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Problems with the spatial_match function in tutorials #12

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Briskzxm opened this issue Nov 5, 2024 · 0 comments
Open

Problems with the spatial_match function in tutorials #12

Briskzxm opened this issue Nov 5, 2024 · 0 comments

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@Briskzxm
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Briskzxm commented Nov 5, 2024

Hi, @xiachenrui,excellent work!

While reproducing the ‘Basic Usage of SLAT’ and ‘Aligning Across Technologies’ sections of the Readthedocs tutorial, I noticed that the input to the spatial_match function is only the DPCA-processed de-batched embedding (features) that have been processed by DPCA.

This does not seem to match the paper's reference to using cell embedding $Z$. If I'm misunderstanding this, I'm very sorry to bother you and would kindly ask you to clarify this issue.

Thanks!

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