <[email protected]>
Date: Wed Jan 21 11:45:27 2015 -0600
implement makefile for type I error plots
commit 77c811a55b25bb36a67574e5d0f28ce61afb7391
Author: Di Zhang <[email protected]>
Date: Wed Jan 21 10:51:31 2015 -0600
dominant
commit 6595e53ee1a43d69ccba8fa36092c4fced88a8a7
Author: Gao Wang Office <[email protected]>
Date: Wed Jan 21 10:26:12 2015 -0600
implelemt prephased option
commit fa265592f55bd9f5f77c729acdba4b5f2a1edfa5
Author: Di Zhang <[email protected]>
Date: Tue Jan 20 10:53:40 2015 -0600
bin 0
commit 484e7975a72fd1b53ec619ad9c82875ae6c9160c
Author: Di Zhang <[email protected]>
Date: Mon Jan 19 23:13:09 2015 -0600
bin 0.8/1.0
commit ab4d2ddc650809c7c94438e5ea71a9af24821e9c
Author: Min Qiao <min@lupinus>
Date: Sun Jan 18 16:50:21 2015 -0600
test interface change
commit 3c35129b368ac2298abb75a8b15712dacffa267b
Author: Di Zhang <[email protected]>
Date: Sun Jan 18 09:23:22 2015 -0600
type I update
commit 7bcc6e8291b13726e924055f96b13c2d3c50cc7e
Merge: fd2cd2c 9667d30
Author: Di Zhang <[email protected]>
Date: Fri Jan 16 11:27:41 2015 -0600
Merge branch 'master' of tigerwang.org:SEQLinkage
commit fd2cd2c99c52407fac6ab066ff032fb70d974f8b
Author: Di Zhang <[email protected]>
Date: Fri Jan 16 11:27:10 2015 -0600
null vs. rec
commit 9667d30c50d208812c59040a7b29123818c6812d
Author: Min Qiao <min@lupinus>
Date: Fri Jan 16 08:37:04 2015 -0600
add QQplots
commit 9160d6cd0ffb9f2e7ed0b8a39d8d71ae17386f19
Author: Di Zhang <[email protected]>
Date: Thu Jan 15 21:40:09 2015 -0600
lods updated
commit 1eb977ff48d44b071897fd6701d1d357ffee0d30
Author: Di Zhang <[email protected]>
Date: Thu Jan 15 21:30:46 2015 -0600
sort tsv
commit 33a45095262018a102f6d189d645d7375ac9588b
Author: Di Zhang <[email protected]>
Date: Thu Jan 15 14:58:23 2015 -0600
sort tsv
commit c24dcc87ec36760c3187261d25f92235da189bee
Merge: 92d5050 2992002
Author: Gao Wang Office <[email protected]>
Date: Wed Jan 14 15:54:12 2015 -0600
Merge branch 'master' of tigerwang.org:SEQLinkage
commit 92d50508b6e28d15457f053f574002b2cef29f1c
Author: Gao Wang Office <[email protected]>
Date: Wed Jan 14 15:53:57 2015 -0600
Add revision 2 draft
commit 29920024aec4f3cf992dfe74e442295e11619051
Author: Biao Li <[email protected]>
Date: Wed Jan 14 14:32:27 2015 -0600
modify recombination rate calculation from centimorgan
commit 25748c23de25bcb2eab9bfc19aa3fbdb9946a81f
Author: Gao Wang Office <[email protected]>
Date: Wed Jan 14 12:35:13 2015 -0600
add updated simulation data with map distances
commit 69ff2450d71f604a04d5c5a791f92848b5015658
Author: Biao Li <[email protected]>
Date: Wed Jan 14 12:32:01 2015 -0600
modify recombination scheme in LinkagePowerCalc.py script
commit 5a56d27c953c21ee08a51dbbbeaec4e4d4431ae7
Author: gw <gw@493babdc-ab97-468b-a2ee-949ea25b5092>
Date: Sun Nov 16 18:48:06 2014 +0000
add references papers
commit 8aa6698de193ac71d9353f1d22ea8e08cd8113d9
Author: gw <gw@493babdc-ab97-468b-a2ee-949ea25b5092>
Date: Fri Nov 7 16:27:59 2014 +0000
upload final ms
commit 152dde7d21eebda351ef3eb73b964008d8cd2e11
Author: gw <gw@493babdc-ab97-468b-a2ee-949ea25b5092>
Date: Wed Nov 5 00:32:52 2014 +0000
revision 1 update, submitted to Suzanne
commit fec6bb0af12a2046879ac6fcd8d1390b91ceb4b8
Author: zhangdi <zhangdi@493babdc-ab97-468b-a2ee-949ea25b5092>
Date: Tue Nov 4 19:54:26 2014 +0000
remove DDDDD
commit 19557af30969dbd84abc6e5da9a49bf8e4dbb2df
Author: biao <biao@493babdc-ab97-468b-a2ee-949ea25b5092>
Date: Tue Nov 4 19:52:21 2014 +0000
update
commit 28a9eb49d72936d41d29e11c3315836fd1f48bc5
Author: biao <biao@493babdc-ab97-468b-a2ee-949ea25b5092>
Date: Tue Nov 4 19:51:25 2014 +0000
update
commit 0bb654ad3d9681017495ad0c8964e29816ca8a5b
Author: zhangdi <zhangdi@493babdc-ab97-468b-a2ee-949ea25b5092>
Date: Tue Nov 4 19:19:22 2014 +0000
bug fixed for lod collector
commit 2b265d5b82b10bc79160e3c6dd9d45d1307c2b73
Author: zhangdi <zhangdi@493babdc-ab97-468b-a2ee-949ea25b5092>
Date: Tue Nov 4 04:41:51 2014 +0000
RunGeneHunter.py ready
commit f42fe98babd3d81a3cac5e9c2cb0c3a03f056181
Author: zhangdi <zhangdi@493babdc-ab97-468b-a2ee-949ea25b5092>
Date: Mon Nov 3 22:07:59 2014 +0000
add RunGeneHunter.py, but with bugs
commit 54d2f9f31d6c019fae588868e7ccfd0ddd80262b
Author: gw <gw@493babdc-ab97-468b-a2ee-949ea25b5092>
Date: Thu Oct 30 20:27:57 2014 +0000
revision update
commit 34284c605ac7b44cbd57d1e2c5b0e9a4b6b3a5db
Author: biao <biao@493babdc-ab97-468b-a2ee-949ea25b5092>
Date: Thu Oct 30 16:59:11 2014 +0000
update
commit bc7b8ecdeaea9a89a0ca33f3d915833536c6cf0c
Author: gw <gw@493babdc-ab97-468b-a2ee-949ea25b5092>
Date: Wed Oct 29 22:33:10 2014 +0000
update revision and respond for ejhg
commit 5fa2137aff3a7f5f61d051e1d57a1119a45ef4e3
Author: biao <biao@493babdc-ab97-468b-a2ee-949ea25b5092>
Date: Wed Oct 29 20:24:37 2014 +0000
update
commit 67840df4f45d2a53786af442859d15bdea83762c
Author: gw <gw@493babdc-ab97-468b-a2ee-949ea25b5092>
Date: Tue Oct 28 22:17:21 2014 +0000
updates to CHP frequency calculation
commit 5708dc2439672b9c44e1121fbed4e53a0677a289
Author: gw <gw@493babdc-ab97-468b-a2ee-949ea25b5092>
Date: Tue Oct 28 19:26:40 2014 +0000
fix getColumn bug
commit ad94b8c3257c721cfc40b24a4be557605296b037
Author: biao <biao@493babdc-ab97-468b-a2ee-949ea25b5092>
Date: Tue Oct 28 18:08:02 2014 +0000
add fakeLD feature to simulation program
commit c39757a8fa8a387cc14e866dad2b936a8c0ede3a
Author: biao <biao@493babdc-ab97-468b-a2ee-949ea25b5092>
Date: Fri Oct 24 17:39:45 2014 +0000
update
commit 66aa2cddfe43b1acf50ad876916e88d00df4a4ae
Author: gw <gw@493babdc-ab97-468b-a2ee-949ea25b5092>
Date: Thu Oct 23 23:22:03 2014 +0000
update R1 respond
commit c0793167b83cbefe82e4734cf67179d9478bba47
Author: biao <biao@493babdc-ab97-468b-a2ee-949ea25b5092>
Date: Thu Oct 23 22:24:33 2014 +0000
update LinkagePowerCal.py
commit 10766385a35cc2e08f1e274e7f3713aed77f6c5d
Author: gw <gw@493babdc-ab97-468b-a2ee-949ea25b5092>
Date: Mon Oct 13 20:03:43 2014 +0000
finalize poster
commit 2278339bc78d0d4e5ff8181faa8954053d8037ea
Author: gw <gw@493babdc-ab97-468b-a2ee-949ea25b5092>
Date: Fri Oct 10 17:04:29 2014 +0000
Add SEQLinkage poster
commit 6ca6d0a1d97f393d9b489ee7ba219c5100fe8841
Author: gw <gw@493babdc-ab97-468b-a2ee-949ea25b5092>
Date: Fri Oct 3 21:07:17 2014 +0000
change mkpath implementation
commit dbb28453bb12d67529550582cfe068f54d9754ce
Author: gw <gw@493babdc-ab97-468b-a2ee-949ea25b5092>
Date: Fri Oct 3 19:41:20 2014 +0000
safely delete empty dirs
commit 45ba576251bc3224e787c64f598d509749d3912e
Author: gw <gw@493babdc-ab97-468b-a2ee-949ea25b5092>
Date: Wed Oct 1 19:07:09 2014 +0000
add material for seqlinkage presentation
commit acc4f71f71d32567b96c1af81fda9f1fcefdcb91
Author: gw <gw@493babdc-ab97-468b-a2ee-949ea25b5092>
Date: Wed Aug 20 22:09:31 2014 +0000
update ms
commit d0ec50fdf30bcf5a859ba82b0b346a448608c328
Author: gw <gw@493babdc-ab97-468b-a2ee-949ea25b5092>
Date: Mon Aug 11 22:28:52 2014 +0000
format EJHG short report
commit 5e65e7da702aaf45945363379730294afdca3d1b
Author: gw <gw@493babdc-ab97-468b-a2ee-949ea25b5092>
Date: Tue Jul 8 22:53:46 2014 +0000
update wiki
commit f7e2d3098fa88209d6a0e79e5eb47c2b122b089f
Author: gw <gw@493babdc-ab97-468b-a2ee-949ea25b5092>
Date: Sun May 18 23:35:21 2014 +0000
update supplemental
commit ec9bb68395e049d0e7e84dc2e9c2570f68a8faf4
Author: min <min@493babdc-ab97-468b-a2ee-949ea25b5092>
Date: Thu May 8 23:15:09 2014 +0000
update docs
commit cccf5aae4cb6154b36dbcb1a1819164669003bca
Author: zhangdi <zhangdi@493babdc-ab97-468b-a2ee-949ea25b5092>
Date: Thu May 8 22:46:54 2014 +0000
linkage programs added
commit 2e2bdbfea0e9a5597158ea05b46eaa15e203306f
Author: gw <gw@493babdc-ab97-468b-a2ee-949ea25b5092>
Date: Thu May 8 22:25:31 2014 +0000
lower case for file names
commit 1911af9a3cba72245e975ebf351643cb3ab90ff4
Author: gw <gw@493babdc-ab97-468b-a2ee-949ea25b5092>
Date: Thu May 8 21:41:17 2014 +0000
disallow imp, use __import__ to check instead
commit f8aa7947c1f0573663da94b9fa44716dc75bb7fe
Author: zhangdi <zhangdi@493babdc-ab97-468b-a2ee-949ea25b5092>
Date: Thu May 8 20:20:54 2014 +0000
format counter bug fixed
commit 30cd0894eb3c6458c5cc7dd597bf56441a9eae94
Author: gw <gw@493babdc-ab97-468b-a2ee-949ea25b5092>
Date: Thu May 8 14:43:11 2014 +0000
update wiki
commit 8535c32038d02da50275d14613d3b9ba241cc6b8
Author: gw <gw@493babdc-ab97-468b-a2ee-949ea25b5092>
Date: Wed May 7 22:51:18 2014 +0000
minor bug fixes
commit 6b004d5aeb18762bd8c90b2ba6b6a3c81af218b6
Author: zhangdi <zhangdi@493babdc-ab97-468b-a2ee-949ea25b5092>
Date: Wed May 7 22:09:32 2014 +0000
add mega2 and merlin examples
commit c4fa96d399c39987a58bac46da56fd15fff8cbb4
Author: gw <gw@493babdc-ab97-468b-a2ee-949ea25b5092>
Date: Wed May 7 21:35:10 2014 +0000
fix release script
commit d280e76e401a355983475d98ff77d38b4a7260e5
Author: zhangdi <zhangdi@493babdc-ab97-468b-a2ee-949ea25b5092>
Date: Wed May 7 20:37:58 2014 +0000
finish Runner alpha
commit c32cef6a43d691acae429f66759705b8c4df3030
Author: gw <gw@493babdc-ab97-468b-a2ee-949ea25b5092>
Date: Wed May 7 20:26:17 2014 +0000
finish up rutgers map documentation
commit e9e2dc67a92d3bc47cc29daae8235cff6e88b6b6
Author: kb <kb@493babdc-ab97-468b-a2ee-949ea25b5092>
Date: Wed May 7 20:03:49 2014 +0000
add the script making blueprint
commit fd430dc5bd4046b34ee7d91646be6bf8998bac65
Author: kb <kb@493babdc-ab97-468b-a2ee-949ea25b5092>
Date: Wed May 7 19:58:32 2014 +0000
add blueprint
commit fc2ceee56e1074a581effdf0c1192ea92116c0b8
Author: zhangdi <zhangdi@493babdc-ab97-468b-a2ee-949ea25b5092>
Date: Wed May 7 19:32:19 2014 +0000
merlin format added
commit 29fa74bd652314c99d4218844e3536a8b67a10f6
Author: zhangdi <zhangdi@493babdc-ab97-468b-a2ee-949ea25b5092>
Date: Wed May 7 18:51:30 2014 +0000
bug fixed
commit f743bd3713213b0b506f187feed8ece0fc9e2c33
Author: zhangdi <zhangdi@493babdc-ab97-468b-a2ee-949ea25b5092>
Date: Wed May 7 18:50:02 2014 +0000
bug fixed
commit b9a6921a1b896363be4cecbb70845268168a6ef0
Author: zhangdi <zhangdi@493babdc-ab97-468b-a2ee-949ea25b5092>
Date: Wed May 7 18:33:09 2014 +0000
mega2 added
commit 8d22bc0fb7eefa2000fed1713e67f06ca0b15052
Author: gw <gw@493babdc-ab97-468b-a2ee-949ea25b5092>
Date: Wed May 7 16:20:28 2014 +0000
update manuscript
commit 9051091ba94fc79ae76ffa91513b24ee41101a7d
Author: gw <gw@493babdc-ab97-468b-a2ee-949ea25b5092>
Date: Mon May 5 22:38:44 2014 +0000
add power db
commit 75983541308481989dabd6af2a2d9f88ac0fc6f7
Author: gw <gw@493babdc-ab97-468b-a2ee-949ea25b5092>
Date: Mon May 5 22:37:39 2014 +0000
upload power figs
commit c43be95e69bc9657eb4a2b078ad83ac5e077cf30
Author: gw <gw@493babdc-ab97-468b-a2ee-949ea25b5092>
Date: Fri May 2 02:38:29 2014 +0000
upload data
commit 582af6b6375e4db820464bd780078b44c9a67eed
Author: zhangdi <zhangdi@493babdc-ab97-468b-a2ee-949ea25b5092>
Date: Thu May 1 19:04:53 2014 +0000
add demo data
commit 44b1816d092e864d8cc3f9476ecd7d49dfc7fa79
Author: gw <gw@493babdc-ab97-468b-a2ee-949ea25b5092>
Date: Thu May 1 14:05:55 2014 +0000
add plot update
commit ad5e4bbe628cab4f7d94d13ed54473a8e7f46033
Author: min <min@493babdc-ab97-468b-a2ee-949ea25b5092>
Date: Thu May 1 14:01:42 2014 +0000
upload power notes
commit 95ed5354491283f29e6dc81c035232fa422d5ba2
Author: gw <gw@493babdc-ab97-468b-a2ee-949ea25b5092>
Date: Mon Apr 28 23:09:01 2014 +0000
update website
commit 8dd70576b6ba15484fd7a4b56bebf0e859441e22
Author: min <min@493babdc-ab97-468b-a2ee-949ea25b5092>
Date: Sat Apr 26 03:24:19 2014 +0000
simulation script is now indep of seqlink
commit 13898f70e490c6d7084ddaa7d2ff5a824285690d
Author: gw <gw@493babdc-ab97-468b-a2ee-949ea25b5092>
Date: Tue Apr 22 04:47:07 2014 +0000
update ms
commit a8125c22e511f0f0a44fbaf29d7c77c4d644111e
Author: zhangdi <zhangdi@493babdc-ab97-468b-a2ee-949ea25b5092>
Date: Mon Apr 21 19:22:25 2014 +0000
SubmitJobs.pbs updated
commit d68e0e12d5ff1dfd2d87c8548d9cb9a503fdfd4d
Author: gw <gw@493babdc-ab97-468b-a2ee-949ea25b5092>
Date: Mon Apr 21 18:18:16 2014 +0000
update simulation results
commit abad4655fb10bf091510b831ed496a994480daf2
Author: gw <gw@493babdc-ab97-468b-a2ee-949ea25b5092>
Date: Fri Apr 18 19:36:27 2014 +0000
bug fix to hlod score collection in simulatio nscript ... have to thus rerun the simulation
commit 9cb2ebc552a377d8b7736d3fb647d1fdf9c3bf80
Author: gw <gw@493babdc-ab97-468b-a2ee-949ea25b5092>
Date: Wed Apr 16 20:57:16 2014 +0000
update docs
commit 25d4669638eb1d1c4ca1e2296aadbaaa880bfcbb
Author: gw <gw@493babdc-ab97-468b-a2ee-949ea25b5092>
Date: Wed Apr 16 03:40:54 2014 +0000
update wiki
commit 8d8aa9ab3f2acddaacfd525d708e88a339eaf7a7
Author: gw <gw@493babdc-ab97-468b-a2ee-949ea25b5092>
Date: Tue Apr 15 22:51:20 2014 +0000
update wiki
commit d52e6c45d55f935c4cbb2dbab6b0a1f18a500ff6
Author: gw <gw@493babdc-ab97-468b-a2ee-949ea25b5092>
Date: Tue Apr 15 22:34:49 2014 +0000
minor fixes
commit 5b87f7f006a32f46b0849366820682aa5bdac4d2
Author: gw <gw@493babdc-ab97-468b-a2ee-949ea25b5092>
Date: Tue Apr 15 18:02:36 2014 +0000
polish html output style
commit 4b403a93399665ead1a2088598c0b2a23f3e8132
Author: gw <gw@493babdc-ab97-468b-a2ee-949ea25b5092>
Date: Tue Apr 15 15:58:42 2014 +0000
more clean up of code
commit 8a9d882e5074b3880c5e9efdae13ba22ea4f7e56
Author: gw <gw@493babdc-ab97-468b-a2ee-949ea25b5092>
Date: Tue Apr 15 04:34:50 2014 +0000
clean up codes
commit 4432a653e6031bac4067ba3ef3c2d8f7e85cd695
Author: zhangdi <zhangdi@493babdc-ab97-468b-a2ee-949ea25b5092>
Date: Fri Apr 11 21:56:08 2014 +0000
progress percent added for linkage pipeline
commit 060d1563a0f702cb78fd299395c489bfb9ef9649
Author: zhangdi <zhangdi@493babdc-ab97-468b-a2ee-949ea25b5092>
Date: Fri Apr 11 15:11:46 2014 +0000
handle freq
commit 6bb4f702978d6f04f5ed088ec3861d2ab3b8146a
Author: gw <gw@493babdc-ab97-468b-a2ee-949ea25b5092>
Date: Fri Apr 11 15:00:43 2014 +0000
allow non zero return code from fastlink
commit 02da0ae215a02108b1d533f19bc3cac5d9f55dc7
Author: gw <gw@493babdc-ab97-468b-a2ee-949ea25b5092>
Date: Thu Apr 10 22:56:50 2014 +0000
add script to build binary release
commit d33d18e6ac11346396b85450abfd3f4345b388c4
Author: gw <gw@493babdc-ab97-468b-a2ee-949ea25b5092>
Date: Thu Apr 10 21:27:56 2014 +0000
update doc
commit a996a53d4a38dd94ceed0da20cfe84d9f142eccb
Author: gw <gw@493babdc-ab97-468b-a2ee-949ea25b5092>
Date: Thu Apr 10 18:56:49 2014 +0000
update doc
commit 8716cf14ac9576235b06a2141db22d66cc76f481
Author: zhangdi <zhangdi@493babdc-ab97-468b-a2ee-949ea25b5092>
Date: Thu Apr 10 16:38:14 2014 +0000
minor fix
commit a37fc8f1fe2eb92655864da41a922d5904dab2ff
Author: gw <gw@493babdc-ab97-468b-a2ee-949ea25b5092>
Date: Thu Apr 10 02:54:54 2014 +0000
accept genemap.txt change
commit 3bb5410db90fee16780dc9d14e1550fa6675d9c6
Author: kb <kb@493babdc-ab97-468b-a2ee-949ea25b5092>
Date: Thu Apr 10 00:30:00 2014 +0000
add genemap_cleaned.txt
commit 73f9d56c821a71793f0ed1d25af7c0b124941dab
Author: kb <kb@493babdc-ab97-468b-a2ee-949ea25b5092>
Date: Thu Apr 10 00:29:02 2014 +0000
cM_genemap_cleaned.txt is new genetic position file for genes
commit 5dbf5f4b12f58bdd2c77c470d499b01ea2b48571
Author: zhangdi <zhangdi@493babdc-ab97-468b-a2ee-949ea25b5092>
Date: Wed Apr 9 22:20:48 2014 +0000
freq handling bug fixed
commit 47ee92902a71df5bdeaea2a9c09b35cf7f6c36a1
Author: zhangdi <zhangdi@493babdc-ab97-468b-a2ee-949ea25b5092>
Date: Wed Apr 9 22:17:48 2014 +0000
freq handle bug fixed
commit 383e8172af31f1ea8ab71743ea707116492f0ba8
Author: zhangdi <zhangdi@493babdc-ab97-468b-a2ee-949ea25b5092>
Date: Wed Apr 9 21:54:36 2014 +0000
freq handle bug fixed
commit 720ea9c1a8a3248a0c6154e03fec5187ee6f3628
Author: zhangdi <zhangdi@493babdc-ab97-468b-a2ee-949ea25b5092>
Date: Wed Apr 9 21:35:00 2014 +0000
Runner bugs fixed
commit 048f4456ab7c5ee7ca35466a87bd9c2487423125
Author: zhangdi <zhangdi@493babdc-ab97-468b-a2ee-949ea25b5092>
Date: Wed Apr 9 21:31:32 2014 +0000
genemap.txt updated
commit 0e095e9398a3defb4365aa230c3dd333252c6571
Author: gw <gw@493babdc-ab97-468b-a2ee-949ea25b5092>
Date: Wed Apr 9 15:56:53 2014 +0000
add --quiet argument
commit 90a392d06cf82c12db9ecc0b24cbb4327aad241d
Author: min <min@493babdc-ab97-468b-a2ee-949ea25b5092>
Date: Wed Apr 9 03:48:45 2014 +0000
update documentation
commit 69c9f0c4e401cb2f2b920062f4a1aab2b1ccf950
Author: gw <gw@493babdc-ab97-468b-a2ee-949ea25b5092>
Date: Tue Apr 8 23:33:12 2014 +0000
update wiki and interface
commit b27174dfe61f1a053d3d09c11a34607096f71355
Author: zhangdi <zhangdi@493babdc-ab97-468b-a2ee-949ea25b5092>
Date: Tue Apr 8 16:33:35 2014 +0000
Simlation in cluster
commit c019d9976f91a4c55c290c84b2f8996c88b0bf60
Author: gw <gw@493babdc-ab97-468b-a2ee-949ea25b5092>
Date: Mon Apr 7 20:37:11 2014 +0000
fix critical bug in simulation script
commit f4ffeba62dd0e119a9e6bfe71bbab795dd6e7da8
Author: gw <gw@493babdc-ab97-468b-a2ee-949ea25b5092>
Date: Mon Apr 7 18:29:43 2014 +0000
fix stupid bu
commit 59f313740ca7be70580da05f2f9b123b0e0a0f17
Author: gw <gw@493babdc-ab97-468b-a2ee-949ea25b5092>
Date: Mon Apr 7 17:04:05 2014 +0000
more fix to simulation script
commit c6f7f2765f316833aefc54d58094b04f2e157b3d
Author: gw <gw@493babdc-ab97-468b-a2ee-949ea25b5092>
Date: Fri Apr 4 21:39:43 2014 +0000
update manuscript and documentation
commit b54c573fdb74a8d29afa660278f5c79c2381ba7d
Author: kb <kb@493babdc-ab97-468b-a2ee-949ea25b5092>
Date: Fri Apr 4 20:37:10 2014 +0000
add symbolic link script
commit 5a19a3edcffe438ed4f82e96b72c2bebefcc6d4a
Author: kb <kb@493babdc-ab97-468b-a2ee-949ea25b5092>
Date: Fri Apr 4 19:29:02 2014 +0000
modified blueprint
commit fe8a31bc8703f93275b2e8008fd396dec17d9f32
Author: gw <gw@493babdc-ab97-468b-a2ee-949ea25b5092>
Date: Fri Apr 4 19:12:44 2014 +0000
update simulation data
commit c6bdab426a7ec4e060e7438251cb30cb6966111a
Author: kb <kb@493babdc-ab97-468b-a2ee-949ea25b5092>
Date: Fri Apr 4 19:10:23 2014 +0000
sorted data
commit e86f1f90f6a9811b39da3464f44bbe0669d1d75e
Author: kb <kb@493babdc-ab97-468b-a2ee-949ea25b5092>
Date: Fri Apr 4 17:24:17 2014 +0000
data daihang
commit f21cc3373809c47e72bd5ea489f909463959734b
Author: gw <gw@493babdc-ab97-468b-a2ee-949ea25b5092>
Date: Fri Apr 4 16:47:54 2014 +0000
minor fix to temp dir
commit 4cea8aa700d7e151631c86fac7595eddd21f4e5e
Author: gw <gw@493babdc-ab97-468b-a2ee-949ea25b5092>
Date: Fri Apr 4 14:18:51 2014 +0000
minor fix
commit f135019b9895fcdec80a47a79f000d3cf9a326e1
Author: gw <gw@493babdc-ab97-468b-a2ee-949ea25b5092>
Date: Fri Apr 4 04:43:02 2014 +0000
fix simulation script: concept was wrong for allelic het and compound recessive\!
commit 07b90c5d89fdcdc04ea208bb58aa7176018a8171
Author: gw <gw@493babdc-ab97-468b-a2ee-949ea25b5092>
Date: Thu Apr 3 22:15:08 2014 +0000
add power plot script and results
commit 502b594b80ba298c3750740cf86387ad21976073
Author: gw <gw@493babdc-ab97-468b-a2ee-949ea25b5092>
Date: Thu Apr 3 18:37:06 2014 +0000
initial simulation result data
commit 5f62e5f95becc2ee7cc973f8abe4e3cf9d0e89d7
Author: gw <gw@493babdc-ab97-468b-a2ee-949ea25b5092>
Date: Thu Apr 3 03:09:59 2014 +0000
update MS and simulation
commit 7852cac9b1117470360937c0ab95766e0d377089
Author: gw <gw@493babdc-ab97-468b-a2ee-949ea25b5092>
Date: Thu Apr 3 03:09:02 2014 +0000
disable plot if --output-entry is zero
commit acb67b942ce37287d63974f7ff2d0c18afe9add2
Author: gw <gw@493babdc-ab97-468b-a2ee-949ea25b5092>
Date: Wed Apr 2 22:23:30 2014 +0000
update simulation scrhip
commit 6c2eeb4dbe6cdb4e927348afde5a4c0f2e683c96
Author: gw <gw@493babdc-ab97-468b-a2ee-949ea25b5092>
Date: Wed Apr 2 22:23:13 2014 +0000
minor bug fix
commit 86a8daa5b8523de41d2a76d62faabbed35d5932b
Author: zhangdi <zhangdi@493babdc-ab97-468b-a2ee-949ea25b5092>
Date: Wed Apr 2 20:59:39 2014 +0000
Empty dir bug fixed
commit e22dd2e77cb595ab1bea6ceb1db19c7a8fc38530
Author: gw <gw@493babdc-ab97-468b-a2ee-949ea25b5092>
Date: Wed Apr 2 20:25:39 2014 +0000
tempdir option
commit b7676ee4b7f2c85ca461cbba65b88dcb2a26eca6
Author: gw <gw@493babdc-ab97-468b-a2ee-949ea25b5092>
Date: Wed Apr 2 19:43:36 2014 +0000
fix env.error exit behavior
commit aa88b9fcc0e662e5bac02c22914b20d6d37da656
Author: zhangdi <zhangdi@493babdc-ab97-468b-a2ee-949ea25b5092>
Date: Wed Apr 2 19:30:34 2014 +0000
rm linkmap lodscore
commit 33e455afa76e466a4493756900007eaa29a473ee
Author: gw <gw@493babdc-ab97-468b-a2ee-949ea25b5092>
Date: Wed Apr 2 19:28:19 2014 +0000
bug fixes
commit 404cd38dfb806a0684d3a95d7f871da1a2409515
Author: zhangdi <zhangdi@493babdc-ab97-468b-a2ee-949ea25b5092>
Date: Wed Apr 2 18:21:21 2014 +0000
indentation bug
commit 324c56294da5c5f22c1ef0aac3040b86108d941f
Author: min <min@493babdc-ab97-468b-a2ee-949ea25b5092>
Date: Wed Apr 2 04:13:40 2014 +0000
reimplement tmp dir mechanism ot allow for multiple instances of the program
commit e6d5301f73bdecb02b106a430473b81bf8227533
Author: gw <gw@493babdc-ab97-468b-a2ee-949ea25b5092>
Date: Tue Apr 1 23:23:54 2014 +0000
add additional parameter single_markers
commit f89016ffc5b05f4ea8f925c6ee38a65ff6f8ed5e
Author: gw <gw@493babdc-ab97-468b-a2ee-949ea25b5092>
Date: Tue Apr 1 23:15:05 2014 +0000
implemented cache
commit 208bf4ff5c37b74509cfd7eeb19b1d47d911435b
Author: zhangdi <zhangdi@493babdc-ab97-468b-a2ee-949ea25b5092>
Date: Tue Apr 1 21:30:10 2014 +0000
tmp_cache
commit da70e41ba722b03c0e1ea391ccbe99c5c2f9cff3
Author: zhangdi <zhangdi@493babdc-ab97-468b-a2ee-949ea25b5092>
Date: Tue Apr 1 21:16:27 2014 +0000
env output
commit 5be0027a1bd289753be29fc222f60d419f870d0b
Author: zhangdi <zhangdi@493babdc-ab97-468b-a2ee-949ea25b5092>
Date: Tue Apr 1 19:42:49 2014 +0000
handle bp
commit 3e2ecdd5d1202102e3bcc68ce1e2f9b1e4a3bb03
Author: gw <gw@493babdc-ab97-468b-a2ee-949ea25b5092>
Date: Tue Apr 1 19:22:40 2014 +0000
minor fixes, still not working