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Strange AggregatePlots with diagonal #915

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robertferr opened this issue Nov 29, 2024 · 0 comments
Open

Strange AggregatePlots with diagonal #915

robertferr opened this issue Nov 29, 2024 · 0 comments

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@robertferr
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I am using an older version of hicexplorer to be able to use the function aggregate contacts with -genome option.

What I get is a nice aggregate plot, but in all of them there is a faint diagonal plotted. What is this?

siCTRL_T0_contact_map_50000_norm_merged_200_common_genome_aggregate

command is:
hicAggregateContacts --matrix $1.h5 --BED $2.bed --outFileName $1_$2_genome_aggregate.png --numberOfBins 80 --avgType mean --vMin 0.0 --vMax 1.8 --range 500000:10000000 --transform obs/exp --genome

Thanks a lot

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