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from the logs during the run , some variants missing because 2024-11-15T07:51:51.039Z INFO 3569330 --- [ main] o.m.e.core.genome.VariantFactoryImpl : Processed 152553 variant records into 151746 single allele variants (including 0 structural variants) ..
Sorry about the late reply - some variant in scaffold and unplaced regions will not be annotated or assessed, in addition variants which are homozygous ref (0/0) for the proband will not be assessed, even if analysisMode=FULL has been used.
Were you trying to use Exomiser to annotate the variants from a VCF for further downstream analysis?
Sorry about the late reply - some variant in scaffold and unplaced regions will not be annotated or assessed, in addition variants which are homozygous ref (0/0) for the proband will not be assessed, even if analysisMode=FULL has been used.
Were you trying to use Exomiser to annotate the variants from a VCF for further downstream analysis?
approximately 1% variants can not find in final result
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