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pom.xml
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<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
<modelVersion>4.0.0</modelVersion>
<properties>
<bundle.symbolicName>org.cytoscape.rest.cy-rest</bundle.symbolicName>
<bundle.namespace>org.cytoscape.rest</bundle.namespace>
<maven-compiler-plugin.version>3.5.1</maven-compiler-plugin.version>
<maven-bundle-plugin.version>3.2.0</maven-bundle-plugin.version>
<osgi.api.version>4.2.0</osgi.api.version>
<junit.version>4.12</junit.version>
<jersey.version>2.23</jersey.version>
<rest.api.version>v1</rest.api.version>
<project.build.sourceEncoding>UTF-8</project.build.sourceEncoding>
<cytoscape.api.version>3.3.0</cytoscape.api.version>
</properties>
<groupId>org.cytoscape</groupId>
<artifactId>cy-rest</artifactId>
<version>3.3.8-SNAPSHOT</version>
<packaging>bundle</packaging>
<name>cyREST</name>
<repositories>
<repository>
<id>cytoscape_releases</id>
<snapshots>
<enabled>false</enabled>
</snapshots>
<releases>
<enabled>true</enabled>
</releases>
<name>Cytoscape Releases</name>
<url>http://code.cytoscape.org/nexus/content/repositories/releases/</url>
</repository>
<repository>
<id>cytoscape_snapshots</id>
<snapshots>
<enabled>true</enabled>
</snapshots>
<releases>
<enabled>false</enabled>
</releases>
<name>Cytoscape Snapshots</name>
<url>http://code.cytoscape.org/nexus/content/repositories/snapshots/</url>
</repository>
<!-- For API document generation -->
<repository>
<id>miredot</id>
<name>MireDot Releases</name>
<url>http://nexus.qmino.com/content/repositories/miredot</url>
</repository>
</repositories>
<distributionManagement>
<repository>
<id>releases</id>
<name>Internal Releases</name>
<url>http://code.cytoscape.org/nexus/content/repositories/releases</url>
</repository>
<snapshotRepository>
<id>snapshots</id>
<name>Internal Snapshots</name>
<url>http://code.cytoscape.org/nexus/content/repositories/snapshots</url>
</snapshotRepository>
</distributionManagement>
<pluginRepositories>
<pluginRepository>
<id>miredot</id>
<name>MireDot Releases</name>
<url>http://nexus.qmino.com/content/repositories/miredot</url>
</pluginRepository>
</pluginRepositories>
<!-- SCM Information. Currently hosted at GitHub. -->
<scm>
<connection>scm:https://github.com/cytoscape/cyREST.git</connection>
<developerConnection>scm:[email protected]:cytoscape/cyREST.git</developerConnection>
</scm>
<build>
<plugins>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-compiler-plugin</artifactId>
<version>${maven-compiler-plugin.version}</version>
<extensions>true</extensions>
<configuration>
<source>1.8</source>
<target>1.8</target>
<encoding>UTF-8</encoding>
<optimize>true</optimize>
<showWarnings>true</showWarnings>
<showDeprecation>true</showDeprecation>
<compilerArguments>
<Xmaxwarns>10000</Xmaxwarns>
<Xmaxerrs>10000</Xmaxerrs>
</compilerArguments>
</configuration>
</plugin>
<plugin>
<groupId>org.apache.felix</groupId>
<artifactId>maven-bundle-plugin</artifactId>
<version>${maven-bundle-plugin.version}</version>
<extensions>true</extensions>
<configuration>
<instructions>
<Bundle-SymbolicName>${bundle.symbolicName}</Bundle-SymbolicName>
<Bundle-Version>${project.version}</Bundle-Version>
<Private-Package>org.cytoscape.io.internal.*,${bundle.namespace}.internal.*</Private-Package>
<Bundle-Activator>${bundle.namespace}.internal.CyActivator</Bundle-Activator>
<Embed-Dependency>*;scope=!provided|test;groupId=!org.cytoscape</Embed-Dependency>
<Embed-Transitive>true</Embed-Transitive>
<Import-Package>*;resolution:=optional</Import-Package>
</instructions>
</configuration>
</plugin>
<plugin>
<groupId>com.qmino</groupId>
<artifactId>miredot-plugin</artifactId>
<version>1.6.2</version>
<executions>
<execution>
<goals>
<goal>restdoc</goal>
</goals>
</execution>
</executions>
<configuration>
<licence>
UHJvamVjdHxvcmcuY3l0b3NjYXBlLmN5LXJlc3R8MjAxOS0wOC0xMnx0cnVlI01Dd0NGQzZwaksydUc5QlJ5TFFMczlWQjJmOWRLNytKQWhRVWU5U3NqaHRXK3B6WW5kQjd5VUZBWGc1R0VnPT0=
</licence>
<!-- insert other configuration here (optional) -->
<output>
<title>RESTful API for Cytoscape ${rest.api.version}</title>
</output>
<restModel>
<httpStatusCodes>
<httpStatusCode>
<httpCode>200</httpCode>
<document>always</document>
<defaultMessage>The service call has completed successfully.</defaultMessage>
</httpStatusCode>
<httpStatusCode>
<httpCode>201</httpCode>
<document>post</document>
<defaultMessage>The service call has created a new object.</defaultMessage>
</httpStatusCode>
<httpStatusCode>
<httpCode>412</httpCode>
<document>put,post</document>
<defaultMessage>Invalid JSON input.</defaultMessage>
</httpStatusCode>
<httpStatusCode>
<httpCode>500</httpCode>
<document>always</document>
<defaultMessage>The API call has not succeeded.</defaultMessage>
</httpStatusCode>
<httpStatusCode>
<httpCode>404</httpCode>
<document>always</document>
<defaultMessage>The URL (or object) does not exist.</defaultMessage>
</httpStatusCode>
</httpStatusCodes>
</restModel>
</configuration>
</plugin>
<plugin>
<groupId>org.eluder.coveralls</groupId>
<artifactId>coveralls-maven-plugin</artifactId>
<version>3.1.0</version>
</plugin>
<plugin>
<groupId>org.codehaus.mojo</groupId>
<artifactId>cobertura-maven-plugin</artifactId>
<version>2.6</version>
<dependencies>
<dependency>
<groupId>org.ow2.asm</groupId>
<artifactId>asm</artifactId>
<version>5.0.3</version>
</dependency>
</dependencies>
<configuration>
<format>xml</format>
<maxmem>256m</maxmem>
<!-- aggregated reports for multi-module projects -->
<aggregate>true</aggregate>
</configuration>
</plugin>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-antrun-plugin</artifactId>
<version>1.7</version>
<executions>
<execution>
<phase>install</phase>
<configuration>
<target>
<!-- Will run build.xml in same folder -->
<ant dir="./" />
</target>
</configuration>
<goals>
<goal>run</goal>
</goals>
</execution>
</executions>
</plugin>
</plugins>
</build>
<dependencyManagement>
<dependencies>
<dependency>
<groupId>org.glassfish.jersey</groupId>
<artifactId>jersey-bom</artifactId>
<version>${jersey.version}</version>
<type>pom</type>
<scope>import</scope>
</dependency>
</dependencies>
</dependencyManagement>
<dependencies>
<!-- Cytoscape 3 Dependencies -->
<dependency>
<groupId>org.cytoscape</groupId>
<artifactId>event-api</artifactId>
<version>${cytoscape.api.version}</version>
<scope>provided</scope>
</dependency>
<dependency>
<groupId>org.cytoscape</groupId>
<artifactId>property-api</artifactId>
<version>${cytoscape.api.version}</version>
<scope>provided</scope>
</dependency>
<dependency>
<groupId>org.cytoscape</groupId>
<artifactId>io-api</artifactId>
<version>${cytoscape.api.version}</version>
<scope>provided</scope>
</dependency>
<dependency>
<groupId>org.cytoscape</groupId>
<artifactId>swing-application-api</artifactId>
<version>${cytoscape.api.version}</version>
<scope>provided</scope>
</dependency>
<dependency>
<groupId>org.cytoscape</groupId>
<artifactId>layout-api</artifactId>
<version>${cytoscape.api.version}</version>
<scope>provided</scope>
</dependency>
<dependency>
<groupId>org.cytoscape</groupId>
<artifactId>core-task-api</artifactId>
<version>${cytoscape.api.version}</version>
<scope>provided</scope>
</dependency>
<dependency>
<groupId>org.cytoscape</groupId>
<artifactId>work-api</artifactId>
<version>${cytoscape.api.version}</version>
<scope>provided</scope>
</dependency>
<dependency>
<groupId>org.cytoscape</groupId>
<artifactId>service-api</artifactId>
<version>${cytoscape.api.version}</version>
<scope>provided</scope>
</dependency>
<dependency>
<groupId>org.cytoscape</groupId>
<artifactId>group-api</artifactId>
<version>${cytoscape.api.version}</version>
<scope>provided</scope>
</dependency>
<dependency>
<groupId>org.cytoscape</groupId>
<artifactId>vizmap-api</artifactId>
<version>${cytoscape.api.version}</version>
<scope>provided</scope>
</dependency>
<dependency>
<groupId>org.cytoscape</groupId>
<artifactId>command-executor-api</artifactId>
<version>${cytoscape.api.version}</version>
<scope>provided</scope>
</dependency>
<!-- OSGi core dependency -->
<dependency>
<groupId>org.osgi</groupId>
<artifactId>org.osgi.core</artifactId>
<version>${osgi.api.version}</version>
<scope>provided</scope>
</dependency>
<dependency>
<groupId>org.osgi</groupId>
<artifactId>org.osgi.compendium</artifactId>
<version>${osgi.api.version}</version>
<scope>provided</scope>
</dependency>
<!-- 3rd party libraries -->
<dependency>
<groupId>com.fasterxml.jackson.core</groupId>
<artifactId>jackson-databind</artifactId>
<version>2.7.4</version>
</dependency>
<!-- Jersey -->
<dependency>
<groupId>org.glassfish.jersey.containers</groupId>
<artifactId>jersey-container-grizzly2-http</artifactId>
</dependency>
<dependency>
<groupId>org.glassfish.jersey.media</groupId>
<artifactId>jersey-media-json-jackson</artifactId>
</dependency>
<dependency>
<groupId>org.ops4j.pax.logging</groupId>
<artifactId>pax-logging-api</artifactId>
<version>1.5.3</version>
<scope>provided</scope>
</dependency>
<dependency>
<groupId>org.ops4j.pax.logging</groupId>
<artifactId>pax-logging-service</artifactId>
<version>1.5.3</version>
<scope>provided</scope>
</dependency>
<!-- Testing -->
<dependency>
<groupId>junit</groupId>
<artifactId>junit</artifactId>
<version>${junit.version}</version>
<scope>test</scope>
</dependency>
<dependency>
<groupId>org.mockito</groupId>
<artifactId>mockito-all</artifactId>
<version>1.10.19</version>
<scope>test</scope>
</dependency>
<dependency>
<groupId>org.cytoscape</groupId>
<artifactId>model-impl</artifactId>
<version>${cytoscape.api.version}</version>
<type>test-jar</type>
<scope>test</scope>
</dependency>
<dependency>
<groupId>org.cytoscape</groupId>
<artifactId>model-impl</artifactId>
<version>${cytoscape.api.version}</version>
<scope>test</scope>
</dependency>
<dependency>
<groupId>org.cytoscape</groupId>
<artifactId>event-api</artifactId>
<version>${cytoscape.api.version}</version>
<type>test-jar</type>
<scope>test</scope>
</dependency>
<dependency>
<groupId>org.cytoscape</groupId>
<artifactId>viewmodel-impl</artifactId>
<version>${cytoscape.api.version}</version>
<scope>test</scope>
</dependency>
<dependency>
<groupId>org.cytoscape</groupId>
<artifactId>viewmodel-impl</artifactId>
<version>${cytoscape.api.version}</version>
<type>test-jar</type>
<scope>test</scope>
</dependency>
<dependency>
<groupId>org.cytoscape</groupId>
<artifactId>vizmap-impl</artifactId>
<version>${cytoscape.api.version}</version>
<scope>test</scope>
</dependency>
<dependency>
<groupId>org.cytoscape</groupId>
<artifactId>ding-presentation-impl</artifactId>
<version>${cytoscape.api.version}</version>
<type>test-jar</type>
<scope>test</scope>
</dependency>
<dependency>
<groupId>org.cytoscape</groupId>
<artifactId>ding-presentation-impl</artifactId>
<version>${cytoscape.api.version}</version>
<scope>test</scope>
</dependency>
<dependency>
<groupId>org.glassfish.jersey.test-framework.providers</groupId>
<artifactId>jersey-test-framework-provider-grizzly2</artifactId>
<scope>test</scope>
</dependency>
<dependency>
<groupId>org.glassfish.jersey.test-framework</groupId>
<artifactId>jersey-test-framework-core</artifactId>
<scope>test</scope>
</dependency>
<dependency>
<groupId>com.qmino</groupId>
<artifactId>miredot-annotations</artifactId>
<version>1.3.1</version>
</dependency>
</dependencies>
</project>