From 8fc7c7921ffffa59c2e5342d79f18463feb0fcc2 Mon Sep 17 00:00:00 2001 From: WardDeb Date: Wed, 17 Jan 2024 11:16:42 +0100 Subject: [PATCH] include parser fix scalefacestimation --- CHANGES.txt | 1 + deeptools/estimateScaleFactor.py | 2 +- 2 files changed, 2 insertions(+), 1 deletion(-) diff --git a/CHANGES.txt b/CHANGES.txt index 28780ef0b0..5f0bf0f0cb 100755 --- a/CHANGES.txt +++ b/CHANGES.txt @@ -6,6 +6,7 @@ * documentation changes to improve ESS tab, table constraints have been lifted & sphinx_rtd_theme to v2.0.0 * upload artifact in gh test runner pinned to 3 * Try to get the number of processors from sched_getaffinity, to avoid using to many in job submissions for example. #1199 +* Fix typo in estimateScaleFactor that fixes broken argparsing. #1286 3.5.4 * error handling and cases for bwAverage with >2 samples diff --git a/deeptools/estimateScaleFactor.py b/deeptools/estimateScaleFactor.py index 549ecf7808..97869a7bdb 100644 --- a/deeptools/estimateScaleFactor.py +++ b/deeptools/estimateScaleFactor.py @@ -98,7 +98,7 @@ def main(args=None): between to samples """ - args = parseArguments().parse_args(args) + args = parseArguments(args) if len(args.bamfiles) > 2: print("SES method to estimate scale factors only works for two samples") exit(0)