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Experiments

All datasets used in experiments are publicly avaliable, please see our manuscript for more details.

Each dir contains single experiment, dir name follow: {species}_{organ}_{dataset} style. Inside each dir, there are series python files, for example:

  1. 1-prepare_data.py: get the data and do necessary filter/pre-process
  2. 2-run.py: run the model
  3. 3-analysis_results.py: analysis the model output or other customized analysis

The input files are expected to be stored in /data subdir. And results will be stored in /results subdir.