From a6378a6a36b0e3bf066d9aa859eeea20b7c496bc Mon Sep 17 00:00:00 2001
From: Nils Homer <nilshomer@gmail.com>
Date: Fri, 17 Jan 2025 22:27:52 -0700
Subject: [PATCH] debug

---
 pybwa/libbwamem.pyx | 3 ---
 1 file changed, 3 deletions(-)

diff --git a/pybwa/libbwamem.pyx b/pybwa/libbwamem.pyx
index df71e89..aec8bbd 100644
--- a/pybwa/libbwamem.pyx
+++ b/pybwa/libbwamem.pyx
@@ -792,7 +792,6 @@ cdef class BwaMem:
         cdef bseq1_t* seq
         cdef char* s_char
         cdef kstring_t* kstr
-        cdef mem_alnreg_v mem_alnregs
         cdef int take_all
         cdef size_t j
         cdef char **XA
@@ -926,8 +925,6 @@ cdef class BwaMem:
             else:
                 self._add_sa_tag(mapped_recs)
                 recs_to_return.append(mapped_recs)
-            sys.stderr.write(f"[loop] end free'ing mem_alnregs.a i={i}\n")
-            free(mem_alnregs.a)
 
         sys.stderr.write(f"[loop] end free'ing\n")
         for i in range(num_seqs):