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I an looking into integrating phenograph into a web-based Flask app that writes temporary caches in a specified directory. I noticed that when calling the cluster function from phenograph:
communities, graph, Q = phenograph.cluster(pd.DataFrame(adata.obsm['X_pca']),k=k) # run PhenoGraph
Several intermediate files are written in the current working directory:
Is it possible to direct phenograph to write these files in a tmp directory? For the purposes of the application, it is not desirable to have the tmp files written where the application source code is hosted.
The text was updated successfully, but these errors were encountered:
I an looking into integrating phenograph into a web-based Flask app that writes temporary caches in a specified directory. I noticed that when calling the
cluster
function from phenograph:Several intermediate files are written in the current working directory:
Is it possible to direct phenograph to write these files in a tmp directory? For the purposes of the application, it is not desirable to have the tmp files written where the application source code is hosted.
The text was updated successfully, but these errors were encountered: