From 8912e95de049cb580c356cc9dea985fa57a77175 Mon Sep 17 00:00:00 2001 From: github-actions-bot Date: Thu, 22 Aug 2024 13:30:56 +0000 Subject: [PATCH] Update docs [skip ci] --- .buildinfo | 2 +- coverage/badge.svg | 4 +-- coverage/d_271e390af77d1723___init___py.html | 2 +- coverage/d_271e390af77d1723_constants_py.html | 2 +- .../d_271e390af77d1723_debris_fitters_py.html | 2 +- coverage/d_271e390af77d1723_filter_py.html | 2 +- coverage/d_271e390af77d1723_fit_py.html | 2 +- coverage/d_271e390af77d1723_geometry_py.html | 2 +- coverage/d_271e390af77d1723_hankel_py.html | 2 +- coverage/d_271e390af77d1723_io_py.html | 2 +- coverage/d_271e390af77d1723_make_figs_py.html | 2 +- coverage/d_271e390af77d1723_minimizer_py.html | 30 +++++++++---------- coverage/d_271e390af77d1723_plot_py.html | 2 +- .../d_271e390af77d1723_radial_fitters_py.html | 2 +- ...71e390af77d1723_statistical_models_py.html | 2 +- coverage/d_271e390af77d1723_tests_py.html | 2 +- coverage/d_271e390af77d1723_utilities_py.html | 2 +- coverage/index.html | 12 ++++---- coverage/status.json | 2 +- genindex.html | 14 +++++---- index.html | 16 +++++----- install.html | 16 +++++----- py_API.html | 16 +++++----- quickstart.html | 16 +++++----- search.html | 14 +++++---- tutorials.html | 16 +++++----- tutorials/fit_convergence.html | 16 +++++----- tutorials/fitting_procedure.html | 18 ++++++----- tutorials/lognormal_fit.html | 18 ++++++----- tutorials/mock_data.html | 18 ++++++----- tutorials/model_limitations.html | 16 +++++----- tutorials/mstable_to_uvtable.html | 16 +++++----- tutorials/prior_sensitivity.html | 16 +++++----- 33 files changed, 166 insertions(+), 138 deletions(-) diff --git a/.buildinfo b/.buildinfo index 87157e3e..ebc640f5 100644 --- a/.buildinfo +++ b/.buildinfo @@ -1,4 +1,4 @@ # Sphinx build info version 1 # This file hashes the configuration used when building these files. When it is not found, a full rebuild will be done. -config: b59bad4c17570b1fcc96e4ad0dce2f5e +config: 6976d284ef5c4e73d12147cb7335eb12 tags: 645f666f9bcd5a90fca523b33c5a78b7 diff --git a/coverage/badge.svg b/coverage/badge.svg index 0e475438..318685c0 100644 --- a/coverage/badge.svg +++ b/coverage/badge.svg @@ -15,7 +15,7 @@ coverage coverage - 86% - 86% + 85% + 85% diff --git a/coverage/d_271e390af77d1723___init___py.html b/coverage/d_271e390af77d1723___init___py.html index bc442461..a255a4b1 100644 --- a/coverage/d_271e390af77d1723___init___py.html +++ b/coverage/d_271e390af77d1723___init___py.html @@ -112,7 +112,7 @@

« index     coverage.py v6.2, - created at 2023-11-03 12:52 +0000 + created at 2024-08-22 13:30 +0000

diff --git a/coverage/d_271e390af77d1723_constants_py.html b/coverage/d_271e390af77d1723_constants_py.html index ada0e501..5dfe7dd4 100644 --- a/coverage/d_271e390af77d1723_constants_py.html +++ b/coverage/d_271e390af77d1723_constants_py.html @@ -87,7 +87,7 @@

« index     coverage.py v6.2, - created at 2023-11-03 12:52 +0000 + created at 2024-08-22 13:30 +0000

diff --git a/coverage/d_271e390af77d1723_debris_fitters_py.html b/coverage/d_271e390af77d1723_debris_fitters_py.html index b81517de..1868b201 100644 --- a/coverage/d_271e390af77d1723_debris_fitters_py.html +++ b/coverage/d_271e390af77d1723_debris_fitters_py.html @@ -218,7 +218,7 @@

« index     coverage.py v6.2, - created at 2023-11-03 12:52 +0000 + created at 2024-08-22 13:30 +0000

diff --git a/coverage/d_271e390af77d1723_filter_py.html b/coverage/d_271e390af77d1723_filter_py.html index 61d676e6..bc1ae94e 100644 --- a/coverage/d_271e390af77d1723_filter_py.html +++ b/coverage/d_271e390af77d1723_filter_py.html @@ -325,7 +325,7 @@

« index     coverage.py v6.2, - created at 2023-11-03 12:52 +0000 + created at 2024-08-22 13:30 +0000

diff --git a/coverage/d_271e390af77d1723_fit_py.html b/coverage/d_271e390af77d1723_fit_py.html index 55601498..f1f4427b 100644 --- a/coverage/d_271e390af77d1723_fit_py.html +++ b/coverage/d_271e390af77d1723_fit_py.html @@ -915,7 +915,7 @@

« index     coverage.py v6.2, - created at 2023-11-03 12:52 +0000 + created at 2024-08-22 13:30 +0000

diff --git a/coverage/d_271e390af77d1723_geometry_py.html b/coverage/d_271e390af77d1723_geometry_py.html index 8381050a..98cba490 100644 --- a/coverage/d_271e390af77d1723_geometry_py.html +++ b/coverage/d_271e390af77d1723_geometry_py.html @@ -825,7 +825,7 @@

« index     coverage.py v6.2, - created at 2023-11-03 12:52 +0000 + created at 2024-08-22 13:30 +0000

diff --git a/coverage/d_271e390af77d1723_hankel_py.html b/coverage/d_271e390af77d1723_hankel_py.html index ede7abef..ce65aabc 100644 --- a/coverage/d_271e390af77d1723_hankel_py.html +++ b/coverage/d_271e390af77d1723_hankel_py.html @@ -356,7 +356,7 @@

« index     coverage.py v6.2, - created at 2023-11-03 12:52 +0000 + created at 2024-08-22 13:30 +0000

diff --git a/coverage/d_271e390af77d1723_io_py.html b/coverage/d_271e390af77d1723_io_py.html index d09af8d0..6f086636 100644 --- a/coverage/d_271e390af77d1723_io_py.html +++ b/coverage/d_271e390af77d1723_io_py.html @@ -280,7 +280,7 @@

« index     coverage.py v6.2, - created at 2023-11-03 12:52 +0000 + created at 2024-08-22 13:30 +0000

diff --git a/coverage/d_271e390af77d1723_make_figs_py.html b/coverage/d_271e390af77d1723_make_figs_py.html index 163f985e..efad8854 100644 --- a/coverage/d_271e390af77d1723_make_figs_py.html +++ b/coverage/d_271e390af77d1723_make_figs_py.html @@ -1262,7 +1262,7 @@

« index     coverage.py v6.2, - created at 2023-11-03 12:52 +0000 + created at 2024-08-22 13:30 +0000

diff --git a/coverage/d_271e390af77d1723_minimizer_py.html b/coverage/d_271e390af77d1723_minimizer_py.html index 4212251a..f759d3d5 100644 --- a/coverage/d_271e390af77d1723_minimizer_py.html +++ b/coverage/d_271e390af77d1723_minimizer_py.html @@ -3,7 +3,7 @@ - Coverage for frank/minimizer.py: 84% + Coverage for frank/minimizer.py: 75% @@ -13,7 +13,7 @@

Coverage for frank/minimizer.py: - 84% + 75%

@@ -44,8 +44,8 @@

103 statements   - - + +

@@ -198,7 +198,7 @@

139 

140 x_new = x0 + lam*p 

141 if np.all(x_new == x0): 

-

142 return x0, f0, nfev, True 

+

142 return x0, f0, nfev, True 

143 

144 f_new, cost_new = eval(x_new) 

145 nfev += 1 

@@ -314,20 +314,20 @@

255 

256 # Try again once more with a different back tracking algorithm  

257 if failed_descent: 

-

258 dx = line_search.reduce_step(-jx, x) 

-

259 alpha = 2**-4 

-

260 for _ in range(10): 

-

261 xn = x + dx 

-

262 fn = fun(xn) 

-

263 nfev += 1 

-

264 if fn < fx: 

+

258 dx = line_search.reduce_step(-jx, x) 

+

259 alpha = 2**-4 

+

260 for _ in range(10): 

+

261 xn = x + dx 

+

262 fn = fun(xn) 

+

263 nfev += 1 

+

264 if fn < fx: 

265 break 

266 else: 

-

267 dx *= alpha 

+

267 dx *= alpha 

268 else: 

269 # Neither gradient descent nor Newton's method can improve 

270 # the solution 

-

271 return x, (1, nstep, nfev, nhess) 

+

271 return x, (1, nstep, nfev, nhess) 

272 

273 fx = fn 

274 x = xn 

@@ -346,7 +346,7 @@

« index     coverage.py v6.2, - created at 2023-11-03 12:52 +0000 + created at 2024-08-22 13:30 +0000

diff --git a/coverage/d_271e390af77d1723_plot_py.html b/coverage/d_271e390af77d1723_plot_py.html index 4beb2037..400cc162 100644 --- a/coverage/d_271e390af77d1723_plot_py.html +++ b/coverage/d_271e390af77d1723_plot_py.html @@ -416,7 +416,7 @@

« index     coverage.py v6.2, - created at 2023-11-03 12:52 +0000 + created at 2024-08-22 13:30 +0000

diff --git a/coverage/d_271e390af77d1723_radial_fitters_py.html b/coverage/d_271e390af77d1723_radial_fitters_py.html index 12301e3e..7beb9ef6 100644 --- a/coverage/d_271e390af77d1723_radial_fitters_py.html +++ b/coverage/d_271e390af77d1723_radial_fitters_py.html @@ -1053,7 +1053,7 @@

« index     coverage.py v6.2, - created at 2023-11-03 12:52 +0000 + created at 2024-08-22 13:30 +0000

diff --git a/coverage/d_271e390af77d1723_statistical_models_py.html b/coverage/d_271e390af77d1723_statistical_models_py.html index 471ad381..fd66852b 100644 --- a/coverage/d_271e390af77d1723_statistical_models_py.html +++ b/coverage/d_271e390af77d1723_statistical_models_py.html @@ -1337,7 +1337,7 @@

« index     coverage.py v6.2, - created at 2023-11-03 12:52 +0000 + created at 2024-08-22 13:30 +0000

diff --git a/coverage/d_271e390af77d1723_tests_py.html b/coverage/d_271e390af77d1723_tests_py.html index 37d00d96..e0e5779a 100644 --- a/coverage/d_271e390af77d1723_tests_py.html +++ b/coverage/d_271e390af77d1723_tests_py.html @@ -897,7 +897,7 @@

« index     coverage.py v6.2, - created at 2023-11-03 12:52 +0000 + created at 2024-08-22 13:30 +0000

diff --git a/coverage/d_271e390af77d1723_utilities_py.html b/coverage/d_271e390af77d1723_utilities_py.html index f1ce9acb..b060d03f 100644 --- a/coverage/d_271e390af77d1723_utilities_py.html +++ b/coverage/d_271e390af77d1723_utilities_py.html @@ -1181,7 +1181,7 @@

« index     coverage.py v6.2, - created at 2023-11-03 12:52 +0000 + created at 2024-08-22 13:30 +0000

diff --git a/coverage/index.html b/coverage/index.html index 07ea2a4f..8ce59337 100644 --- a/coverage/index.html +++ b/coverage/index.html @@ -11,7 +11,7 @@

Coverage report: - 86% + 85%

@@ -114,9 +114,9 @@

Coverage report: frank/minimizer.py 103 - 16 + 26 0 - 84% + 75% frank/plot.py @@ -158,9 +158,9 @@

Coverage report: Total 2889 - 409 + 419 0 - 86% + 85% @@ -172,7 +172,7 @@

Coverage report:

coverage.py v6.2, - created at 2023-11-03 12:52 +0000 + created at 2024-08-22 13:30 +0000

diff --git a/coverage/status.json b/coverage/status.json index a67c8e62..fdda5adc 100644 --- a/coverage/status.json +++ b/coverage/status.json @@ -1 +1 @@ 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\ No newline at end of file diff --git a/genindex.html b/genindex.html index c4e091b1..8700a098 100644 --- a/genindex.html +++ b/genindex.html @@ -1,15 +1,17 @@ - + Index — frank 1.2.2 documentation - - - + + + + + @@ -460,8 +462,8 @@

U


-

© Copyright 2019-2023, R. Booth, J. Jennings, M. Tazzari.. - Last updated on 2023 Nov 03 at 12:51:08 UTC // Images: Universal Studios, NBCUniversal [Public domain]. +

© Copyright 2019-2024, R. Booth, J. Jennings, M. Tazzari.. + Last updated on 2024 Aug 22 at 13:29:35 UTC // Images: Universal Studios, NBCUniversal [Public domain].

diff --git a/index.html b/index.html index e8cc9eb7..25354d97 100644 --- a/index.html +++ b/index.html @@ -1,16 +1,18 @@ - + - + Documentation — frank 1.2.2 documentation - - - + + + + + @@ -171,8 +173,8 @@

Contact -

© Copyright 2019-2023, R. Booth, J. Jennings, M. Tazzari.. - Last updated on 2023 Nov 03 at 12:51:08 UTC // Images: Universal Studios, NBCUniversal [Public domain]. +

© Copyright 2019-2024, R. Booth, J. Jennings, M. Tazzari.. + Last updated on 2024 Aug 22 at 13:29:35 UTC // Images: Universal Studios, NBCUniversal [Public domain].

diff --git a/install.html b/install.html index 0dca364e..3ad242c1 100644 --- a/install.html +++ b/install.html @@ -1,16 +1,18 @@ - + - + Installation — frank 1.2.2 documentation - - - + + + + + @@ -139,8 +141,8 @@

Test the install -

© Copyright 2019-2023, R. Booth, J. Jennings, M. Tazzari.. - Last updated on 2023 Nov 03 at 12:51:08 UTC // Images: Universal Studios, NBCUniversal [Public domain]. +

© Copyright 2019-2024, R. Booth, J. Jennings, M. Tazzari.. + Last updated on 2024 Aug 22 at 13:29:35 UTC // Images: Universal Studios, NBCUniversal [Public domain].

diff --git a/py_API.html b/py_API.html index f7b868f9..951a9137 100644 --- a/py_API.html +++ b/py_API.html @@ -1,16 +1,18 @@ - + - + The Frankenstein Python API — frank 1.2.2 documentation - - - + + + + + @@ -1778,8 +1780,8 @@

Statistical analysis
-

© Copyright 2019-2023, R. Booth, J. Jennings, M. Tazzari.. - Last updated on 2023 Nov 03 at 12:51:08 UTC // Images: Universal Studios, NBCUniversal [Public domain]. +

© Copyright 2019-2024, R. Booth, J. Jennings, M. Tazzari.. + Last updated on 2024 Aug 22 at 13:29:35 UTC // Images: Universal Studios, NBCUniversal [Public domain].

diff --git a/quickstart.html b/quickstart.html index 56d0720e..ba0aa226 100644 --- a/quickstart.html +++ b/quickstart.html @@ -1,16 +1,18 @@ - + - + Performing a fit — frank 1.2.2 documentation - - - + + + + + @@ -410,8 +412,8 @@

Perform a fit using
-

© Copyright 2019-2023, R. Booth, J. Jennings, M. Tazzari.. - Last updated on 2023 Nov 03 at 12:51:08 UTC // Images: Universal Studios, NBCUniversal [Public domain]. +

© Copyright 2019-2024, R. Booth, J. Jennings, M. Tazzari.. + Last updated on 2024 Aug 22 at 13:29:35 UTC // Images: Universal Studios, NBCUniversal [Public domain].

diff --git a/search.html b/search.html index 49716281..c486784e 100644 --- a/search.html +++ b/search.html @@ -1,15 +1,17 @@ - + Search — frank 1.2.2 documentation - - - + + + + + @@ -128,8 +130,8 @@

Tutorials -

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diff --git a/tutorials/fit_convergence.html b/tutorials/fit_convergence.html index bb29519b..90d2e864 100644 --- a/tutorials/fit_convergence.html +++ b/tutorials/fit_convergence.html @@ -1,16 +1,18 @@ - + - + Testing a fit’s convergence — frank 1.2.2 documentation - - - + + + + + @@ -151,8 +153,8 @@

Testing a fit’s convergence -

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diff --git a/tutorials/fitting_procedure.html b/tutorials/fitting_procedure.html index a4f26c0a..d0c138da 100644 --- a/tutorials/fitting_procedure.html +++ b/tutorials/fitting_procedure.html @@ -1,17 +1,19 @@ - + - + What’s fit.py doing? The fitting procedure in detail — frank 1.2.2 documentation - - - - + + + + + + @@ -404,8 +406,8 @@

4. Save the results and generate plots -

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diff --git a/tutorials/lognormal_fit.html b/tutorials/lognormal_fit.html index 40aee4aa..0c3759f7 100644 --- a/tutorials/lognormal_fit.html +++ b/tutorials/lognormal_fit.html @@ -1,17 +1,19 @@ - + - + Fitting a frank model in logarithmic brightness — frank 1.2.2 documentation - - - - + + + + + + @@ -351,8 +353,8 @@

Fitting a known brightness profile with the standard and logarithmic models<
-

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diff --git a/tutorials/mock_data.html b/tutorials/mock_data.html index db80be17..0063d75e 100644 --- a/tutorials/mock_data.html +++ b/tutorials/mock_data.html @@ -1,17 +1,19 @@ - + - + Taking a Hankel transform, and generating mock data with frank — frank 1.2.2 documentation - - - - + + + + + + @@ -368,8 +370,8 @@

Fitting mock data -

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diff --git a/tutorials/model_limitations.html b/tutorials/model_limitations.html index e9f822dc..242c6f68 100644 --- a/tutorials/model_limitations.html +++ b/tutorials/model_limitations.html @@ -1,16 +1,18 @@ - + - + Examining the model’s limitations — frank 1.2.2 documentation - - - + + + + + @@ -168,8 +170,8 @@

An underestimated brightness profile uncertainty -

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diff --git a/tutorials/mstable_to_uvtable.html b/tutorials/mstable_to_uvtable.html index 47a62cef..df89c69b 100644 --- a/tutorials/mstable_to_uvtable.html +++ b/tutorials/mstable_to_uvtable.html @@ -1,16 +1,18 @@ - + - + Generating a UVTable from an MSTable for input to frank — frank 1.2.2 documentation - - - + + + + + @@ -129,8 +131,8 @@

Generating a UVTable from an MSTable for input to -

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diff --git a/tutorials/prior_sensitivity.html b/tutorials/prior_sensitivity.html index 2d580062..da06e8ae 100644 --- a/tutorials/prior_sensitivity.html +++ b/tutorials/prior_sensitivity.html @@ -1,16 +1,18 @@ - + - + Testing a fit’s sensitivity to the hyperparameters \(\alpha\) and \(w_{\rm smooth}\) — frank 1.2.2 documentation - - - + + + + + @@ -184,8 +186,8 @@

Always check a fit’s sensitivity to -

© Copyright 2019-2023, R. Booth, J. Jennings, M. Tazzari.. - Last updated on 2023 Nov 03 at 12:51:08 UTC // Images: Universal Studios, NBCUniversal [Public domain]. +

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