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datastats_by_case.yaml
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stats_summary:
image_stats:
shape:
max: [768, 768, 162]
mean: [522.7777777777778, 522.3333333333334, 84.01388888888889]
median: [512.0, 512.0, 75.0]
min: [512, 480, 57]
stdev: [34.50371245010465, 34.84409722049221, 23.186737741622157]
percentile:
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- [512, 512, 65]
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- [676, 676, 156]
percentile_00_5: [512, 480, 57]
percentile_10_0: [512, 512, 65]
percentile_90_0: [528, 528, 123]
percentile_99_5: [676, 676, 156]
channels:
max: 1
mean: 1.0
median: 1.0
min: 1
stdev: 0.0
percentile: [1, 1, 1, 1]
percentile_00_5: 1
percentile_10_0: 1
percentile_90_0: 1
percentile_99_5: 1
cropped_shape:
max: [768, 629, 162]
mean: [522.7777777777778, 473.4513888888889, 84.01388888888889]
median: [512.0, 511.0, 75.0]
min: [512, 267, 57]
stdev: [34.50371245010465, 91.218208302119, 23.186737741622157]
percentile:
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percentile_00_5: [512, 269, 57]
percentile_10_0: [512, 272, 65]
percentile_90_0: [528, 512, 123]
percentile_99_5: [676, 628, 156]
spacing:
max: [0.9848484995722021, 0.9848484992980957, 2.5000000006958083]
mean: [0.5790364606116608, 0.5790364605685075, 1.8333329111905903]
median: [0.5, 0.5, 2.0]
min: [0.4000000059604645, 0.4000000059604645, 1.0]
stdev: [0.1794379919860362, 0.17943799189782303, 0.34500473850036223]
percentile:
- [0.4000000059604645, 0.4000000059604645, 1.0]
- [0.5, 0.5, 1.1999970677854643]
- [0.9848484995722021, 0.9848484992980957, 2.0]
- [0.9848484995722021, 0.9848484992980957, 2.1425000001983037]
percentile_00_5: [0.4000000059604645, 0.4000000059604645, 1.0]
percentile_10_0: [0.5, 0.5, 1.1999970677854643]
percentile_90_0: [0.9848484995722021, 0.9848484992980957, 2.0]
percentile_99_5: [0.9848484995722021, 0.9848484992980957, 2.1425000001983037]
sizemm:
max: [520.0000077741228, 520.0000076293945, 182.0]
mean: [303.83333452259274, 303.6111122767131, 146.60689560841553]
median: [256.0, 256.0, 148.0]
min: [256.0, 240.0, 114.0]
stdev: [101.4887810556913, 101.61071844455542, 14.228414649005588]
percentile:
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percentile_00_5: [256.0, 240.0, 114.0]
percentile_10_0: [256.0, 256.0, 130.0]
percentile_90_0: [520.0000077741228, 520.0000076293945, 164.81987950440205]
percentile_99_5: [520.0000077741228, 520.0000076293945, 180.57]
intensity: {max: 9887.296875, mean: 54.805084851053024, median: 8.9531203409036,
min: 0.0, stdev: 112.68346726894379, percentile_00_5: 0.0, percentile_10_0: 1.5833333333333333,
percentile_90_0: 181.6334507200453, percentile_99_5: 610.8703787061903}
image_foreground_stats:
intensity: {max: 4865.45947265625, mean: 317.714366780387, median: 306.6715244717068,
min: 0.0, stdev: 92.76935506529279, percentile_00_5: 110.79653445879619, percentile_10_0: 213.27440728081598,
percentile_90_0: 435.2069566514757, percentile_99_5: 613.4528028700087}
label_stats:
labels: [0, 1, 2]
image_intensity: {max: 4865.45947265625, mean: 317.714366780387, median: 306.6715244717068,
min: 0.0, stdev: 92.76935506529279, percentile_00_5: 110.79653445879619, percentile_10_0: 213.27440728081598,
percentile_90_0: 435.2069566514757, percentile_99_5: 613.4528028700087}
label:
- foreground_percentage:
max: 0.9999024271965027
mean: 0.9979337424867682
median: 0.9984026253223419
min: 0.9879958033561707
stdev: 0.001766446342155151
percentile: [0.9910001966357231, 0.995915699005127, 0.999671870470047, 0.9998818430304527]
percentile_00_5: 0.9910001966357231
percentile_10_0: 0.995915699005127
percentile_90_0: 0.999671870470047
percentile_99_5: 0.9998818430304527
image_intensity: {max: 9887.296875, mean: 44.455886436833275, median: 8.819432576497396,
min: 0.0, stdev: 96.2125022676256, percentile_00_5: 0.0, percentile_10_0: 1.5486111111111112,
percentile_90_0: 130.18541948662863, percentile_99_5: 559.4254565768772}
- foreground_percentage:
max: 0.006873027887195349
mean: 0.0011564522836111893
median: 0.0007289121858775616
min: 5.999506356602069e-06
stdev: 0.0011499275598215383
percentile: [1.8216561670669762e-05, 0.00020010708831250668, 0.0029147956520319007,
0.005715077985078091]
percentile_00_5: 1.8216561670669762e-05
percentile_10_0: 0.00020010708831250668
percentile_90_0: 0.0029147956520319007
percentile_99_5: 0.005715077985078091
image_intensity: {max: 3636.937744140625, mean: 291.1533488962385, median: 290.92489581637915,
min: 0.0, stdev: 59.86769488785002, percentile_00_5: 132.16158888075086, percentile_10_0: 217.85298347473145,
percentile_90_0: 362.82421663072375, percentile_99_5: 472.7342457241482}
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max: 0.008185326121747494
mean: 0.0011910210120153022
median: 0.0008218472939915955
min: 3.5953522456111386e-05
stdev: 0.001260964894777022
percentile: [4.888158873654902e-05, 0.00013539348874473943, 0.002798887132667006,
0.006468527519609774]
percentile_00_5: 4.888158873654902e-05
percentile_10_0: 0.00013539348874473943
percentile_90_0: 0.002798887132667006
percentile_99_5: 0.006468527519609774
image_intensity: {max: 4865.45947265625, mean: 338.68000547235664, median: 332.98826515891335,
min: 0.0, stdev: 112.58991780714555, percentile_00_5: 91.84613950902765, percentile_10_0: 202.69935933893376,
percentile_90_0: 483.1368041992188, percentile_99_5: 654.8763211337002}
n_cases: 144
stats_by_cases:
- image_filepath: /media/dlabella29/Extreme Pro/HNImageTrLabelTr/imagesTr_HN_preRT/2_preRT_T2.nii.gz
label_filepath: /media/dlabella29/Extreme Pro/HNImageTrLabelTr/labelsTr_HN_preRT/2_preRT_mask.nii.gz
image_stats:
shape:
- [512, 512, 83]
channels: 1
cropped_shape:
- [512, 510, 83]
spacing: [0.5, 0.5, 2.0]
sizemm: [256.0, 256.0, 166.0]
intensity:
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mean: 32.94676208496094
median: 10.0
min: 0.0
stdev: 50.894256591796875
percentile: [0.0, 2.0, 111.0, 241.0]
percentile_00_5: 0.0
percentile_10_0: 2.0
percentile_90_0: 111.0
percentile_99_5: 241.0
image_foreground_stats:
intensity:
- max: 284.0
mean: 131.47964477539062
median: 128.0
min: 23.0
stdev: 34.10021209716797
percentile: [55.0, 89.0, 177.0, 227.0]
percentile_00_5: 55.0
percentile_10_0: 89.0
percentile_90_0: 177.0
percentile_99_5: 227.0
label_stats:
labels: [0, 1, 2]
image_intensity:
- max: 284.0
mean: 131.47964477539062
median: 128.0
min: 23.0
stdev: 34.10021209716797
percentile: [55.0, 89.0, 177.0, 227.0]
percentile_00_5: 55.0
percentile_10_0: 89.0
percentile_90_0: 177.0
percentile_99_5: 227.0
label:
- image_intensity:
- max: 407.0
mean: 32.68987274169922
median: 10.0
min: 0.0
stdev: 50.72981643676758
percentile: [0.0, 2.0, 110.0, 241.0]
percentile_00_5: 0.0
percentile_10_0: 2.0
percentile_90_0: 110.0
percentile_99_5: 241.0
foreground_percentage: 0.9987024664878845
- image_intensity:
- max: 187.0
mean: 104.59352111816406
median: 105.0
min: 30.0
stdev: 20.59701156616211
percentile: [48.0, 78.0, 130.0, 152.0]
percentile_00_5: 48.0
percentile_10_0: 78.0
percentile_90_0: 130.0
percentile_99_5: 152.0
foreground_percentage: 0.00035899519571103156
- image_intensity:
- max: 284.0
mean: 141.76304626464844
median: 140.0
min: 23.0
stdev: 32.60506057739258
percentile: [63.0, 102.0, 183.0, 232.0]
percentile_00_5: 63.0
percentile_10_0: 102.0
percentile_90_0: 183.0
percentile_99_5: 232.0
foreground_percentage: 0.0009385993471369147
- image_filepath: /media/dlabella29/Extreme Pro/HNImageTrLabelTr/imagesTr_HN_preRT/3_preRT_T2.nii.gz
label_filepath: /media/dlabella29/Extreme Pro/HNImageTrLabelTr/labelsTr_HN_preRT/3_preRT_mask.nii.gz
image_stats:
shape:
- [512, 512, 77]
channels: 1
cropped_shape:
- [512, 512, 77]
spacing: [0.5, 0.5, 2.0]
sizemm: [256.0, 256.0, 154.0]
intensity:
- max: 373.0
mean: 44.25783920288086
median: 11.0
min: 0.0
stdev: 59.7170524597168
percentile: [0.0, 2.0, 144.0, 241.0]
percentile_00_5: 0.0
percentile_10_0: 2.0
percentile_90_0: 144.0
percentile_99_5: 241.0
image_foreground_stats:
intensity:
- max: 367.0
mean: 141.79998779296875
median: 124.0
min: 10.0
stdev: 50.212181091308594
percentile: [68.18499755859375, 97.0, 217.0, 315.0]
percentile_00_5: 68.18499755859375
percentile_10_0: 97.0
percentile_90_0: 217.0
percentile_99_5: 315.0
label_stats:
labels: [0, 1, 2]
image_intensity:
- max: 367.0
mean: 141.79998779296875
median: 124.0
min: 10.0
stdev: 50.212181091308594
percentile: [68.18499755859375, 97.0, 217.0, 315.0]
percentile_00_5: 68.18499755859375
percentile_10_0: 97.0
percentile_90_0: 217.0
percentile_99_5: 315.0
label:
- image_intensity:
- max: 373.0
mean: 43.9775390625
median: 11.0
min: 0.0
stdev: 59.51226043701172
percentile: [0.0, 2.0, 143.0, 240.0]
percentile_00_5: 0.0
percentile_10_0: 2.0
percentile_90_0: 143.0
percentile_99_5: 240.0
foreground_percentage: 0.9971346259117126
- image_intensity:
- max: 283.0
mean: 118.87344360351562
median: 117.0
min: 38.0
stdev: 22.14251136779785
percentile: [68.0, 94.0, 145.0, 200.9453125]
percentile_00_5: 68.0
percentile_10_0: 94.0
percentile_90_0: 145.0
percentile_99_5: 200.9453125
foreground_percentage: 0.002051613526418805
- image_intensity:
- max: 367.0
mean: 199.60069274902344
median: 195.0
min: 10.0
stdev: 54.54821014404297
percentile: [74.0, 131.0, 277.0, 330.0]
percentile_00_5: 74.0
percentile_10_0: 131.0
percentile_90_0: 277.0
percentile_99_5: 330.0
foreground_percentage: 0.0008137690601870418
- image_filepath: /media/dlabella29/Extreme Pro/HNImageTrLabelTr/imagesTr_HN_preRT/4_preRT_T2.nii.gz
label_filepath: /media/dlabella29/Extreme Pro/HNImageTrLabelTr/labelsTr_HN_preRT/4_preRT_mask.nii.gz
image_stats:
shape:
- [512, 512, 74]
channels: 1
cropped_shape:
- [512, 510, 74]
spacing: [0.5, 0.5, 2.0]
sizemm: [256.0, 256.0, 148.0]
intensity:
- max: 447.0
mean: 46.87870407104492
median: 12.0
min: 0.0
stdev: 65.95855712890625
percentile: [0.0, 2.0, 159.0, 265.0]
percentile_00_5: 0.0
percentile_10_0: 2.0
percentile_90_0: 159.0
percentile_99_5: 265.0
image_foreground_stats:
intensity:
- max: 228.0
mean: 132.37109375
median: 133.0
min: 25.0
stdev: 22.530149459838867
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mean: 40.19646072387695
median: 10.0
min: 0.0
stdev: 61.65407180786133
percentile: [0.0, 2.0, 141.0, 265.0]
percentile_00_5: 0.0
percentile_10_0: 2.0
percentile_90_0: 141.0
percentile_99_5: 265.0
foreground_percentage: 0.9978483319282532
- image_intensity:
- max: 227.0
mean: 116.55165100097656