From d0885f4667055ecc88cdbd1a8eec7d65e9b9a53a Mon Sep 17 00:00:00 2001 From: "dependabot[bot]" <49699333+dependabot[bot]@users.noreply.github.com> Date: Mon, 28 Oct 2024 05:41:48 +0000 Subject: [PATCH 1/5] Bump mkdocstrings[python-legacy] from 0.26.1 to 0.26.2 (#793) MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit Bumps [mkdocstrings[python-legacy]](https://github.com/mkdocstrings/mkdocstrings) from 0.26.1 to 0.26.2.
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0.26.2 - 2024-10-12

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0.26.2 - 2024-10-12

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Signed-off-by: dependabot[bot] Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> --- requirements_docs.txt | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/requirements_docs.txt b/requirements_docs.txt index d6cbd7340..a5fe82b89 100644 --- a/requirements_docs.txt +++ b/requirements_docs.txt @@ -5,5 +5,5 @@ mkdocs-awesome-pages-plugin~=2.9 mkdocs-material~=9.5; python_version>="3.8" mkdocs-material~=9.2; python_version<"3.8" mkdocstrings[python-legacy]~=0.26.2; python_version>="3.9" -mkdocstrings[python-legacy]==0.26.1; python_version=="3.8" +mkdocstrings[python-legacy]==0.26.2; python_version=="3.8" mkdocstrings[python-legacy]~=0.22.0; python_version<"3.8" From 3404d46bc0996d1b9840cd66beb50c8577ca78d0 Mon Sep 17 00:00:00 2001 From: "dependabot[bot]" <49699333+dependabot[bot]@users.noreply.github.com> Date: Mon, 28 Oct 2024 05:47:52 +0000 Subject: [PATCH 2/5] Bump pylint from 3.2 to 3.3.1 (#794) Bumps [pylint](https://github.com/pylint-dev/pylint) from 3.2 to 3.3.1.
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[![Dependabot compatibility score](https://dependabot-badges.githubapp.com/badges/compatibility_score?dependency-name=pylint&package-manager=pip&previous-version=3.2&new-version=3.3.1)](https://docs.github.com/en/github/managing-security-vulnerabilities/about-dependabot-security-updates#about-compatibility-scores) Dependabot will resolve any conflicts with this PR as long as you don't alter it yourself. You can also trigger a rebase manually by commenting `@dependabot rebase`. [//]: # (dependabot-automerge-start) [//]: # (dependabot-automerge-end) ---
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Signed-off-by: dependabot[bot] Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> --- requirements_dev.txt | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/requirements_dev.txt b/requirements_dev.txt index 947212893..9dd345371 100644 --- a/requirements_dev.txt +++ b/requirements_dev.txt @@ -1,7 +1,7 @@ pre-commit>=2.21.0,<3; python_version<"3.9" pre-commit~=4.0; python_version>="3.9" pylint~=2.17; python_version<"3.8" -pylint==3.2; python_version=="3.8" +pylint==3.3.1; python_version=="3.8" pylint~=3.3; python_version>="3.9" pytest~=7.4; python_version<"3.8" pytest~=8.3; python_version>="3.8" From e5fec8aee2c46748c8fede90e190ed9ccca89c82 Mon Sep 17 00:00:00 2001 From: "dependabot[bot]" <49699333+dependabot[bot]@users.noreply.github.com> Date: Tue, 29 Oct 2024 14:07:56 +0000 Subject: [PATCH 3/5] Update owlready2 requirement from !=0.32,!=0.34,<0.45,>=0.28 to >=0.28,!=0.32,!=0.34,<0.48 (#787) Updates the requirements on [owlready2](https://bitbucket.org/jibalamy/owlready2) to permit the latest version.
Commits
  • 8a7a207 Add an option to hermit reasoner to ignore unsupported datatypes
  • fb3a5a3 Merged in master (pull request #22)
  • 7046847 Remove warning when Cython module is not available; work on observe
  • 7c39ad0 Update import OMOP CDM for their new CSV format
  • 59d1a60 fix IRI() return type in SPARQL
  • 8228d1c fix IRI() return type in SPARQL
  • db7be8d Basic support for enumerated datatypes
  • 4752525 Fix SPARQL queries with two UNIONs when there is no shared variables between ...
  • 6e95147 reasoning.rst edited online with Bitbucket
  • 6f43420 Merged in Amin-mazrouei/reasoningrst-edited-online-with-bitbucke-170911531500...
  • Additional commits viewable in compare view

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Signed-off-by: dependabot[bot] Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> --- requirements.txt | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/requirements.txt b/requirements.txt index 10ef9c3a1..7855eaf40 100644 --- a/requirements.txt +++ b/requirements.txt @@ -4,7 +4,7 @@ defusedxml>=0.7.1,<1 graphviz>=0.16,<0.21 numpy>=1.19.5,<3 openpyxl>=3.0.9,<3.2 -Owlready2>=0.28,!=0.32,!=0.34,<0.47 +Owlready2>=0.28,!=0.32,!=0.34,<0.48 packaging>=21.0,<25 pandas>=1.2,<2.3 Pygments>=2.7.4,<3 From aea46fbe51ad5743fce2e9346059ff713b56d27f Mon Sep 17 00:00:00 2001 From: "Francesca L. Bleken" <48128015+francescalb@users.noreply.github.com> Date: Wed, 30 Oct 2024 10:24:38 +0100 Subject: [PATCH 4/5] Update requirements_dev.txt --- requirements_dev.txt | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/requirements_dev.txt b/requirements_dev.txt index 9dd345371..9060659b9 100644 --- a/requirements_dev.txt +++ b/requirements_dev.txt @@ -1,7 +1,7 @@ pre-commit>=2.21.0,<3; python_version<"3.9" pre-commit~=4.0; python_version>="3.9" pylint~=2.17; python_version<"3.8" -pylint==3.3.1; python_version=="3.8" +pylint==3.2.7; python_version=="3.8" pylint~=3.3; python_version>="3.9" pytest~=7.4; python_version<"3.8" pytest~=8.3; python_version>="3.8" From 1a8886c6bb3a4e8baeebe15443eb8774c5afab9c Mon Sep 17 00:00:00 2001 From: "Francesca L. Bleken" <48128015+francescalb@users.noreply.github.com> Date: Wed, 30 Oct 2024 15:09:38 +0100 Subject: [PATCH 5/5] Update requirements_docs.txt --- requirements_docs.txt | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/requirements_docs.txt b/requirements_docs.txt index a5fe82b89..d6cbd7340 100644 --- a/requirements_docs.txt +++ b/requirements_docs.txt @@ -5,5 +5,5 @@ mkdocs-awesome-pages-plugin~=2.9 mkdocs-material~=9.5; python_version>="3.8" mkdocs-material~=9.2; python_version<"3.8" mkdocstrings[python-legacy]~=0.26.2; python_version>="3.9" -mkdocstrings[python-legacy]==0.26.2; python_version=="3.8" +mkdocstrings[python-legacy]==0.26.1; python_version=="3.8" mkdocstrings[python-legacy]~=0.22.0; python_version<"3.8"