From 20d57bb4e2617ec1fab1f2c6f9f10313de4a2198 Mon Sep 17 00:00:00 2001
From: Yossi Farjoun <yossi@fulcrumgenomics.com>
Date: Mon, 9 Sep 2024 17:54:40 -0400
Subject: [PATCH] rescue int->str for svlengths

---
 src/sniffles/vcf.py | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/src/sniffles/vcf.py b/src/sniffles/vcf.py
index 3b990af..eef59b8 100755
--- a/src/sniffles/vcf.py
+++ b/src/sniffles/vcf.py
@@ -222,7 +222,7 @@ def write_call(self, call):
         infos = {
             "SVTYPE": call.svtype,
             "SVLEN": call.svlen,
-            "SVLENGTHS": call.svlens,
+            "SVLENGTHS": ",".join(str(sv_len) for sv_len in call.svlens),
             "END": end,
             "SUPPORT": call.support,
             "RNAMES": call.rnames if self.config.output_rnames else None,