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spc.est_spectra stalls and go to next step after some epochs #23

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kvshams opened this issue Jun 16, 2023 · 0 comments
Open

spc.est_spectra stalls and go to next step after some epochs #23

kvshams opened this issue Jun 16, 2023 · 0 comments

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@kvshams
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kvshams commented Jun 16, 2023

In my data set (114k cells 100 gene sets and 10 cell types), spc.est_spectra stops after some epochs without any error message. Most of the outputs are being populated in adata except the adata.var['spectra_vocab']. This stoping behaviour is different if I re-run the data, ie 12% ,32% ,58% and 4% out of 10k epochs. I have not changed any parameters or compute nodes/vm. I have simply restarted my Jupyter notebook to rerun and see what is happening.

@kvshams kvshams changed the title spc.est_spectra stalls after some epochs spc.est_spectra stalls and go to next step after some epochs Jun 16, 2023
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