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Allele-Specifc Expression on scRNA-seq dataset #2

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singcell opened this issue Apr 30, 2024 · 0 comments
Open

Allele-Specifc Expression on scRNA-seq dataset #2

singcell opened this issue Apr 30, 2024 · 0 comments

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@singcell
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Thank you for developing this nice tool.
I have scRNA-seq data from tissues generated by crossing two distinct mouse strain. I know the SNVs present in parent genomes. I wanted to determine Allele-Specifc Expression within my scRNA-seq dataset. What would be the best way to perform this analysis? Do you have any pipeline developed for this purpose?

Thank you

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