_quarto.yml

project:
  type: book
  # lib-dir: "renv/library/R-4.4/aarch64-apple-darwin20/"
  pre-render: "utils.R"
  render:
     - "!internal/"
     - "!outputs/"
     - "!vignettes/"
     - "supp_mat/"
  execute-dir: project

book:
  chapters:
    - index.qmd
  appendices:
    - supp_mat/SM1_summary.qmd
    - supp_mat/SM2_EffectSizeAnalysis.qmd
    - supp_mat/SM3_ExplainingDeviation.qmd
    - supp_mat/SM4_case_study_datasets.qmd
  page-navigation: true
  sidebar: false
  favicon: 'inst/hex_keys/ManyEcoEvoHex.jpg'
  google-analytics: 
    tracking-id: 'G-FCEPG8QE44'
    anonymize-ip: true
  cookie-consent:
    type: implied
    style: simple
    palette: light
  twitter-card: true
  # collapse-level: 3
    # pinned: true

crossref:
  appendix-title: "SM"
  appendix-delim: ":"

format:
  html:
    theme: 
      - cosmo
    comments:
      hypothesis: false
    citations-hover: true
    crossrefs-hover: true
    toc: true
    html-math-method: mathjax
    include-in-header:
      - text: |
          <script>
          window.MathJax = {
            loader: {
              load: ['[tex]/physics'] // extensions to load
            },
            tex: {
              packages: {'[+]': ['physics']},
            }
          };
          </script>
    code-link: true
css: "stylefile.css"
  
    # toc-location: left
    # number-depth: 1
#  docx: default
#  hikmah-pdf: 
#    keep-tex: true

  # (other formats)
  # pdf: default

# execute:
#   freeze: false
#   cache: false



# ---- manuscript ----
# project:
#   type: manuscript
#   render:
#      - "!internal/"
#      - "!outputs/"
#      - "!vignettes/"
#      - "supp_mat/"
# 
# manuscript:
#   article: index.qmd
# 
# 
# format:
#   html:
#     comments:
#       hypothesis: false
#     citations-hover: true
#     crossrefs-hover: true
#     toc: true
#     toc-location: left
#     #title-block-style: manuscript
#   # docx: default
#   hikmah-docx: default
#   hikmah-pdf: default
# 
#   # (other formats)
#   # pdf: default
# 
# execute:
#   freeze: true