From 51369ba69807190f95c2727d0728a25fae582e57 Mon Sep 17 00:00:00 2001
From: John Didion <github@didion.net>
Date: Mon, 15 Jul 2024 10:32:13 -0700
Subject: [PATCH] Update
 src/main/scala/com/fulcrumgenomics/umi/CopyUmiFromReadName.scala

Co-authored-by: Nils Homer <nh13@users.noreply.github.com>
---
 .../fulcrumgenomics/umi/CopyUmiFromReadName.scala  | 14 ++++++++------
 1 file changed, 8 insertions(+), 6 deletions(-)

diff --git a/src/main/scala/com/fulcrumgenomics/umi/CopyUmiFromReadName.scala b/src/main/scala/com/fulcrumgenomics/umi/CopyUmiFromReadName.scala
index b8f5274d9..bd26525d9 100644
--- a/src/main/scala/com/fulcrumgenomics/umi/CopyUmiFromReadName.scala
+++ b/src/main/scala/com/fulcrumgenomics/umi/CopyUmiFromReadName.scala
@@ -71,12 +71,14 @@ class CopyUmiFromReadName
     val progress = new ProgressLogger(logger)
     source.foreach { rec =>
       progress.record(rec)
-      writer += Umis.copyUmiFromReadName(rec=rec, 
-                                         removeUmi=removeUmi,
-                                         fieldDelimiter=fieldDelimiter,
-                                         umiDelimiter=umiDelimiter,
-                                         rcPrefix=rcPrefix,
-                                         normalizeRcUmis=normalizeRcUmis)
+      writer += Umis.copyUmiFromReadName(
+        rec             = rec, 
+        removeUmi       = removeUmi,
+        fieldDelimiter  = fieldDelimiter,
+        umiDelimiter    = umiDelimiter,
+        rcPrefix        = rcPrefix,
+        normalizeRcUmis = normalizeRcUmis
+      )
     }
     progress.logLast()
     source.safelyClose()