macOS M1 compiling error

[jianshu93]

Hello Team,

I have compiling error on my M1 MacBook Pro:

warning: unused variable: i
--> src/me.rs:41:14
|
41 | for (i, count) in self.quartet_pattern_counts.iter().enumerate() {
| ^ help: if this is intentional, prefix it with an underscore: _i
|
= note: #[warn(unused_variables)] on by default

warning: value assigned to target_read_seq is never read
--> src/tag.rs:180:17
|
180 | let mut target_read_seq = String::new();
| ^^^^^^^^^^^^^^^
|
= help: maybe it is overwritten before being read?
= note: #[warn(unused_assignments)] on by default

warning: value assigned to target_ref_seq is never read
--> src/tag.rs:181:17
|
181 | let mut target_ref_seq = String::new();
| ^^^^^^^^^^^^^^
|
= help: maybe it is overwritten before being read?

error: linking with cc failed: exit status: 1
|
= note: LC_ALL="C" PATH="/Users/jianshuzhao/.rustup/toolchains/nightly-aarch64-apple-darwin/lib/rustlib/aarch64-apple-darwin/bin:/Users/jianshuzhao/miniconda3/condabin:/Users/jianshuzhao/Github/bowtie2-2.5.0-macos-arm64:/opt/homebrew/bin:/Users/jianshuzhao/bin:/opt/homebrew/opt/bzip2/bin:/Users/jianshuzhao/Github/mummer-4.0.0beta5/bin:/Users/jianshuzhao/go/bin:/Users/jianshuzhao/Github/hmmer-h3-arm/bin:/opt/homebrew/opt/llvm/bin:/opt/homebrew/opt/openjdk/bin:/opt/homebrew/Cellar/coreutils/9.1/bin:/opt/homebrew/opt/ruby/bin:/opt/homebrew/bin:/opt/homebrew/sbin:/Users/jianshuzhao/.cargo/bin:/usr/local/bin:/System/Cryptexes/App/usr/bin:/usr/bin:/bin:/usr/sbin:/sbin:/Library/TeX/texbin:/usr/local/go/bin:/opt/X11/bin:/var/run/com.apple.security.cryptexd/codex.system/bootstrap/usr/local/bin:/var/run/com.apple.security.cryptexd/codex.system/bootstrap/usr/bin:/var/run/com.apple.security.cryptexd/codex.system/bootstrap/usr/appleinternal/bin" VSLANG="1033" ZERO_AR_DATE="1" "cc" "-arch" "arm64" 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= note: Undefined symbols for architecture arm64:
"___emutls_get_address", referenced from:
_crc32 in liblibz_sys-977e0389b85adc1b.rlib(crc32_braid.c.o)
_lm_set_level in liblibz_sys-977e0389b85adc1b.rlib(deflate.c.o)
_deflateResetKeep in liblibz_sys-977e0389b85adc1b.rlib(deflate.c.o)
_deflate in liblibz_sys-977e0389b85adc1b.rlib(deflate.c.o)
_read_buf in liblibz_sys-977e0389b85adc1b.rlib(deflate.c.o)
_fill_window in liblibz_sys-977e0389b85adc1b.rlib(deflate.c.o)
inflateInit2 in liblibz_sys-977e0389b85adc1b.rlib(inflate.c.o)
...
ld: symbol(s) not found for architecture arm64
collect2: error: ld returned 1 exit status

warning: metheor (bin "metheor") generated 3 warnings
error: could not compile metheor (bin "metheor") due to previous error; 3 warnings emitted

Any idea why, it seems no problems on x86 linux.

Thanks,

Jianshu

[dohlee]

Hi! Could you please give me more details about the command used for compilation?

Also it would be great to know your current environment for Rust development. Could you share the results from rustc --version and cargo --version?

Best,
Dohoon