_pkgdown.yml

destination: docs
reference:
  - title: "FlowJo Workspaces"
    desc: >
      Methods for converting between FlowJo workspaces and
      cytoverse `GatingSet` objects
    contents:
      - flowjo_workspace-class
      - open_flowjo_xml
      - flowjo_to_gatingset
      - gatingset_to_flowjo
      - fj_ws_get_sample_groups
      - fj_ws_get_samples
      - fj_ws_get_keywords
  - title: "Diva Workspaces"
    desc: >
      Methods for converting between BD FACSDiva workspaces and
      cytoverse `GatingSet` objects
    contents:
      - diva_workspace-class
      - open_diva_xml
      - diva_to_gatingset
      - diva_get_sample_groups
      - diva_get_samples
  - title: "Cytobank Experiments"
    desc: >
      Methods for converting between Cytobank experiments and
      cytoverse `GatingSet` objects
    contents:
      - open_cytobank_experiment
      - cytobank_to_gatingset
      - gatingset_to_cytobank
      - ce_get_samples
      - ce_get_compensations
      - ce_get_transformations