Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

matplotlib has trouble #24

Open
RijndertAriese opened this issue Sep 9, 2024 · 0 comments
Open

matplotlib has trouble #24

RijndertAriese opened this issue Sep 9, 2024 · 0 comments

Comments

@RijndertAriese
Copy link

Hi,

Thanks for your amazing work!
I'm trying to integrate my timeseries experiment and all code does work out. However, once I want to plot using matplotlib it gives me this

font family ['Bitstream Vera Sans'] not found. Falling back to DejaVu Sans

It tried resetting my font by plt.rcParams['font.family'] = 'sans-serif', and while this removed the error it just didn't give any output. No plot and no text/information.

This is happening using both the integrated scanpy function as well as using the Harmony package itself. I noticed that when I just loaded scanpy and did not run the sc.external.tl.harmony_timeseries() yet, the umaps show just fine. As soon as I run the command I have this behaviour. However, when I do import Harmony from the start, the plots don't show.

Hope you can help me here!

Cheers,
Rijndert

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

1 participant