From 7a5a4da2549a7af2e01b91f092d8255888ca64cc Mon Sep 17 00:00:00 2001 From: Nils Homer Date: Thu, 16 Jan 2025 11:01:07 -0700 Subject: [PATCH] timfmt --- .../fulcrumgenomics/alignment/Aligner.scala | 20 +++++++++---------- 1 file changed, 10 insertions(+), 10 deletions(-) diff --git a/src/main/scala/com/fulcrumgenomics/alignment/Aligner.scala b/src/main/scala/com/fulcrumgenomics/alignment/Aligner.scala index 9499fe021..f33549edd 100644 --- a/src/main/scala/com/fulcrumgenomics/alignment/Aligner.scala +++ b/src/main/scala/com/fulcrumgenomics/alignment/Aligner.scala @@ -136,11 +136,11 @@ object Aligner { private var matrices: Array[CachedAlignmentMatrix] = AllDirections.sorted.map { dir => CachedAlignmentMatrix( - direction=dir, - scoring=Matrix[Int](initQueryLength, initTargetLength), - trace=Matrix[Int](initQueryLength, initTargetLength), - queryLength=initQueryLength, - targetLength=initTargetLength, + direction = dir, + scoring = Matrix[Int](initQueryLength, initTargetLength), + trace = Matrix[Int](initQueryLength, initTargetLength), + queryLength = initQueryLength, + targetLength = initTargetLength, ) }.toArray @@ -150,11 +150,11 @@ object Aligner { val yLength = math.max(target.length, this.matrices(0).scoring.y) this.matrices = AllDirections.sorted.map { dir => CachedAlignmentMatrix( - direction=dir, - scoring=Matrix[Int](xLength, yLength), - trace=Matrix[Int](xLength, yLength), - queryLength=query.length, - targetLength=target.length, + direction = dir, + scoring = Matrix[Int](xLength, yLength), + trace = Matrix[Int](xLength, yLength), + queryLength = query.length, + targetLength = target.length, ) }.toArray } else if (this.matrices(0).queryLength != query.length || this.matrices(0).targetLength != target.length) {