NAMESPACE

# Generated by roxygen2: do not edit by hand

export(assign_seqinfo)
export(calc_gc)
export(calc_ifs_z_score)
export(calc_pois_pval)
export(calc_pois_pval_local)
export(call_hotspot)
export(check_binaries)
export(enrichment_analysis)
export(gc_correct)
export(ifs_score)
export(jaccard_index)
export(read_fragments)
export(signal_level_analysis)
import(dplyr)
import(here)
import(purrr)
import(stringr)
importFrom(GenomeInfoDb,`seqinfo<-`)
importFrom(GenomeInfoDb,`seqlevels<-`)
importFrom(GenomeInfoDb,`seqnames<-`)
importFrom(GenomeInfoDb,keepSeqlevels)
importFrom(GenomeInfoDb,seqinfo)
importFrom(GenomeInfoDb,seqlengths)
importFrom(GenomeInfoDb,seqlevels)
importFrom(GenomeInfoDb,seqnames)
importFrom(GenomicRanges,`end<-`)
importFrom(GenomicRanges,`mcols<-`)
importFrom(GenomicRanges,`ranges<-`)
importFrom(GenomicRanges,`start<-`)
importFrom(GenomicRanges,`strand<-`)
importFrom(GenomicRanges,`width<-`)
importFrom(GenomicRanges,countOverlaps)
importFrom(GenomicRanges,end)
importFrom(GenomicRanges,findOverlaps)
importFrom(GenomicRanges,makeGRangesFromDataFrame)
importFrom(GenomicRanges,mcols)
importFrom(GenomicRanges,pintersect)
importFrom(GenomicRanges,ranges)
importFrom(GenomicRanges,start)
importFrom(GenomicRanges,strand)
importFrom(GenomicRanges,width)
importFrom(Rcpp,sourceCpp)
importFrom(S4Vectors,from)
importFrom(S4Vectors,queryHits)
importFrom(S4Vectors,subjectHits)
importFrom(S4Vectors,to)
importFrom(assertthat,assert_that)
importFrom(data.table,as.data.table)
importFrom(data.table,data.table)
importFrom(data.table,fread)
importFrom(data.table,fwrite)
importFrom(data.table,rbindlist)
importFrom(data.table,setDT)
importFrom(data.table,setkey)
importFrom(data.table,setnames)
importFrom(data.table,shift)
importFrom(magrittr,`%<>%`)
importFrom(rlang,is_null)
importFrom(rlang,is_true)
useDynLib(cragr, .registration = TRUE)