From 9f37e40b4c063619203251273eaf8b7ddbe5f8f5 Mon Sep 17 00:00:00 2001
From: Zhi-Jie Cao <caozj@mail.cbi.pku.edu.cn>
Date: Wed, 15 Jun 2022 14:51:58 +0800
Subject: [PATCH] Update download table

---
 docs/_static/custom.css |  5 ++-
 docs/data.rst           | 71 +++++++++++++++++++++++------------------
 2 files changed, 44 insertions(+), 32 deletions(-)

diff --git a/docs/_static/custom.css b/docs/_static/custom.css
index 1f48b71..4820751 100644
--- a/docs/_static/custom.css
+++ b/docs/_static/custom.css
@@ -1,9 +1,12 @@
+table.docutils td p {
+    font-size: inherit !important;
+}
 .rst-content table.docutils th {
     padding: 8px 4px;
 }
 .rst-content table.docutils td {
     font-size: 80%;
-    padding: 4px 4px;
+    padding: 6px 4px;
 }
 .wy-table-responsive table td {
     white-space: normal !important;
diff --git a/docs/data.rst b/docs/data.rst
index 6cfc913..619919f 100644
--- a/docs/data.rst
+++ b/docs/data.rst
@@ -5,7 +5,7 @@ By courtesy of the original authors, we provide here the following preprocessed
 data files used in our paper:
 
 .. list-table::
-   :widths: 15 15 5 5 35 25
+   :widths: 15 15 5 5 32 3 25
    :header-rows: 1
 
    * - Dataset
@@ -13,73 +13,82 @@ data files used in our paper:
      - Species
      - Organ
      - Publication
+     - Source
      - Processed files
    * - Chen-2019
      - SNARE-seq
      - Mouse
      - Cortex
-     - `High-throughput sequencing of the transcriptome and chromatin accessibility in the same cell <https://doi.org/10.1038/s41587-019-0290-0>`_
-     - | `Chen-2019-RNA.h5ad <http://download.gao-lab.org/GLUE/dataset/Chen-2019-RNA.h5ad>`_,
-       | `Chen-2019-ATAC.h5ad <http://download.gao-lab.org/GLUE/dataset/Chen-2019-ATAC.h5ad>`_
+     - `High-throughput sequencing of the transcriptome and chromatin accessibility in the same cell <https://doi.org/10.1038/s41587-019-0290-0>`__
+     - `GEO <https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE126074>`__
+     - | `Chen-2019-RNA.h5ad <http://download.gao-lab.org/GLUE/dataset/Chen-2019-RNA.h5ad>`__,
+       | `Chen-2019-ATAC.h5ad <http://download.gao-lab.org/GLUE/dataset/Chen-2019-ATAC.h5ad>`__
    * - Ma-2020
      - SHARE-seq
      - Mouse
      - Skin
-     - `Chromatin potential identified by shared single-cell profiling of RNA and chromatin <https://doi.org/10.1016/j.cell.2020.09.056>`_
-     - | `Ma-2020-RNA.h5ad <http://download.gao-lab.org/GLUE/dataset/Ma-2020-RNA.h5ad>`_,
-       | `Ma-2020-ATAC.h5ad <http://download.gao-lab.org/GLUE/dataset/Ma-2020-ATAC.h5ad>`_
+     - `Chromatin potential identified by shared single-cell profiling of RNA and chromatin <https://doi.org/10.1016/j.cell.2020.09.056>`__
+     - `GEO <https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE140203>`__
+     - | `Ma-2020-RNA.h5ad <http://download.gao-lab.org/GLUE/dataset/Ma-2020-RNA.h5ad>`__,
+       | `Ma-2020-ATAC.h5ad <http://download.gao-lab.org/GLUE/dataset/Ma-2020-ATAC.h5ad>`__
    * - 10x-Multiome-Pbmc10k
      - 10x Multiome
      - Human
      - PBMC
      -
-     - | `10x-Multiome-Pbmc10k-RNA.h5ad <http://download.gao-lab.org/GLUE/dataset/10x-Multiome-Pbmc10k-RNA.h5ad>`_,
-       | `10x-Multiome-Pbmc10k-ATAC.h5ad <http://download.gao-lab.org/GLUE/dataset/10x-Multiome-Pbmc10k-ATAC.h5ad>`_
+     - `10x Demo <https://support.10xgenomics.com/single-cell-multiome-atac-gex/datasets/1.0.0/pbmc_granulocyte_sorted_10k>`__
+     - | `10x-Multiome-Pbmc10k-RNA.h5ad <http://download.gao-lab.org/GLUE/dataset/10x-Multiome-Pbmc10k-RNA.h5ad>`__,
+       | `10x-Multiome-Pbmc10k-ATAC.h5ad <http://download.gao-lab.org/GLUE/dataset/10x-Multiome-Pbmc10k-ATAC.h5ad>`__
    * - Saunders-2018
      - Drop-seq
      - Mouse
      - Cortex
-     - `Molecular diversity and specializations among the cells of the adult mouse brain <https://doi.org/10.1016/j.cell.2018.07.028>`_
-     - `Saunders-2018.h5ad <http://download.gao-lab.org/GLUE/dataset/Saunders-2018.h5ad>`_
+     - `Molecular diversity and specializations among the cells of the adult mouse brain <https://doi.org/10.1016/j.cell.2018.07.028>`__
+     - `dropviz <http://dropviz.org/>`__
+     - `Saunders-2018.h5ad <http://download.gao-lab.org/GLUE/dataset/Saunders-2018.h5ad>`__
    * - Luo-2017
      - snmC-seq
      - Mouse
      - Cortex
-     - `Single-cell methylomes identify neuronal subtypes and regulatory elements in mammalian cortex <https://doi.org/10.1126/science.aan3351>`_
-     - `Luo-2017.h5ad <http://download.gao-lab.org/GLUE/dataset/Luo-2017.h5ad>`_
+     - `Single-cell methylomes identify neuronal subtypes and regulatory elements in mammalian cortex <https://doi.org/10.1126/science.aan3351>`__
+     - `annoj <https://brainome.ucsd.edu/annoj/brain_single_nuclei/>`__
+     - `Luo-2017.h5ad <http://download.gao-lab.org/GLUE/dataset/Luo-2017.h5ad>`__
    * - 10x-ATAC-Brain5k
      - 10x ATAC
      - Mouse
      - Cortex
      -
-     - `10x-ATAC-Brain5k.h5ad <http://download.gao-lab.org/GLUE/dataset/10x-ATAC-Brain5k.h5ad>`_
+     - `10x Demo <https://support.10xgenomics.com/single-cell-atac/datasets/1.1.0/atac_v1_adult_brain_fresh_5k>`__
+     - `10x-ATAC-Brain5k.h5ad <http://download.gao-lab.org/GLUE/dataset/10x-ATAC-Brain5k.h5ad>`__
    * - Cao-2020
      - sci-RNA-seq3
      - Human
      - 15 organs
-     - `A human cell atlas of fetal gene expression <https://doi.org/10.1126/science.aba7721>`_
-     - `Cao-2020.h5ad <http://download.gao-lab.org/GLUE/dataset/Cao-2020.h5ad>`_
+     - `A human cell atlas of fetal gene expression <https://doi.org/10.1126/science.aba7721>`__
+     - `GEO <https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE156793>`__
+     - `Cao-2020.h5ad <http://download.gao-lab.org/GLUE/dataset/Cao-2020.h5ad>`__
    * - Domcke-2020
      - sci-ATAC-seq3
      - Human
      - 15 organs
-     - `A human cell atlas of fetal chromatin accessibility <https://doi.org/10.1126/science.aba7612>`_
-     - `Domcke-2020.h5ad <http://download.gao-lab.org/GLUE/dataset/Domcke-2020.h5ad>`_
+     - `A human cell atlas of fetal chromatin accessibility <https://doi.org/10.1126/science.aba7612>`__
+     - `GEO <https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE149683>`__
+     - `Domcke-2020.h5ad <http://download.gao-lab.org/GLUE/dataset/Domcke-2020.h5ad>`__
    * - Muto-2021
      - | snRNA-seq,
        | scATAC-seq
      - Human
      - Kidney
-     - `Single cell transcriptional and chromatin accessibility profiling redefine cellular heterogeneity in the adult human kidney <https://doi.org/10.1038/s41467-021-22368-w>`_
-     - | `Muto-2021-RNA.h5ad <http://download.gao-lab.org/GLUE/dataset/Muto-2021-RNA.h5ad>`_,
-       | `Muto-2021-ATAC.h5ad <http://download.gao-lab.org/GLUE/dataset/Muto-2021-ATAC.h5ad>`_
-
-
-.. * - Yao-2021
-..   - | 10x RNA v3,
-..     | snATAC-seq
-..   - Mouse
-..   - MOp
-..   - `A transcriptomic and epigenomic cell atlas of the mouse primary motor cortex <https://doi.org/10.1038/s41586-021-03500-8>`_
-..   - | `Yao-2021-RNA.h5ad <http://download.gao-lab.org/GLUE/dataset/Yao-2021-RNA.h5ad>`_,
-..     | `Yao-2021-ATAC.h5ad <http://download.gao-lab.org/GLUE/dataset/Yao-2021-ATAC.h5ad>`_
+     - `Single cell transcriptional and chromatin accessibility profiling redefine cellular heterogeneity in the adult human kidney <https://doi.org/10.1038/s41467-021-22368-w>`__
+     - `GEO <https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE151302>`__
+     - | `Muto-2021-RNA.h5ad <http://download.gao-lab.org/GLUE/dataset/Muto-2021-RNA.h5ad>`__,
+       | `Muto-2021-ATAC.h5ad <http://download.gao-lab.org/GLUE/dataset/Muto-2021-ATAC.h5ad>`__
+   * - Yao-2021
+     - | 10x RNA v3,
+       | snATAC-seq
+     - Mouse
+     - MOp
+     - `A transcriptomic and epigenomic cell atlas of the mouse primary motor cortex <https://doi.org/10.1038/s41586-021-03500-8>`__
+     - `NeMO <https://assets.nemoarchive .org/dat-ch1nqb7>`__
+     - | `Yao-2021-RNA.h5ad <http://download.gao-lab.org/GLUE/dataset/Yao-2021-RNA.h5ad>`__,
+       | `Yao-2021-ATAC.h5ad <http://download.gao-lab.org/GLUE/dataset/Yao-2021-ATAC.h5ad>`__