test.yml

name: tests

on:
  push:
    branches: [main]
    tags: ["v*"] # Push events to matching v*, i.e. v1.0, v20.15.10
  pull_request: {}
  workflow_dispatch:

concurrency:
  group: ${{ github.workflow }}-${{ github.ref }}
  cancel-in-progress: true

jobs:
  test:
    name: ${{ matrix.platform }} py${{ matrix.python-version }}
    runs-on: ${{ matrix.platform }}
    strategy:
      matrix:
        platform: [ubuntu-latest, windows-latest, macos-latest]
        python-version: ["3.10", "3.11"]

    steps:
      - uses: actions/checkout@v3

      - name: Set up Python ${{ matrix.python-version }}
        uses: actions/setup-python@v4
        with:
          python-version: ${{ matrix.python-version }}

      # these libraries enable testing on Qt on linux and OpenGL on Windows
      - uses: pyvista/setup-headless-display-action@v2
        with:
          qt: true

      # note: if you need dependencies from conda, considering using
      # setup-miniconda: https://github.com/conda-incubator/setup-miniconda
      - name: Install conda dependencies
        uses: conda-incubator/setup-miniconda@v3
        with:
          python-version: ${{ matrix.python-version }}
          environment-file: conda_config.yml
          channel-priority: true

      - name: Install pip dependencies
        shell: bash -el {0} # this is necessary to activate the conda env
        run: |
          pip install ".[testing]"

      - name: Test with pytest
        shell: bash -el {0}
        run: |
          pytest --color=yes --cov=motile-napari-plugin --cov-report=xml --cov-report=term-missing tests

      - name: Coverage
        uses: codecov/codecov-action@v4
        with:
          token: ${{ secrets.CODECOV_TOKEN }}
          slug: funkelab/motile-napari-plugin