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woodFastaStdout.txt
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woodFastaStdout.txt
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java -ea -Xmx200m -cp /home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/bbmap/current/ jgi.ReformatReads in=lane1-s160-index-AAGCACTG-GTGATCCANNNN-Dc-X_S160_L001_R1_trimmed.merge.filt.fastq out=/home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/trimmed_wood/woodFasta/lane1-s160-index-AAGCACTG-GTGATCCANNNN-Dc-X_S160_L001.fasta fastawrap=0
Executing jgi.ReformatReads [in=lane1-s160-index-AAGCACTG-GTGATCCANNNN-Dc-X_S160_L001_R1_trimmed.merge.filt.fastq, out=/home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/trimmed_wood/woodFasta/lane1-s160-index-AAGCACTG-GTGATCCANNNN-Dc-X_S160_L001.fasta, fastawrap=0]
Input is being processed as unpaired
Input: 61717 reads 15788419 bases
Output: 61717 reads (100.00%) 15788419 bases (100.00%)
Time: 0.638 seconds.
Reads Processed: 61717 96.76k reads/sec
Bases Processed: 15788k 24.75m bases/sec
java -ea -Xmx200m -cp /home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/bbmap/current/ jgi.ReformatReads in=lane1-s161-index-AAGCACTG-TTCGTACGNNNN-Dc-PosG_S161_L001_R1_trimmed.merge.filt.fastq out=/home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/trimmed_wood/woodFasta/lane1-s161-index-AAGCACTG-TTCGTACGNNNN-Dc-PosG_S161_L001.fasta fastawrap=0
Executing jgi.ReformatReads [in=lane1-s161-index-AAGCACTG-TTCGTACGNNNN-Dc-PosG_S161_L001_R1_trimmed.merge.filt.fastq, out=/home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/trimmed_wood/woodFasta/lane1-s161-index-AAGCACTG-TTCGTACGNNNN-Dc-PosG_S161_L001.fasta, fastawrap=0]
Input is being processed as unpaired
Input: 44975 reads 11367722 bases
Output: 44975 reads (100.00%) 11367722 bases (100.00%)
Time: 0.582 seconds.
Reads Processed: 44975 77.23k reads/sec
Bases Processed: 11367k 19.52m bases/sec
java -ea -Xmx200m -cp /home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/bbmap/current/ jgi.ReformatReads in=lane1-s162-index-AAGCACTG-ATGACAGGNNNN-Dc-PosI_S162_L001_R1_trimmed.merge.filt.fastq out=/home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/trimmed_wood/woodFasta/lane1-s162-index-AAGCACTG-ATGACAGGNNNN-Dc-PosI_S162_L001.fasta fastawrap=0
Executing jgi.ReformatReads [in=lane1-s162-index-AAGCACTG-ATGACAGGNNNN-Dc-PosI_S162_L001_R1_trimmed.merge.filt.fastq, out=/home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/trimmed_wood/woodFasta/lane1-s162-index-AAGCACTG-ATGACAGGNNNN-Dc-PosI_S162_L001.fasta, fastawrap=0]
Input is being processed as unpaired
Input: 37462 reads 9759644 bases
Output: 37462 reads (100.00%) 9759644 bases (100.00%)
Time: 0.344 seconds.
Reads Processed: 37462 109.05k reads/sec
Bases Processed: 9759k 28.41m bases/sec
java -ea -Xmx200m -cp /home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/bbmap/current/ jgi.ReformatReads in=lane1-s163-index-AAGCACTG-CGACCTAANNNN-Dc-Neg_S163_L001_R1_trimmed.merge.filt.fastq out=/home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/trimmed_wood/woodFasta/lane1-s163-index-AAGCACTG-CGACCTAANNNN-Dc-Neg_S163_L001.fasta fastawrap=0
Executing jgi.ReformatReads [in=lane1-s163-index-AAGCACTG-CGACCTAANNNN-Dc-Neg_S163_L001_R1_trimmed.merge.filt.fastq, out=/home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/trimmed_wood/woodFasta/lane1-s163-index-AAGCACTG-CGACCTAANNNN-Dc-Neg_S163_L001.fasta, fastawrap=0]
Input is being processed as unpaired
Input: 17079 reads 4126258 bases
Output: 17079 reads (100.00%) 4126258 bases (100.00%)
Time: 0.256 seconds.
Reads Processed: 17079 66.74k reads/sec
Bases Processed: 4126k 16.12m bases/sec
java -ea -Xmx200m -cp /home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/bbmap/current/ jgi.ReformatReads in=lane1-s164-index-CTAGGTGA-GACACAGTNNNN-1w_S164_L001_R1_trimmed.merge.filt.fastq out=/home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/trimmed_wood/woodFasta/lane1-s164-index-CTAGGTGA-GACACAGTNNNN-1w_S164_L001.fasta fastawrap=0
Executing jgi.ReformatReads [in=lane1-s164-index-CTAGGTGA-GACACAGTNNNN-1w_S164_L001_R1_trimmed.merge.filt.fastq, out=/home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/trimmed_wood/woodFasta/lane1-s164-index-CTAGGTGA-GACACAGTNNNN-1w_S164_L001.fasta, fastawrap=0]
Input is being processed as unpaired
Input: 30951 reads 7473449 bases
Output: 30951 reads (100.00%) 7473449 bases (100.00%)
Time: 0.300 seconds.
Reads Processed: 30951 103.28k reads/sec
Bases Processed: 7473k 24.94m bases/sec
java -ea -Xmx200m -cp /home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/bbmap/current/ jgi.ReformatReads in=lane1-s165-index-ACGACTTG-GACACAGTNNNN-2w_S165_L001_R1_trimmed.merge.filt.fastq out=/home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/trimmed_wood/woodFasta/lane1-s165-index-ACGACTTG-GACACAGTNNNN-2w_S165_L001.fasta fastawrap=0
Executing jgi.ReformatReads [in=lane1-s165-index-ACGACTTG-GACACAGTNNNN-2w_S165_L001_R1_trimmed.merge.filt.fastq, out=/home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/trimmed_wood/woodFasta/lane1-s165-index-ACGACTTG-GACACAGTNNNN-2w_S165_L001.fasta, fastawrap=0]
Input is being processed as unpaired
Input: 44377 reads 11192488 bases
Output: 44377 reads (100.00%) 11192488 bases (100.00%)
Time: 0.356 seconds.
Reads Processed: 44377 124.67k reads/sec
Bases Processed: 11192k 31.44m bases/sec
java -ea -Xmx200m -cp /home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/bbmap/current/ jgi.ReformatReads in=lane1-s166-index-GCATACAG-GACACAGTNNNN-3w_S166_L001_R1_trimmed.merge.filt.fastq out=/home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/trimmed_wood/woodFasta/lane1-s166-index-GCATACAG-GACACAGTNNNN-3w_S166_L001.fasta fastawrap=0
Executing jgi.ReformatReads [in=lane1-s166-index-GCATACAG-GACACAGTNNNN-3w_S166_L001_R1_trimmed.merge.filt.fastq, out=/home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/trimmed_wood/woodFasta/lane1-s166-index-GCATACAG-GACACAGTNNNN-3w_S166_L001.fasta, fastawrap=0]
Input is being processed as unpaired
Input: 26545 reads 6140107 bases
Output: 26545 reads (100.00%) 6140107 bases (100.00%)
Time: 0.281 seconds.
Reads Processed: 26545 94.33k reads/sec
Bases Processed: 6140k 21.82m bases/sec
java -ea -Xmx200m -cp /home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/bbmap/current/ jgi.ReformatReads in=lane1-s167-index-TGCGAACT-GACACAGTNNNN-4w_S167_L001_R1_trimmed.merge.filt.fastq out=/home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/trimmed_wood/woodFasta/lane1-s167-index-TGCGAACT-GACACAGTNNNN-4w_S167_L001.fasta fastawrap=0
Executing jgi.ReformatReads [in=lane1-s167-index-TGCGAACT-GACACAGTNNNN-4w_S167_L001_R1_trimmed.merge.filt.fastq, out=/home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/trimmed_wood/woodFasta/lane1-s167-index-TGCGAACT-GACACAGTNNNN-4w_S167_L001.fasta, fastawrap=0]
Input is being processed as unpaired
Input: 48010 reads 11900026 bases
Output: 48010 reads (100.00%) 11900026 bases (100.00%)
Time: 0.374 seconds.
Reads Processed: 48010 128.37k reads/sec
Bases Processed: 11900k 31.82m bases/sec
java -ea -Xmx200m -cp /home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/bbmap/current/ jgi.ReformatReads in=lane1-s168-index-TCTCCGAT-GACACAGTNNNN-5w_S168_L001_R1_trimmed.merge.filt.fastq out=/home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/trimmed_wood/woodFasta/lane1-s168-index-TCTCCGAT-GACACAGTNNNN-5w_S168_L001.fasta fastawrap=0
Executing jgi.ReformatReads [in=lane1-s168-index-TCTCCGAT-GACACAGTNNNN-5w_S168_L001_R1_trimmed.merge.filt.fastq, out=/home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/trimmed_wood/woodFasta/lane1-s168-index-TCTCCGAT-GACACAGTNNNN-5w_S168_L001.fasta, fastawrap=0]
Input is being processed as unpaired
Input: 29049 reads 7036714 bases
Output: 29049 reads (100.00%) 7036714 bases (100.00%)
Time: 0.284 seconds.
Reads Processed: 29049 102.32k reads/sec
Bases Processed: 7036k 24.79m bases/sec
java -ea -Xmx200m -cp /home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/bbmap/current/ jgi.ReformatReads in=lane1-s169-index-GAGGACTT-GACACAGTNNNN-7w_S169_L001_R1_trimmed.merge.filt.fastq out=/home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/trimmed_wood/woodFasta/lane1-s169-index-GAGGACTT-GACACAGTNNNN-7w_S169_L001.fasta fastawrap=0
Executing jgi.ReformatReads [in=lane1-s169-index-GAGGACTT-GACACAGTNNNN-7w_S169_L001_R1_trimmed.merge.filt.fastq, out=/home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/trimmed_wood/woodFasta/lane1-s169-index-GAGGACTT-GACACAGTNNNN-7w_S169_L001.fasta, fastawrap=0]
Input is being processed as unpaired
Input: 51778 reads 12868924 bases
Output: 51778 reads (100.00%) 12868924 bases (100.00%)
Time: 0.448 seconds.
Reads Processed: 51778 115.58k reads/sec
Bases Processed: 12868k 28.73m bases/sec
java -ea -Xmx200m -cp /home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/bbmap/current/ jgi.ReformatReads in=lane1-s170-index-ACCATCCA-GACACAGTNNNN-9w_S170_L001_R1_trimmed.merge.filt.fastq out=/home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/trimmed_wood/woodFasta/lane1-s170-index-ACCATCCA-GACACAGTNNNN-9w_S170_L001.fasta fastawrap=0
Executing jgi.ReformatReads [in=lane1-s170-index-ACCATCCA-GACACAGTNNNN-9w_S170_L001_R1_trimmed.merge.filt.fastq, out=/home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/trimmed_wood/woodFasta/lane1-s170-index-ACCATCCA-GACACAGTNNNN-9w_S170_L001.fasta, fastawrap=0]
Input is being processed as unpaired
Input: 45329 reads 12205947 bases
Output: 45329 reads (100.00%) 12205947 bases (100.00%)
Time: 0.373 seconds.
Reads Processed: 45329 121.68k reads/sec
Bases Processed: 12205k 32.77m bases/sec
java -ea -Xmx200m -cp /home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/bbmap/current/ jgi.ReformatReads in=lane1-s171-index-CAACACCT-GACACAGTNNNN-10w_S171_L001_R1_trimmed.merge.filt.fastq out=/home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/trimmed_wood/woodFasta/lane1-s171-index-CAACACCT-GACACAGTNNNN-10w_S171_L001.fasta fastawrap=0
Executing jgi.ReformatReads [in=lane1-s171-index-CAACACCT-GACACAGTNNNN-10w_S171_L001_R1_trimmed.merge.filt.fastq, out=/home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/trimmed_wood/woodFasta/lane1-s171-index-CAACACCT-GACACAGTNNNN-10w_S171_L001.fasta, fastawrap=0]
Input is being processed as unpaired
Input: 44550 reads 12653456 bases
Output: 44550 reads (100.00%) 12653456 bases (100.00%)
Time: 0.560 seconds.
Reads Processed: 44550 79.56k reads/sec
Bases Processed: 12653k 22.60m bases/sec
java -ea -Xmx200m -cp /home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/bbmap/current/ jgi.ReformatReads in=lane1-s172-index-CTAGGTGA-GCATAACGNNNN-11w_S172_L001_R1_trimmed.merge.filt.fastq out=/home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/trimmed_wood/woodFasta/lane1-s172-index-CTAGGTGA-GCATAACGNNNN-11w_S172_L001.fasta fastawrap=0
Executing jgi.ReformatReads [in=lane1-s172-index-CTAGGTGA-GCATAACGNNNN-11w_S172_L001_R1_trimmed.merge.filt.fastq, out=/home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/trimmed_wood/woodFasta/lane1-s172-index-CTAGGTGA-GCATAACGNNNN-11w_S172_L001.fasta, fastawrap=0]
Input is being processed as unpaired
Input: 32720 reads 8010782 bases
Output: 32720 reads (100.00%) 8010782 bases (100.00%)
Time: 0.318 seconds.
Reads Processed: 32720 102.78k reads/sec
Bases Processed: 8010k 25.16m bases/sec
java -ea -Xmx200m -cp /home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/bbmap/current/ jgi.ReformatReads in=lane1-s173-index-ACGACTTG-GCATAACGNNNN-13w_S173_L001_R1_trimmed.merge.filt.fastq out=/home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/trimmed_wood/woodFasta/lane1-s173-index-ACGACTTG-GCATAACGNNNN-13w_S173_L001.fasta fastawrap=0
Executing jgi.ReformatReads [in=lane1-s173-index-ACGACTTG-GCATAACGNNNN-13w_S173_L001_R1_trimmed.merge.filt.fastq, out=/home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/trimmed_wood/woodFasta/lane1-s173-index-ACGACTTG-GCATAACGNNNN-13w_S173_L001.fasta, fastawrap=0]
Input is being processed as unpaired
Input: 26853 reads 6609581 bases
Output: 26853 reads (100.00%) 6609581 bases (100.00%)
Time: 0.292 seconds.
Reads Processed: 26853 91.97k reads/sec
Bases Processed: 6609k 22.64m bases/sec
java -ea -Xmx200m -cp /home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/bbmap/current/ jgi.ReformatReads in=lane1-s174-index-GCATACAG-GCATAACGNNNN-14w_S174_L001_R1_trimmed.merge.filt.fastq out=/home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/trimmed_wood/woodFasta/lane1-s174-index-GCATACAG-GCATAACGNNNN-14w_S174_L001.fasta fastawrap=0
Executing jgi.ReformatReads [in=lane1-s174-index-GCATACAG-GCATAACGNNNN-14w_S174_L001_R1_trimmed.merge.filt.fastq, out=/home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/trimmed_wood/woodFasta/lane1-s174-index-GCATACAG-GCATAACGNNNN-14w_S174_L001.fasta, fastawrap=0]
Input is being processed as unpaired
Input: 32106 reads 7892523 bases
Output: 32106 reads (100.00%) 7892523 bases (100.00%)
Time: 0.320 seconds.
Reads Processed: 32106 100.41k reads/sec
Bases Processed: 7892k 24.68m bases/sec
java -ea -Xmx200m -cp /home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/bbmap/current/ jgi.ReformatReads in=lane1-s175-index-TGCGAACT-GCATAACGNNNN-15w_S175_L001_R1_trimmed.merge.filt.fastq out=/home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/trimmed_wood/woodFasta/lane1-s175-index-TGCGAACT-GCATAACGNNNN-15w_S175_L001.fasta fastawrap=0
Executing jgi.ReformatReads [in=lane1-s175-index-TGCGAACT-GCATAACGNNNN-15w_S175_L001_R1_trimmed.merge.filt.fastq, out=/home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/trimmed_wood/woodFasta/lane1-s175-index-TGCGAACT-GCATAACGNNNN-15w_S175_L001.fasta, fastawrap=0]
Input is being processed as unpaired
Input: 29733 reads 7310003 bases
Output: 29733 reads (100.00%) 7310003 bases (100.00%)
Time: 0.305 seconds.
Reads Processed: 29733 97.51k reads/sec
Bases Processed: 7310k 23.97m bases/sec
java -ea -Xmx200m -cp /home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/bbmap/current/ jgi.ReformatReads in=lane1-s176-index-TCTCCGAT-GCATAACGNNNN-16w_S176_L001_R1_trimmed.merge.filt.fastq out=/home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/trimmed_wood/woodFasta/lane1-s176-index-TCTCCGAT-GCATAACGNNNN-16w_S176_L001.fasta fastawrap=0
Executing jgi.ReformatReads [in=lane1-s176-index-TCTCCGAT-GCATAACGNNNN-16w_S176_L001_R1_trimmed.merge.filt.fastq, out=/home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/trimmed_wood/woodFasta/lane1-s176-index-TCTCCGAT-GCATAACGNNNN-16w_S176_L001.fasta, fastawrap=0]
Input is being processed as unpaired
Input: 18788 reads 4705213 bases
Output: 18788 reads (100.00%) 4705213 bases (100.00%)
Time: 0.253 seconds.
Reads Processed: 18788 74.20k reads/sec
Bases Processed: 4705k 18.58m bases/sec
java -ea -Xmx200m -cp /home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/bbmap/current/ jgi.ReformatReads in=lane1-s177-index-GAGGACTT-GCATAACGNNNN-17w_S177_L001_R1_trimmed.merge.filt.fastq out=/home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/trimmed_wood/woodFasta/lane1-s177-index-GAGGACTT-GCATAACGNNNN-17w_S177_L001.fasta fastawrap=0
Executing jgi.ReformatReads [in=lane1-s177-index-GAGGACTT-GCATAACGNNNN-17w_S177_L001_R1_trimmed.merge.filt.fastq, out=/home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/trimmed_wood/woodFasta/lane1-s177-index-GAGGACTT-GCATAACGNNNN-17w_S177_L001.fasta, fastawrap=0]
Input is being processed as unpaired
Input: 49393 reads 11925772 bases
Output: 49393 reads (100.00%) 11925772 bases (100.00%)
Time: 0.364 seconds.
Reads Processed: 49393 135.73k reads/sec
Bases Processed: 11925k 32.77m bases/sec
java -ea -Xmx200m -cp /home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/bbmap/current/ jgi.ReformatReads in=lane1-s178-index-ACCATCCA-GCATAACGNNNN-18w_S178_L001_R1_trimmed.merge.filt.fastq out=/home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/trimmed_wood/woodFasta/lane1-s178-index-ACCATCCA-GCATAACGNNNN-18w_S178_L001.fasta fastawrap=0
Executing jgi.ReformatReads [in=lane1-s178-index-ACCATCCA-GCATAACGNNNN-18w_S178_L001_R1_trimmed.merge.filt.fastq, out=/home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/trimmed_wood/woodFasta/lane1-s178-index-ACCATCCA-GCATAACGNNNN-18w_S178_L001.fasta, fastawrap=0]
Input is being processed as unpaired
Input: 48365 reads 11220304 bases
Output: 48365 reads (100.00%) 11220304 bases (100.00%)
Time: 0.392 seconds.
Reads Processed: 48365 123.48k reads/sec
Bases Processed: 11220k 28.65m bases/sec
java -ea -Xmx200m -cp /home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/bbmap/current/ jgi.ReformatReads in=lane1-s179-index-CAACACCT-GCATAACGNNNN-19w_S179_L001_R1_trimmed.merge.filt.fastq out=/home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/trimmed_wood/woodFasta/lane1-s179-index-CAACACCT-GCATAACGNNNN-19w_S179_L001.fasta fastawrap=0
Executing jgi.ReformatReads [in=lane1-s179-index-CAACACCT-GCATAACGNNNN-19w_S179_L001_R1_trimmed.merge.filt.fastq, out=/home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/trimmed_wood/woodFasta/lane1-s179-index-CAACACCT-GCATAACGNNNN-19w_S179_L001.fasta, fastawrap=0]
Input is being processed as unpaired
Input: 27511 reads 6815101 bases
Output: 27511 reads (100.00%) 6815101 bases (100.00%)
Time: 0.295 seconds.
Reads Processed: 27511 93.18k reads/sec
Bases Processed: 6815k 23.08m bases/sec
java -ea -Xmx200m -cp /home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/bbmap/current/ jgi.ReformatReads in=lane1-s180-index-CTAGGTGA-ACAGAGGTNNNN-20w_S180_L001_R1_trimmed.merge.filt.fastq out=/home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/trimmed_wood/woodFasta/lane1-s180-index-CTAGGTGA-ACAGAGGTNNNN-20w_S180_L001.fasta fastawrap=0
Executing jgi.ReformatReads [in=lane1-s180-index-CTAGGTGA-ACAGAGGTNNNN-20w_S180_L001_R1_trimmed.merge.filt.fastq, out=/home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/trimmed_wood/woodFasta/lane1-s180-index-CTAGGTGA-ACAGAGGTNNNN-20w_S180_L001.fasta, fastawrap=0]
Input is being processed as unpaired
Input: 16381 reads 3977850 bases
Output: 16381 reads (100.00%) 3977850 bases (100.00%)
Time: 0.246 seconds.
Reads Processed: 16381 66.65k reads/sec
Bases Processed: 3977k 16.19m bases/sec
java -ea -Xmx200m -cp /home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/bbmap/current/ jgi.ReformatReads in=lane1-s181-index-ACGACTTG-ACAGAGGTNNNN-21w_S181_L001_R1_trimmed.merge.filt.fastq out=/home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/trimmed_wood/woodFasta/lane1-s181-index-ACGACTTG-ACAGAGGTNNNN-21w_S181_L001.fasta fastawrap=0
Executing jgi.ReformatReads [in=lane1-s181-index-ACGACTTG-ACAGAGGTNNNN-21w_S181_L001_R1_trimmed.merge.filt.fastq, out=/home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/trimmed_wood/woodFasta/lane1-s181-index-ACGACTTG-ACAGAGGTNNNN-21w_S181_L001.fasta, fastawrap=0]
Input is being processed as unpaired
Input: 44017 reads 10552175 bases
Output: 44017 reads (100.00%) 10552175 bases (100.00%)
Time: 0.583 seconds.
Reads Processed: 44017 75.51k reads/sec
Bases Processed: 10552k 18.10m bases/sec
java -ea -Xmx200m -cp /home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/bbmap/current/ jgi.ReformatReads in=lane1-s182-index-GCATACAG-ACAGAGGTNNNN-23w_S182_L001_R1_trimmed.merge.filt.fastq out=/home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/trimmed_wood/woodFasta/lane1-s182-index-GCATACAG-ACAGAGGTNNNN-23w_S182_L001.fasta fastawrap=0
Executing jgi.ReformatReads [in=lane1-s182-index-GCATACAG-ACAGAGGTNNNN-23w_S182_L001_R1_trimmed.merge.filt.fastq, out=/home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/trimmed_wood/woodFasta/lane1-s182-index-GCATACAG-ACAGAGGTNNNN-23w_S182_L001.fasta, fastawrap=0]
Input is being processed as unpaired
Input: 52683 reads 10889043 bases
Output: 52683 reads (100.00%) 10889043 bases (100.00%)
Time: 0.388 seconds.
Reads Processed: 52683 135.91k reads/sec
Bases Processed: 10889k 28.09m bases/sec
java -ea -Xmx200m -cp /home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/bbmap/current/ jgi.ReformatReads in=lane1-s183-index-TGCGAACT-ACAGAGGTNNNN-25w_S183_L001_R1_trimmed.merge.filt.fastq out=/home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/trimmed_wood/woodFasta/lane1-s183-index-TGCGAACT-ACAGAGGTNNNN-25w_S183_L001.fasta fastawrap=0
Executing jgi.ReformatReads [in=lane1-s183-index-TGCGAACT-ACAGAGGTNNNN-25w_S183_L001_R1_trimmed.merge.filt.fastq, out=/home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/trimmed_wood/woodFasta/lane1-s183-index-TGCGAACT-ACAGAGGTNNNN-25w_S183_L001.fasta, fastawrap=0]
Input is being processed as unpaired
Input: 36037 reads 10035894 bases
Output: 36037 reads (100.00%) 10035894 bases (100.00%)
Time: 0.320 seconds.
Reads Processed: 36037 112.51k reads/sec
Bases Processed: 10035k 31.33m bases/sec
java -ea -Xmx200m -cp /home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/bbmap/current/ jgi.ReformatReads in=lane1-s184-index-TCTCCGAT-ACAGAGGTNNNN-26w_S184_L001_R1_trimmed.merge.filt.fastq out=/home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/trimmed_wood/woodFasta/lane1-s184-index-TCTCCGAT-ACAGAGGTNNNN-26w_S184_L001.fasta fastawrap=0
Executing jgi.ReformatReads [in=lane1-s184-index-TCTCCGAT-ACAGAGGTNNNN-26w_S184_L001_R1_trimmed.merge.filt.fastq, out=/home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/trimmed_wood/woodFasta/lane1-s184-index-TCTCCGAT-ACAGAGGTNNNN-26w_S184_L001.fasta, fastawrap=0]
Input is being processed as unpaired
Input: 65050 reads 17811677 bases
Output: 65050 reads (100.00%) 17811677 bases (100.00%)
Time: 0.908 seconds.
Reads Processed: 65050 71.66k reads/sec
Bases Processed: 17811k 19.62m bases/sec
java -ea -Xmx200m -cp /home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/bbmap/current/ jgi.ReformatReads in=lane1-s185-index-GAGGACTT-ACAGAGGTNNNN-27w_S185_L001_R1_trimmed.merge.filt.fastq out=/home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/trimmed_wood/woodFasta/lane1-s185-index-GAGGACTT-ACAGAGGTNNNN-27w_S185_L001.fasta fastawrap=0
Executing jgi.ReformatReads [in=lane1-s185-index-GAGGACTT-ACAGAGGTNNNN-27w_S185_L001_R1_trimmed.merge.filt.fastq, out=/home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/trimmed_wood/woodFasta/lane1-s185-index-GAGGACTT-ACAGAGGTNNNN-27w_S185_L001.fasta, fastawrap=0]
Input is being processed as unpaired
Input: 43556 reads 10767375 bases
Output: 43556 reads (100.00%) 10767375 bases (100.00%)
Time: 0.357 seconds.
Reads Processed: 43556 121.95k reads/sec
Bases Processed: 10767k 30.15m bases/sec
java -ea -Xmx200m -cp /home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/bbmap/current/ jgi.ReformatReads in=lane1-s186-index-ACCATCCA-ACAGAGGTNNNN-28w_S186_L001_R1_trimmed.merge.filt.fastq out=/home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/trimmed_wood/woodFasta/lane1-s186-index-ACCATCCA-ACAGAGGTNNNN-28w_S186_L001.fasta fastawrap=0
Executing jgi.ReformatReads [in=lane1-s186-index-ACCATCCA-ACAGAGGTNNNN-28w_S186_L001_R1_trimmed.merge.filt.fastq, out=/home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/trimmed_wood/woodFasta/lane1-s186-index-ACCATCCA-ACAGAGGTNNNN-28w_S186_L001.fasta, fastawrap=0]
Input is being processed as unpaired
Input: 43484 reads 11231013 bases
Output: 43484 reads (100.00%) 11231013 bases (100.00%)
Time: 0.372 seconds.
Reads Processed: 43484 116.89k reads/sec
Bases Processed: 11231k 30.19m bases/sec
java -ea -Xmx200m -cp /home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/bbmap/current/ jgi.ReformatReads in=lane1-s187-index-CAACACCT-ACAGAGGTNNNN-29w_S187_L001_R1_trimmed.merge.filt.fastq out=/home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/trimmed_wood/woodFasta/lane1-s187-index-CAACACCT-ACAGAGGTNNNN-29w_S187_L001.fasta fastawrap=0
Executing jgi.ReformatReads [in=lane1-s187-index-CAACACCT-ACAGAGGTNNNN-29w_S187_L001_R1_trimmed.merge.filt.fastq, out=/home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/trimmed_wood/woodFasta/lane1-s187-index-CAACACCT-ACAGAGGTNNNN-29w_S187_L001.fasta, fastawrap=0]
Input is being processed as unpaired
Input: 56656 reads 13838702 bases
Output: 56656 reads (100.00%) 13838702 bases (100.00%)
Time: 0.712 seconds.
Reads Processed: 56656 79.55k reads/sec
Bases Processed: 13838k 19.43m bases/sec
java -ea -Xmx200m -cp /home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/bbmap/current/ jgi.ReformatReads in=lane1-s188-index-CTAGGTGA-CCACTAAGNNNN-30w_S188_L001_R1_trimmed.merge.filt.fastq out=/home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/trimmed_wood/woodFasta/lane1-s188-index-CTAGGTGA-CCACTAAGNNNN-30w_S188_L001.fasta fastawrap=0
Executing jgi.ReformatReads [in=lane1-s188-index-CTAGGTGA-CCACTAAGNNNN-30w_S188_L001_R1_trimmed.merge.filt.fastq, out=/home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/trimmed_wood/woodFasta/lane1-s188-index-CTAGGTGA-CCACTAAGNNNN-30w_S188_L001.fasta, fastawrap=0]
Input is being processed as unpaired
Input: 55293 reads 13069296 bases
Output: 55293 reads (100.00%) 13069296 bases (100.00%)
Time: 0.456 seconds.
Reads Processed: 55293 121.39k reads/sec
Bases Processed: 13069k 28.69m bases/sec
java -ea -Xmx200m -cp /home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/bbmap/current/ jgi.ReformatReads in=lane1-s189-index-ACGACTTG-CCACTAAGNNNN-31w_S189_L001_R1_trimmed.merge.filt.fastq out=/home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/trimmed_wood/woodFasta/lane1-s189-index-ACGACTTG-CCACTAAGNNNN-31w_S189_L001.fasta fastawrap=0
Executing jgi.ReformatReads [in=lane1-s189-index-ACGACTTG-CCACTAAGNNNN-31w_S189_L001_R1_trimmed.merge.filt.fastq, out=/home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/trimmed_wood/woodFasta/lane1-s189-index-ACGACTTG-CCACTAAGNNNN-31w_S189_L001.fasta, fastawrap=0]
Input is being processed as unpaired
Input: 68876 reads 16977054 bases
Output: 68876 reads (100.00%) 16977054 bases (100.00%)
Time: 0.667 seconds.
Reads Processed: 68876 103.33k reads/sec
Bases Processed: 16977k 25.47m bases/sec
java -ea -Xmx200m -cp /home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/bbmap/current/ jgi.ReformatReads in=lane1-s190-index-GCATACAG-CCACTAAGNNNN-32w_S190_L001_R1_trimmed.merge.filt.fastq out=/home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/trimmed_wood/woodFasta/lane1-s190-index-GCATACAG-CCACTAAGNNNN-32w_S190_L001.fasta fastawrap=0
Executing jgi.ReformatReads [in=lane1-s190-index-GCATACAG-CCACTAAGNNNN-32w_S190_L001_R1_trimmed.merge.filt.fastq, out=/home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/trimmed_wood/woodFasta/lane1-s190-index-GCATACAG-CCACTAAGNNNN-32w_S190_L001.fasta, fastawrap=0]
Input is being processed as unpaired
Input: 34952 reads 8574381 bases
Output: 34952 reads (100.00%) 8574381 bases (100.00%)
Time: 0.520 seconds.
Reads Processed: 34952 67.19k reads/sec
Bases Processed: 8574k 16.48m bases/sec
java -ea -Xmx200m -cp /home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/bbmap/current/ jgi.ReformatReads in=lane1-s191-index-TGCGAACT-CCACTAAGNNNN-35w_S191_L001_R1_trimmed.merge.filt.fastq out=/home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/trimmed_wood/woodFasta/lane1-s191-index-TGCGAACT-CCACTAAGNNNN-35w_S191_L001.fasta fastawrap=0
Executing jgi.ReformatReads [in=lane1-s191-index-TGCGAACT-CCACTAAGNNNN-35w_S191_L001_R1_trimmed.merge.filt.fastq, out=/home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/trimmed_wood/woodFasta/lane1-s191-index-TGCGAACT-CCACTAAGNNNN-35w_S191_L001.fasta, fastawrap=0]
Input is being processed as unpaired
Input: 32858 reads 7828477 bases
Output: 32858 reads (100.00%) 7828477 bases (100.00%)
Time: 0.493 seconds.
Reads Processed: 32858 66.69k reads/sec
Bases Processed: 7828k 15.89m bases/sec
java -ea -Xmx200m -cp /home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/bbmap/current/ jgi.ReformatReads in=lane1-s192-index-TCTCCGAT-CCACTAAGNNNN-36w_S192_L001_R1_trimmed.merge.filt.fastq out=/home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/trimmed_wood/woodFasta/lane1-s192-index-TCTCCGAT-CCACTAAGNNNN-36w_S192_L001.fasta fastawrap=0
Executing jgi.ReformatReads [in=lane1-s192-index-TCTCCGAT-CCACTAAGNNNN-36w_S192_L001_R1_trimmed.merge.filt.fastq, out=/home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/trimmed_wood/woodFasta/lane1-s192-index-TCTCCGAT-CCACTAAGNNNN-36w_S192_L001.fasta, fastawrap=0]
Input is being processed as unpaired
Input: 40056 reads 9917635 bases
Output: 40056 reads (100.00%) 9917635 bases (100.00%)
Time: 0.346 seconds.
Reads Processed: 40056 115.64k reads/sec
Bases Processed: 9917k 28.63m bases/sec
java -ea -Xmx200m -cp /home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/bbmap/current/ jgi.ReformatReads in=lane1-s193-index-GAGGACTT-CCACTAAGNNNN-37w_S193_L001_R1_trimmed.merge.filt.fastq out=/home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/trimmed_wood/woodFasta/lane1-s193-index-GAGGACTT-CCACTAAGNNNN-37w_S193_L001.fasta fastawrap=0
Executing jgi.ReformatReads [in=lane1-s193-index-GAGGACTT-CCACTAAGNNNN-37w_S193_L001_R1_trimmed.merge.filt.fastq, out=/home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/trimmed_wood/woodFasta/lane1-s193-index-GAGGACTT-CCACTAAGNNNN-37w_S193_L001.fasta, fastawrap=0]
Input is being processed as unpaired
Input: 55535 reads 13779964 bases
Output: 55535 reads (100.00%) 13779964 bases (100.00%)
Time: 0.453 seconds.
Reads Processed: 55535 122.64k reads/sec
Bases Processed: 13779k 30.43m bases/sec
java -ea -Xmx200m -cp /home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/bbmap/current/ jgi.ReformatReads in=lane1-s194-index-ACCATCCA-CCACTAAGNNNN-38w_S194_L001_R1_trimmed.merge.filt.fastq out=/home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/trimmed_wood/woodFasta/lane1-s194-index-ACCATCCA-CCACTAAGNNNN-38w_S194_L001.fasta fastawrap=0
Executing jgi.ReformatReads [in=lane1-s194-index-ACCATCCA-CCACTAAGNNNN-38w_S194_L001_R1_trimmed.merge.filt.fastq, out=/home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/trimmed_wood/woodFasta/lane1-s194-index-ACCATCCA-CCACTAAGNNNN-38w_S194_L001.fasta, fastawrap=0]
Input is being processed as unpaired
Input: 36142 reads 9145609 bases
Output: 36142 reads (100.00%) 9145609 bases (100.00%)
Time: 0.317 seconds.
Reads Processed: 36142 113.86k reads/sec
Bases Processed: 9145k 28.81m bases/sec
java -ea -Xmx200m -cp /home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/bbmap/current/ jgi.ReformatReads in=lane1-s195-index-CAACACCT-CCACTAAGNNNN-39w_S195_L001_R1_trimmed.merge.filt.fastq out=/home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/trimmed_wood/woodFasta/lane1-s195-index-CAACACCT-CCACTAAGNNNN-39w_S195_L001.fasta fastawrap=0
Executing jgi.ReformatReads [in=lane1-s195-index-CAACACCT-CCACTAAGNNNN-39w_S195_L001_R1_trimmed.merge.filt.fastq, out=/home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/trimmed_wood/woodFasta/lane1-s195-index-CAACACCT-CCACTAAGNNNN-39w_S195_L001.fasta, fastawrap=0]
Input is being processed as unpaired
Input: 53459 reads 12626651 bases
Output: 53459 reads (100.00%) 12626651 bases (100.00%)
Time: 0.379 seconds.
Reads Processed: 53459 141.19k reads/sec
Bases Processed: 12626k 33.35m bases/sec
java -ea -Xmx200m -cp /home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/bbmap/current/ jgi.ReformatReads in=lane1-s196-index-CTAGGTGA-TGTTCCGTNNNN-42w_S196_L001_R1_trimmed.merge.filt.fastq out=/home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/trimmed_wood/woodFasta/lane1-s196-index-CTAGGTGA-TGTTCCGTNNNN-42w_S196_L001.fasta fastawrap=0
Executing jgi.ReformatReads [in=lane1-s196-index-CTAGGTGA-TGTTCCGTNNNN-42w_S196_L001_R1_trimmed.merge.filt.fastq, out=/home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/trimmed_wood/woodFasta/lane1-s196-index-CTAGGTGA-TGTTCCGTNNNN-42w_S196_L001.fasta, fastawrap=0]
Input is being processed as unpaired
Input: 42947 reads 10600505 bases
Output: 42947 reads (100.00%) 10600505 bases (100.00%)
Time: 0.376 seconds.
Reads Processed: 42947 114.09k reads/sec
Bases Processed: 10600k 28.16m bases/sec
java -ea -Xmx200m -cp /home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/bbmap/current/ jgi.ReformatReads in=lane1-s197-index-ACGACTTG-TGTTCCGTNNNN-45w_S197_L001_R1_trimmed.merge.filt.fastq out=/home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/trimmed_wood/woodFasta/lane1-s197-index-ACGACTTG-TGTTCCGTNNNN-45w_S197_L001.fasta fastawrap=0
Executing jgi.ReformatReads [in=lane1-s197-index-ACGACTTG-TGTTCCGTNNNN-45w_S197_L001_R1_trimmed.merge.filt.fastq, out=/home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/trimmed_wood/woodFasta/lane1-s197-index-ACGACTTG-TGTTCCGTNNNN-45w_S197_L001.fasta, fastawrap=0]
Input is being processed as unpaired
Input: 20785 reads 4887387 bases
Output: 20785 reads (100.00%) 4887387 bases (100.00%)
Time: 0.465 seconds.
Reads Processed: 20785 44.70k reads/sec
Bases Processed: 4887k 10.51m bases/sec
java -ea -Xmx200m -cp /home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/bbmap/current/ jgi.ReformatReads in=lane1-s198-index-GCATACAG-TGTTCCGTNNNN-46w_S198_L001_R1_trimmed.merge.filt.fastq out=/home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/trimmed_wood/woodFasta/lane1-s198-index-GCATACAG-TGTTCCGTNNNN-46w_S198_L001.fasta fastawrap=0
Executing jgi.ReformatReads [in=lane1-s198-index-GCATACAG-TGTTCCGTNNNN-46w_S198_L001_R1_trimmed.merge.filt.fastq, out=/home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/trimmed_wood/woodFasta/lane1-s198-index-GCATACAG-TGTTCCGTNNNN-46w_S198_L001.fasta, fastawrap=0]
Input is being processed as unpaired
Input: 40003 reads 9918210 bases
Output: 40003 reads (100.00%) 9918210 bases (100.00%)
Time: 0.552 seconds.
Reads Processed: 40003 72.50k reads/sec
Bases Processed: 9918k 17.98m bases/sec
java -ea -Xmx200m -cp /home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/bbmap/current/ jgi.ReformatReads in=lane1-s199-index-TGCGAACT-TGTTCCGTNNNN-49w_S199_L001_R1_trimmed.merge.filt.fastq out=/home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/trimmed_wood/woodFasta/lane1-s199-index-TGCGAACT-TGTTCCGTNNNN-49w_S199_L001.fasta fastawrap=0
Executing jgi.ReformatReads [in=lane1-s199-index-TGCGAACT-TGTTCCGTNNNN-49w_S199_L001_R1_trimmed.merge.filt.fastq, out=/home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/trimmed_wood/woodFasta/lane1-s199-index-TGCGAACT-TGTTCCGTNNNN-49w_S199_L001.fasta, fastawrap=0]
Input is being processed as unpaired
Input: 32744 reads 8114086 bases
Output: 32744 reads (100.00%) 8114086 bases (100.00%)
Time: 0.341 seconds.
Reads Processed: 32744 96.00k reads/sec
Bases Processed: 8114k 23.79m bases/sec
java -ea -Xmx200m -cp /home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/bbmap/current/ jgi.ReformatReads in=lane1-s200-index-TCTCCGAT-TGTTCCGTNNNN-50w_S200_L001_R1_trimmed.merge.filt.fastq out=/home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/trimmed_wood/woodFasta/lane1-s200-index-TCTCCGAT-TGTTCCGTNNNN-50w_S200_L001.fasta fastawrap=0
Executing jgi.ReformatReads [in=lane1-s200-index-TCTCCGAT-TGTTCCGTNNNN-50w_S200_L001_R1_trimmed.merge.filt.fastq, out=/home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/trimmed_wood/woodFasta/lane1-s200-index-TCTCCGAT-TGTTCCGTNNNN-50w_S200_L001.fasta, fastawrap=0]
Input is being processed as unpaired
Input: 64561 reads 15098028 bases
Output: 64561 reads (100.00%) 15098028 bases (100.00%)
Time: 0.785 seconds.
Reads Processed: 64561 82.24k reads/sec
Bases Processed: 15098k 19.23m bases/sec
java -ea -Xmx200m -cp /home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/bbmap/current/ jgi.ReformatReads in=lane1-s201-index-GAGGACTT-TGTTCCGTNNNN-52w_S201_L001_R1_trimmed.merge.filt.fastq out=/home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/trimmed_wood/woodFasta/lane1-s201-index-GAGGACTT-TGTTCCGTNNNN-52w_S201_L001.fasta fastawrap=0
Executing jgi.ReformatReads [in=lane1-s201-index-GAGGACTT-TGTTCCGTNNNN-52w_S201_L001_R1_trimmed.merge.filt.fastq, out=/home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/trimmed_wood/woodFasta/lane1-s201-index-GAGGACTT-TGTTCCGTNNNN-52w_S201_L001.fasta, fastawrap=0]
Input is being processed as unpaired
Input: 30722 reads 7780545 bases
Output: 30722 reads (100.00%) 7780545 bases (100.00%)
Time: 0.303 seconds.
Reads Processed: 30722 101.47k reads/sec
Bases Processed: 7780k 25.70m bases/sec
java -ea -Xmx200m -cp /home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/bbmap/current/ jgi.ReformatReads in=lane1-s202-index-ACCATCCA-TGTTCCGTNNNN-55w_S202_L001_R1_trimmed.merge.filt.fastq out=/home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/trimmed_wood/woodFasta/lane1-s202-index-ACCATCCA-TGTTCCGTNNNN-55w_S202_L001.fasta fastawrap=0
Executing jgi.ReformatReads [in=lane1-s202-index-ACCATCCA-TGTTCCGTNNNN-55w_S202_L001_R1_trimmed.merge.filt.fastq, out=/home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/trimmed_wood/woodFasta/lane1-s202-index-ACCATCCA-TGTTCCGTNNNN-55w_S202_L001.fasta, fastawrap=0]
Input is being processed as unpaired
Input: 34837 reads 8267255 bases
Output: 34837 reads (100.00%) 8267255 bases (100.00%)
Time: 0.320 seconds.
Reads Processed: 34837 108.75k reads/sec
Bases Processed: 8267k 25.81m bases/sec
java -ea -Xmx200m -cp /home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/bbmap/current/ jgi.ReformatReads in=lane1-s203-index-CAACACCT-TGTTCCGTNNNN-56w_S203_L001_R1_trimmed.merge.filt.fastq out=/home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/trimmed_wood/woodFasta/lane1-s203-index-CAACACCT-TGTTCCGTNNNN-56w_S203_L001.fasta fastawrap=0
Executing jgi.ReformatReads [in=lane1-s203-index-CAACACCT-TGTTCCGTNNNN-56w_S203_L001_R1_trimmed.merge.filt.fastq, out=/home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/trimmed_wood/woodFasta/lane1-s203-index-CAACACCT-TGTTCCGTNNNN-56w_S203_L001.fasta, fastawrap=0]
Input is being processed as unpaired
Input: 43974 reads 10301118 bases
Output: 43974 reads (100.00%) 10301118 bases (100.00%)
Time: 0.373 seconds.
Reads Processed: 43974 117.90k reads/sec
Bases Processed: 10301k 27.62m bases/sec
java -ea -Xmx200m -cp /home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/bbmap/current/ jgi.ReformatReads in=lane1-s204-index-CTAGGTGA-GATACCTGNNNN-57w_S204_L001_R1_trimmed.merge.filt.fastq out=/home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/trimmed_wood/woodFasta/lane1-s204-index-CTAGGTGA-GATACCTGNNNN-57w_S204_L001.fasta fastawrap=0
Executing jgi.ReformatReads [in=lane1-s204-index-CTAGGTGA-GATACCTGNNNN-57w_S204_L001_R1_trimmed.merge.filt.fastq, out=/home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/trimmed_wood/woodFasta/lane1-s204-index-CTAGGTGA-GATACCTGNNNN-57w_S204_L001.fasta, fastawrap=0]
Input is being processed as unpaired
Input: 38789 reads 8938472 bases
Output: 38789 reads (100.00%) 8938472 bases (100.00%)
Time: 0.339 seconds.
Reads Processed: 38789 114.32k reads/sec
Bases Processed: 8938k 26.34m bases/sec
java -ea -Xmx200m -cp /home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/bbmap/current/ jgi.ReformatReads in=lane1-s205-index-ACGACTTG-GATACCTGNNNN-58w_S205_L001_R1_trimmed.merge.filt.fastq out=/home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/trimmed_wood/woodFasta/lane1-s205-index-ACGACTTG-GATACCTGNNNN-58w_S205_L001.fasta fastawrap=0
Executing jgi.ReformatReads [in=lane1-s205-index-ACGACTTG-GATACCTGNNNN-58w_S205_L001_R1_trimmed.merge.filt.fastq, out=/home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/trimmed_wood/woodFasta/lane1-s205-index-ACGACTTG-GATACCTGNNNN-58w_S205_L001.fasta, fastawrap=0]
Input is being processed as unpaired
Input: 56706 reads 13264989 bases
Output: 56706 reads (100.00%) 13264989 bases (100.00%)
Time: 0.479 seconds.
Reads Processed: 56706 118.45k reads/sec
Bases Processed: 13264k 27.71m bases/sec
java -ea -Xmx200m -cp /home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/bbmap/current/ jgi.ReformatReads in=lane1-s206-index-GCATACAG-GATACCTGNNNN-59w_S206_L001_R1_trimmed.merge.filt.fastq out=/home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/trimmed_wood/woodFasta/lane1-s206-index-GCATACAG-GATACCTGNNNN-59w_S206_L001.fasta fastawrap=0
Executing jgi.ReformatReads [in=lane1-s206-index-GCATACAG-GATACCTGNNNN-59w_S206_L001_R1_trimmed.merge.filt.fastq, out=/home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/trimmed_wood/woodFasta/lane1-s206-index-GCATACAG-GATACCTGNNNN-59w_S206_L001.fasta, fastawrap=0]
Input is being processed as unpaired
Input: 35412 reads 8545801 bases
Output: 35412 reads (100.00%) 8545801 bases (100.00%)
Time: 0.351 seconds.
Reads Processed: 35412 100.92k reads/sec
Bases Processed: 8545k 24.35m bases/sec
java -ea -Xmx200m -cp /home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/bbmap/current/ jgi.ReformatReads in=lane1-s207-index-TGCGAACT-GATACCTGNNNN-60w_S207_L001_R1_trimmed.merge.filt.fastq out=/home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/trimmed_wood/woodFasta/lane1-s207-index-TGCGAACT-GATACCTGNNNN-60w_S207_L001.fasta fastawrap=0
Executing jgi.ReformatReads [in=lane1-s207-index-TGCGAACT-GATACCTGNNNN-60w_S207_L001_R1_trimmed.merge.filt.fastq, out=/home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/trimmed_wood/woodFasta/lane1-s207-index-TGCGAACT-GATACCTGNNNN-60w_S207_L001.fasta, fastawrap=0]
Input is being processed as unpaired
Input: 38176 reads 9956923 bases
Output: 38176 reads (100.00%) 9956923 bases (100.00%)
Time: 0.344 seconds.
Reads Processed: 38176 110.88k reads/sec
Bases Processed: 9956k 28.92m bases/sec
java -ea -Xmx200m -cp /home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/bbmap/current/ jgi.ReformatReads in=lane1-s208-index-TCTCCGAT-GATACCTGNNNN-61w_S208_L001_R1_trimmed.merge.filt.fastq out=/home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/trimmed_wood/woodFasta/lane1-s208-index-TCTCCGAT-GATACCTGNNNN-61w_S208_L001.fasta fastawrap=0
Executing jgi.ReformatReads [in=lane1-s208-index-TCTCCGAT-GATACCTGNNNN-61w_S208_L001_R1_trimmed.merge.filt.fastq, out=/home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/trimmed_wood/woodFasta/lane1-s208-index-TCTCCGAT-GATACCTGNNNN-61w_S208_L001.fasta, fastawrap=0]
Input is being processed as unpaired
Input: 45202 reads 10624141 bases
Output: 45202 reads (100.00%) 10624141 bases (100.00%)
Time: 0.374 seconds.
Reads Processed: 45202 120.96k reads/sec
Bases Processed: 10624k 28.43m bases/sec
java -ea -Xmx200m -cp /home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/bbmap/current/ jgi.ReformatReads in=lane1-s209-index-GAGGACTT-GATACCTGNNNN-64w_S209_L001_R1_trimmed.merge.filt.fastq out=/home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/trimmed_wood/woodFasta/lane1-s209-index-GAGGACTT-GATACCTGNNNN-64w_S209_L001.fasta fastawrap=0
Executing jgi.ReformatReads [in=lane1-s209-index-GAGGACTT-GATACCTGNNNN-64w_S209_L001_R1_trimmed.merge.filt.fastq, out=/home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/trimmed_wood/woodFasta/lane1-s209-index-GAGGACTT-GATACCTGNNNN-64w_S209_L001.fasta, fastawrap=0]
Input is being processed as unpaired
Input: 52038 reads 12955860 bases
Output: 52038 reads (100.00%) 12955860 bases (100.00%)
Time: 0.644 seconds.
Reads Processed: 52038 80.81k reads/sec
Bases Processed: 12955k 20.12m bases/sec
java -ea -Xmx200m -cp /home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/bbmap/current/ jgi.ReformatReads in=lane1-s210-index-ACCATCCA-GATACCTGNNNN-66w_S210_L001_R1_trimmed.merge.filt.fastq out=/home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/trimmed_wood/woodFasta/lane1-s210-index-ACCATCCA-GATACCTGNNNN-66w_S210_L001.fasta fastawrap=0
Executing jgi.ReformatReads [in=lane1-s210-index-ACCATCCA-GATACCTGNNNN-66w_S210_L001_R1_trimmed.merge.filt.fastq, out=/home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/trimmed_wood/woodFasta/lane1-s210-index-ACCATCCA-GATACCTGNNNN-66w_S210_L001.fasta, fastawrap=0]
Input is being processed as unpaired
Input: 23127 reads 5261867 bases
Output: 23127 reads (100.00%) 5261867 bases (100.00%)
Time: 0.451 seconds.
Reads Processed: 23127 51.25k reads/sec
Bases Processed: 5261k 11.66m bases/sec
java -ea -Xmx200m -cp /home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/bbmap/current/ jgi.ReformatReads in=lane1-s211-index-CAACACCT-GATACCTGNNNN-67w_S211_L001_R1_trimmed.merge.filt.fastq out=/home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/trimmed_wood/woodFasta/lane1-s211-index-CAACACCT-GATACCTGNNNN-67w_S211_L001.fasta fastawrap=0
Executing jgi.ReformatReads [in=lane1-s211-index-CAACACCT-GATACCTGNNNN-67w_S211_L001_R1_trimmed.merge.filt.fastq, out=/home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/trimmed_wood/woodFasta/lane1-s211-index-CAACACCT-GATACCTGNNNN-67w_S211_L001.fasta, fastawrap=0]
Input is being processed as unpaired
Input: 8913 reads 2016016 bases
Output: 8913 reads (100.00%) 2016016 bases (100.00%)
Time: 0.234 seconds.
Reads Processed: 8913 38.04k reads/sec
Bases Processed: 2016k 8.60m bases/sec
java -ea -Xmx200m -cp /home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/bbmap/current/ jgi.ReformatReads in=lane1-s212-index-CTAGGTGA-AGCCGTAANNNN-68w_S212_L001_R1_trimmed.merge.filt.fastq out=/home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/trimmed_wood/woodFasta/lane1-s212-index-CTAGGTGA-AGCCGTAANNNN-68w_S212_L001.fasta fastawrap=0
Executing jgi.ReformatReads [in=lane1-s212-index-CTAGGTGA-AGCCGTAANNNN-68w_S212_L001_R1_trimmed.merge.filt.fastq, out=/home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/trimmed_wood/woodFasta/lane1-s212-index-CTAGGTGA-AGCCGTAANNNN-68w_S212_L001.fasta, fastawrap=0]
Input is being processed as unpaired
Input: 42053 reads 11038090 bases
Output: 42053 reads (100.00%) 11038090 bases (100.00%)
Time: 0.346 seconds.
Reads Processed: 42053 121.66k reads/sec
Bases Processed: 11038k 31.93m bases/sec
java -ea -Xmx200m -cp /home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/bbmap/current/ jgi.ReformatReads in=lane1-s213-index-ACGACTTG-AGCCGTAANNNN-69w_S213_L001_R1_trimmed.merge.filt.fastq out=/home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/trimmed_wood/woodFasta/lane1-s213-index-ACGACTTG-AGCCGTAANNNN-69w_S213_L001.fasta fastawrap=0
Executing jgi.ReformatReads [in=lane1-s213-index-ACGACTTG-AGCCGTAANNNN-69w_S213_L001_R1_trimmed.merge.filt.fastq, out=/home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/trimmed_wood/woodFasta/lane1-s213-index-ACGACTTG-AGCCGTAANNNN-69w_S213_L001.fasta, fastawrap=0]
Input is being processed as unpaired
Input: 38085 reads 8622167 bases
Output: 38085 reads (100.00%) 8622167 bases (100.00%)
Time: 0.356 seconds.
Reads Processed: 38085 107.00k reads/sec
Bases Processed: 8622k 24.22m bases/sec
java -ea -Xmx200m -cp /home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/bbmap/current/ jgi.ReformatReads in=lane1-s214-index-GCATACAG-AGCCGTAANNNN-70w_S214_L001_R1_trimmed.merge.filt.fastq out=/home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/trimmed_wood/woodFasta/lane1-s214-index-GCATACAG-AGCCGTAANNNN-70w_S214_L001.fasta fastawrap=0
Executing jgi.ReformatReads [in=lane1-s214-index-GCATACAG-AGCCGTAANNNN-70w_S214_L001_R1_trimmed.merge.filt.fastq, out=/home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/trimmed_wood/woodFasta/lane1-s214-index-GCATACAG-AGCCGTAANNNN-70w_S214_L001.fasta, fastawrap=0]
Input is being processed as unpaired
Input: 34443 reads 8401218 bases
Output: 34443 reads (100.00%) 8401218 bases (100.00%)
Time: 0.304 seconds.
Reads Processed: 34443 113.15k reads/sec
Bases Processed: 8401k 27.60m bases/sec
java -ea -Xmx200m -cp /home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/bbmap/current/ jgi.ReformatReads in=lane1-s215-index-TGCGAACT-AGCCGTAANNNN-71w_S215_L001_R1_trimmed.merge.filt.fastq out=/home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/trimmed_wood/woodFasta/lane1-s215-index-TGCGAACT-AGCCGTAANNNN-71w_S215_L001.fasta fastawrap=0
Executing jgi.ReformatReads [in=lane1-s215-index-TGCGAACT-AGCCGTAANNNN-71w_S215_L001_R1_trimmed.merge.filt.fastq, out=/home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/trimmed_wood/woodFasta/lane1-s215-index-TGCGAACT-AGCCGTAANNNN-71w_S215_L001.fasta, fastawrap=0]
Input is being processed as unpaired
Input: 42640 reads 11107641 bases
Output: 42640 reads (100.00%) 11107641 bases (100.00%)
Time: 0.359 seconds.
Reads Processed: 42640 118.91k reads/sec
Bases Processed: 11107k 30.98m bases/sec
java -ea -Xmx200m -cp /home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/bbmap/current/ jgi.ReformatReads in=lane1-s216-index-TCTCCGAT-AGCCGTAANNNN-72w_S216_L001_R1_trimmed.merge.filt.fastq out=/home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/trimmed_wood/woodFasta/lane1-s216-index-TCTCCGAT-AGCCGTAANNNN-72w_S216_L001.fasta fastawrap=0
Executing jgi.ReformatReads [in=lane1-s216-index-TCTCCGAT-AGCCGTAANNNN-72w_S216_L001_R1_trimmed.merge.filt.fastq, out=/home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/trimmed_wood/woodFasta/lane1-s216-index-TCTCCGAT-AGCCGTAANNNN-72w_S216_L001.fasta, fastawrap=0]
Input is being processed as unpaired
Input: 44885 reads 11539491 bases
Output: 44885 reads (100.00%) 11539491 bases (100.00%)
Time: 0.346 seconds.
Reads Processed: 44885 129.57k reads/sec
Bases Processed: 11539k 33.31m bases/sec
java -ea -Xmx200m -cp /home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/bbmap/current/ jgi.ReformatReads in=lane1-s217-index-GAGGACTT-AGCCGTAANNNN-73w_S217_L001_R1_trimmed.merge.filt.fastq out=/home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/trimmed_wood/woodFasta/lane1-s217-index-GAGGACTT-AGCCGTAANNNN-73w_S217_L001.fasta fastawrap=0
Executing jgi.ReformatReads [in=lane1-s217-index-GAGGACTT-AGCCGTAANNNN-73w_S217_L001_R1_trimmed.merge.filt.fastq, out=/home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/trimmed_wood/woodFasta/lane1-s217-index-GAGGACTT-AGCCGTAANNNN-73w_S217_L001.fasta, fastawrap=0]
Input is being processed as unpaired
Input: 43172 reads 10709359 bases
Output: 43172 reads (100.00%) 10709359 bases (100.00%)
Time: 0.348 seconds.
Reads Processed: 43172 124.12k reads/sec
Bases Processed: 10709k 30.79m bases/sec
java -ea -Xmx200m -cp /home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/bbmap/current/ jgi.ReformatReads in=lane1-s218-index-ACCATCCA-AGCCGTAANNNN-74w_S218_L001_R1_trimmed.merge.filt.fastq out=/home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/trimmed_wood/woodFasta/lane1-s218-index-ACCATCCA-AGCCGTAANNNN-74w_S218_L001.fasta fastawrap=0
Executing jgi.ReformatReads [in=lane1-s218-index-ACCATCCA-AGCCGTAANNNN-74w_S218_L001_R1_trimmed.merge.filt.fastq, out=/home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/trimmed_wood/woodFasta/lane1-s218-index-ACCATCCA-AGCCGTAANNNN-74w_S218_L001.fasta, fastawrap=0]
Input is being processed as unpaired
Input: 61181 reads 14339075 bases
Output: 61181 reads (100.00%) 14339075 bases (100.00%)
Time: 0.726 seconds.
Reads Processed: 61181 84.31k reads/sec
Bases Processed: 14339k 19.76m bases/sec
java -ea -Xmx200m -cp /home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/bbmap/current/ jgi.ReformatReads in=lane1-s219-index-CAACACCT-AGCCGTAANNNN-75w_S219_L001_R1_trimmed.merge.filt.fastq out=/home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/trimmed_wood/woodFasta/lane1-s219-index-CAACACCT-AGCCGTAANNNN-75w_S219_L001.fasta fastawrap=0
Executing jgi.ReformatReads [in=lane1-s219-index-CAACACCT-AGCCGTAANNNN-75w_S219_L001_R1_trimmed.merge.filt.fastq, out=/home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/trimmed_wood/woodFasta/lane1-s219-index-CAACACCT-AGCCGTAANNNN-75w_S219_L001.fasta, fastawrap=0]
Input is being processed as unpaired
Input: 24691 reads 5951693 bases
Output: 24691 reads (100.00%) 5951693 bases (100.00%)
Time: 0.479 seconds.
Reads Processed: 24691 51.54k reads/sec
Bases Processed: 5951k 12.42m bases/sec
java -ea -Xmx200m -cp /home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/bbmap/current/ jgi.ReformatReads in=lane1-s220-index-CTAGGTGA-CTCCTGAANNNN-76w_S220_L001_R1_trimmed.merge.filt.fastq out=/home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/trimmed_wood/woodFasta/lane1-s220-index-CTAGGTGA-CTCCTGAANNNN-76w_S220_L001.fasta fastawrap=0
Executing jgi.ReformatReads [in=lane1-s220-index-CTAGGTGA-CTCCTGAANNNN-76w_S220_L001_R1_trimmed.merge.filt.fastq, out=/home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/trimmed_wood/woodFasta/lane1-s220-index-CTAGGTGA-CTCCTGAANNNN-76w_S220_L001.fasta, fastawrap=0]
Input is being processed as unpaired
Input: 42984 reads 11182364 bases
Output: 42984 reads (100.00%) 11182364 bases (100.00%)
Time: 0.371 seconds.
Reads Processed: 42984 115.80k reads/sec
Bases Processed: 11182k 30.13m bases/sec
java -ea -Xmx200m -cp /home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/bbmap/current/ jgi.ReformatReads in=lane1-s221-index-ACGACTTG-CTCCTGAANNNN-79w_S221_L001_R1_trimmed.merge.filt.fastq out=/home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/trimmed_wood/woodFasta/lane1-s221-index-ACGACTTG-CTCCTGAANNNN-79w_S221_L001.fasta fastawrap=0
Executing jgi.ReformatReads [in=lane1-s221-index-ACGACTTG-CTCCTGAANNNN-79w_S221_L001_R1_trimmed.merge.filt.fastq, out=/home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/trimmed_wood/woodFasta/lane1-s221-index-ACGACTTG-CTCCTGAANNNN-79w_S221_L001.fasta, fastawrap=0]
Input is being processed as unpaired
Input: 50505 reads 12091847 bases
Output: 50505 reads (100.00%) 12091847 bases (100.00%)
Time: 0.386 seconds.
Reads Processed: 50505 130.67k reads/sec
Bases Processed: 12091k 31.29m bases/sec
java -ea -Xmx200m -cp /home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/bbmap/current/ jgi.ReformatReads in=lane1-s222-index-GCATACAG-CTCCTGAANNNN-81w_S222_L001_R1_trimmed.merge.filt.fastq out=/home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/trimmed_wood/woodFasta/lane1-s222-index-GCATACAG-CTCCTGAANNNN-81w_S222_L001.fasta fastawrap=0
Executing jgi.ReformatReads [in=lane1-s222-index-GCATACAG-CTCCTGAANNNN-81w_S222_L001_R1_trimmed.merge.filt.fastq, out=/home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/trimmed_wood/woodFasta/lane1-s222-index-GCATACAG-CTCCTGAANNNN-81w_S222_L001.fasta, fastawrap=0]
Input is being processed as unpaired
Input: 49211 reads 11893193 bases
Output: 49211 reads (100.00%) 11893193 bases (100.00%)
Time: 0.385 seconds.
Reads Processed: 49211 127.66k reads/sec
Bases Processed: 11893k 30.85m bases/sec
java -ea -Xmx200m -cp /home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/bbmap/current/ jgi.ReformatReads in=lane1-s223-index-TGCGAACT-CTCCTGAANNNN-82w_S223_L001_R1_trimmed.merge.filt.fastq out=/home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/trimmed_wood/woodFasta/lane1-s223-index-TGCGAACT-CTCCTGAANNNN-82w_S223_L001.fasta fastawrap=0
Executing jgi.ReformatReads [in=lane1-s223-index-TGCGAACT-CTCCTGAANNNN-82w_S223_L001_R1_trimmed.merge.filt.fastq, out=/home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/trimmed_wood/woodFasta/lane1-s223-index-TGCGAACT-CTCCTGAANNNN-82w_S223_L001.fasta, fastawrap=0]
Input is being processed as unpaired
Input: 47997 reads 11734415 bases
Output: 47997 reads (100.00%) 11734415 bases (100.00%)
Time: 0.404 seconds.
Reads Processed: 47997 118.81k reads/sec
Bases Processed: 11734k 29.05m bases/sec
java -ea -Xmx200m -cp /home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/bbmap/current/ jgi.ReformatReads in=lane1-s224-index-TCTCCGAT-CTCCTGAANNNN-84w_S224_L001_R1_trimmed.merge.filt.fastq out=/home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/trimmed_wood/woodFasta/lane1-s224-index-TCTCCGAT-CTCCTGAANNNN-84w_S224_L001.fasta fastawrap=0
Executing jgi.ReformatReads [in=lane1-s224-index-TCTCCGAT-CTCCTGAANNNN-84w_S224_L001_R1_trimmed.merge.filt.fastq, out=/home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/trimmed_wood/woodFasta/lane1-s224-index-TCTCCGAT-CTCCTGAANNNN-84w_S224_L001.fasta, fastawrap=0]
Input is being processed as unpaired
Input: 59336 reads 14685640 bases
Output: 59336 reads (100.00%) 14685640 bases (100.00%)
Time: 0.770 seconds.
Reads Processed: 59336 77.10k reads/sec
Bases Processed: 14685k 19.08m bases/sec
java -ea -Xmx200m -cp /home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/bbmap/current/ jgi.ReformatReads in=lane1-s225-index-GAGGACTT-CTCCTGAANNNN-85w_S225_L001_R1_trimmed.merge.filt.fastq out=/home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/trimmed_wood/woodFasta/lane1-s225-index-GAGGACTT-CTCCTGAANNNN-85w_S225_L001.fasta fastawrap=0
Executing jgi.ReformatReads [in=lane1-s225-index-GAGGACTT-CTCCTGAANNNN-85w_S225_L001_R1_trimmed.merge.filt.fastq, out=/home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/trimmed_wood/woodFasta/lane1-s225-index-GAGGACTT-CTCCTGAANNNN-85w_S225_L001.fasta, fastawrap=0]
Input is being processed as unpaired
Input: 41299 reads 9815193 bases
Output: 41299 reads (100.00%) 9815193 bases (100.00%)
Time: 0.350 seconds.
Reads Processed: 41299 117.92k reads/sec
Bases Processed: 9815k 28.02m bases/sec
java -ea -Xmx200m -cp /home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/bbmap/current/ jgi.ReformatReads in=lane1-s226-index-ACCATCCA-CTCCTGAANNNN-86w_S226_L001_R1_trimmed.merge.filt.fastq out=/home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/trimmed_wood/woodFasta/lane1-s226-index-ACCATCCA-CTCCTGAANNNN-86w_S226_L001.fasta fastawrap=0
Executing jgi.ReformatReads [in=lane1-s226-index-ACCATCCA-CTCCTGAANNNN-86w_S226_L001_R1_trimmed.merge.filt.fastq, out=/home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/trimmed_wood/woodFasta/lane1-s226-index-ACCATCCA-CTCCTGAANNNN-86w_S226_L001.fasta, fastawrap=0]
Input is being processed as unpaired
Input: 30271 reads 7521534 bases
Output: 30271 reads (100.00%) 7521534 bases (100.00%)
Time: 0.297 seconds.
Reads Processed: 30271 101.84k reads/sec
Bases Processed: 7521k 25.30m bases/sec
java -ea -Xmx200m -cp /home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/bbmap/current/ jgi.ReformatReads in=lane1-s227-index-CAACACCT-CTCCTGAANNNN-87w_S227_L001_R1_trimmed.merge.filt.fastq out=/home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/trimmed_wood/woodFasta/lane1-s227-index-CAACACCT-CTCCTGAANNNN-87w_S227_L001.fasta fastawrap=0
Executing jgi.ReformatReads [in=lane1-s227-index-CAACACCT-CTCCTGAANNNN-87w_S227_L001_R1_trimmed.merge.filt.fastq, out=/home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/trimmed_wood/woodFasta/lane1-s227-index-CAACACCT-CTCCTGAANNNN-87w_S227_L001.fasta, fastawrap=0]
Input is being processed as unpaired
Input: 25083 reads 6552514 bases
Output: 25083 reads (100.00%) 6552514 bases (100.00%)
Time: 0.488 seconds.
Reads Processed: 25083 51.38k reads/sec
Bases Processed: 6552k 13.42m bases/sec
java -ea -Xmx200m -cp /home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/bbmap/current/ jgi.ReformatReads in=lane1-s228-index-CTAGGTGA-ACGAATCCNNNN-88w_S228_L001_R1_trimmed.merge.filt.fastq out=/home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/trimmed_wood/woodFasta/lane1-s228-index-CTAGGTGA-ACGAATCCNNNN-88w_S228_L001.fasta fastawrap=0
Executing jgi.ReformatReads [in=lane1-s228-index-CTAGGTGA-ACGAATCCNNNN-88w_S228_L001_R1_trimmed.merge.filt.fastq, out=/home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/trimmed_wood/woodFasta/lane1-s228-index-CTAGGTGA-ACGAATCCNNNN-88w_S228_L001.fasta, fastawrap=0]
Input is being processed as unpaired
Input: 62721 reads 16050391 bases
Output: 62721 reads (100.00%) 16050391 bases (100.00%)
Time: 0.448 seconds.
Reads Processed: 62721 139.92k reads/sec
Bases Processed: 16050k 35.81m bases/sec
java -ea -Xmx200m -cp /home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/bbmap/current/ jgi.ReformatReads in=lane1-s229-index-ACGACTTG-ACGAATCCNNNN-89w_S229_L001_R1_trimmed.merge.filt.fastq out=/home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/trimmed_wood/woodFasta/lane1-s229-index-ACGACTTG-ACGAATCCNNNN-89w_S229_L001.fasta fastawrap=0
Executing jgi.ReformatReads [in=lane1-s229-index-ACGACTTG-ACGAATCCNNNN-89w_S229_L001_R1_trimmed.merge.filt.fastq, out=/home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/trimmed_wood/woodFasta/lane1-s229-index-ACGACTTG-ACGAATCCNNNN-89w_S229_L001.fasta, fastawrap=0]
Input is being processed as unpaired
Input: 49122 reads 12916117 bases
Output: 49122 reads (100.00%) 12916117 bases (100.00%)
Time: 0.389 seconds.
Reads Processed: 49122 126.30k reads/sec
Bases Processed: 12916k 33.21m bases/sec
java -ea -Xmx200m -cp /home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/bbmap/current/ jgi.ReformatReads in=lane1-s230-index-GCATACAG-ACGAATCCNNNN-92w_S230_L001_R1_trimmed.merge.filt.fastq out=/home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/trimmed_wood/woodFasta/lane1-s230-index-GCATACAG-ACGAATCCNNNN-92w_S230_L001.fasta fastawrap=0
Executing jgi.ReformatReads [in=lane1-s230-index-GCATACAG-ACGAATCCNNNN-92w_S230_L001_R1_trimmed.merge.filt.fastq, out=/home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/trimmed_wood/woodFasta/lane1-s230-index-GCATACAG-ACGAATCCNNNN-92w_S230_L001.fasta, fastawrap=0]
Input is being processed as unpaired
Input: 44144 reads 10963508 bases
Output: 44144 reads (100.00%) 10963508 bases (100.00%)
Time: 0.374 seconds.
Reads Processed: 44144 117.89k reads/sec
Bases Processed: 10963k 29.28m bases/sec
java -ea -Xmx200m -cp /home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/bbmap/current/ jgi.ReformatReads in=lane1-s231-index-TGCGAACT-ACGAATCCNNNN-93w_S231_L001_R1_trimmed.merge.filt.fastq out=/home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/trimmed_wood/woodFasta/lane1-s231-index-TGCGAACT-ACGAATCCNNNN-93w_S231_L001.fasta fastawrap=0
Executing jgi.ReformatReads [in=lane1-s231-index-TGCGAACT-ACGAATCCNNNN-93w_S231_L001_R1_trimmed.merge.filt.fastq, out=/home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/trimmed_wood/woodFasta/lane1-s231-index-TGCGAACT-ACGAATCCNNNN-93w_S231_L001.fasta, fastawrap=0]
Input is being processed as unpaired
Input: 37202 reads 9266267 bases
Output: 37202 reads (100.00%) 9266267 bases (100.00%)
Time: 0.546 seconds.
Reads Processed: 37202 68.18k reads/sec
Bases Processed: 9266k 16.98m bases/sec
java -ea -Xmx200m -cp /home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/bbmap/current/ jgi.ReformatReads in=lane1-s232-index-TCTCCGAT-ACGAATCCNNNN-94w_S232_L001_R1_trimmed.merge.filt.fastq out=/home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/trimmed_wood/woodFasta/lane1-s232-index-TCTCCGAT-ACGAATCCNNNN-94w_S232_L001.fasta fastawrap=0
Executing jgi.ReformatReads [in=lane1-s232-index-TCTCCGAT-ACGAATCCNNNN-94w_S232_L001_R1_trimmed.merge.filt.fastq, out=/home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/trimmed_wood/woodFasta/lane1-s232-index-TCTCCGAT-ACGAATCCNNNN-94w_S232_L001.fasta, fastawrap=0]
Input is being processed as unpaired
Input: 26731 reads 6784289 bases
Output: 26731 reads (100.00%) 6784289 bases (100.00%)
Time: 0.293 seconds.
Reads Processed: 26731 91.11k reads/sec
Bases Processed: 6784k 23.12m bases/sec
java -ea -Xmx200m -cp /home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/bbmap/current/ jgi.ReformatReads in=lane1-s233-index-GAGGACTT-ACGAATCCNNNN-95w_S233_L001_R1_trimmed.merge.filt.fastq out=/home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/trimmed_wood/woodFasta/lane1-s233-index-GAGGACTT-ACGAATCCNNNN-95w_S233_L001.fasta fastawrap=0
Executing jgi.ReformatReads [in=lane1-s233-index-GAGGACTT-ACGAATCCNNNN-95w_S233_L001_R1_trimmed.merge.filt.fastq, out=/home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/trimmed_wood/woodFasta/lane1-s233-index-GAGGACTT-ACGAATCCNNNN-95w_S233_L001.fasta, fastawrap=0]
Input is being processed as unpaired
Input: 10641 reads 3037417 bases
Output: 10641 reads (100.00%) 3037417 bases (100.00%)
Time: 0.430 seconds.
Reads Processed: 10641 24.75k reads/sec
Bases Processed: 3037k 7.07m bases/sec
java -ea -Xmx200m -cp /home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/bbmap/current/ jgi.ReformatReads in=lane1-s234-index-ACCATCCA-ACGAATCCNNNN-96w_S234_L001_R1_trimmed.merge.filt.fastq out=/home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/trimmed_wood/woodFasta/lane1-s234-index-ACCATCCA-ACGAATCCNNNN-96w_S234_L001.fasta fastawrap=0
Executing jgi.ReformatReads [in=lane1-s234-index-ACCATCCA-ACGAATCCNNNN-96w_S234_L001_R1_trimmed.merge.filt.fastq, out=/home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/trimmed_wood/woodFasta/lane1-s234-index-ACCATCCA-ACGAATCCNNNN-96w_S234_L001.fasta, fastawrap=0]
Input is being processed as unpaired
Input: 21248 reads 5464274 bases
Output: 21248 reads (100.00%) 5464274 bases (100.00%)
Time: 0.271 seconds.
Reads Processed: 21248 78.39k reads/sec
Bases Processed: 5464k 20.16m bases/sec
java -ea -Xmx200m -cp /home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/bbmap/current/ jgi.ReformatReads in=lane1-s235-index-CAACACCT-ACGAATCCNNNN-97w_S235_L001_R1_trimmed.merge.filt.fastq out=/home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/trimmed_wood/woodFasta/lane1-s235-index-CAACACCT-ACGAATCCNNNN-97w_S235_L001.fasta fastawrap=0
Executing jgi.ReformatReads [in=lane1-s235-index-CAACACCT-ACGAATCCNNNN-97w_S235_L001_R1_trimmed.merge.filt.fastq, out=/home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/trimmed_wood/woodFasta/lane1-s235-index-CAACACCT-ACGAATCCNNNN-97w_S235_L001.fasta, fastawrap=0]
Input is being processed as unpaired
Input: 23268 reads 5679623 bases
Output: 23268 reads (100.00%) 5679623 bases (100.00%)
Time: 0.474 seconds.
Reads Processed: 23268 49.11k reads/sec
Bases Processed: 5679k 11.99m bases/sec
java -ea -Xmx200m -cp /home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/bbmap/current/ jgi.ReformatReads in=lane1-s236-index-CTAGGTGA-AATGGTCGNNNN-99w_S236_L001_R1_trimmed.merge.filt.fastq out=/home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/trimmed_wood/woodFasta/lane1-s236-index-CTAGGTGA-AATGGTCGNNNN-99w_S236_L001.fasta fastawrap=0
Executing jgi.ReformatReads [in=lane1-s236-index-CTAGGTGA-AATGGTCGNNNN-99w_S236_L001_R1_trimmed.merge.filt.fastq, out=/home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/trimmed_wood/woodFasta/lane1-s236-index-CTAGGTGA-AATGGTCGNNNN-99w_S236_L001.fasta, fastawrap=0]
Input is being processed as unpaired
Input: 24908 reads 6003207 bases
Output: 24908 reads (100.00%) 6003207 bases (100.00%)
Time: 0.271 seconds.
Reads Processed: 24908 91.87k reads/sec
Bases Processed: 6003k 22.14m bases/sec
java -ea -Xmx200m -cp /home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/bbmap/current/ jgi.ReformatReads in=lane1-s237-index-ACGACTTG-AATGGTCGNNNN-100w_S237_L001_R1_trimmed.merge.filt.fastq out=/home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/trimmed_wood/woodFasta/lane1-s237-index-ACGACTTG-AATGGTCGNNNN-100w_S237_L001.fasta fastawrap=0
Executing jgi.ReformatReads [in=lane1-s237-index-ACGACTTG-AATGGTCGNNNN-100w_S237_L001_R1_trimmed.merge.filt.fastq, out=/home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/trimmed_wood/woodFasta/lane1-s237-index-ACGACTTG-AATGGTCGNNNN-100w_S237_L001.fasta, fastawrap=0]
Input is being processed as unpaired
Input: 24703 reads 6149228 bases
Output: 24703 reads (100.00%) 6149228 bases (100.00%)
Time: 0.278 seconds.
Reads Processed: 24703 88.84k reads/sec
Bases Processed: 6149k 22.12m bases/sec
java -ea -Xmx200m -cp /home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/bbmap/current/ jgi.ReformatReads in=lane1-s238-index-GCATACAG-AATGGTCGNNNN-101w_S238_L001_R1_trimmed.merge.filt.fastq out=/home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/trimmed_wood/woodFasta/lane1-s238-index-GCATACAG-AATGGTCGNNNN-101w_S238_L001.fasta fastawrap=0
Executing jgi.ReformatReads [in=lane1-s238-index-GCATACAG-AATGGTCGNNNN-101w_S238_L001_R1_trimmed.merge.filt.fastq, out=/home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/trimmed_wood/woodFasta/lane1-s238-index-GCATACAG-AATGGTCGNNNN-101w_S238_L001.fasta, fastawrap=0]
Input is being processed as unpaired
Input: 35091 reads 8719762 bases
Output: 35091 reads (100.00%) 8719762 bases (100.00%)
Time: 0.320 seconds.
Reads Processed: 35091 109.55k reads/sec
Bases Processed: 8719k 27.22m bases/sec
java -ea -Xmx200m -cp /home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/bbmap/current/ jgi.ReformatReads in=lane1-s239-index-TGCGAACT-AATGGTCGNNNN-102w_S239_L001_R1_trimmed.merge.filt.fastq out=/home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/trimmed_wood/woodFasta/lane1-s239-index-TGCGAACT-AATGGTCGNNNN-102w_S239_L001.fasta fastawrap=0
Executing jgi.ReformatReads [in=lane1-s239-index-TGCGAACT-AATGGTCGNNNN-102w_S239_L001_R1_trimmed.merge.filt.fastq, out=/home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/trimmed_wood/woodFasta/lane1-s239-index-TGCGAACT-AATGGTCGNNNN-102w_S239_L001.fasta, fastawrap=0]
Input is being processed as unpaired
Input: 26224 reads 6819140 bases
Output: 26224 reads (100.00%) 6819140 bases (100.00%)
Time: 0.296 seconds.
Reads Processed: 26224 88.73k reads/sec
Bases Processed: 6819k 23.07m bases/sec
java -ea -Xmx200m -cp /home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/bbmap/current/ jgi.ReformatReads in=lane1-s240-index-TCTCCGAT-AATGGTCGNNNN-104w_S240_L001_R1_trimmed.merge.filt.fastq out=/home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/trimmed_wood/woodFasta/lane1-s240-index-TCTCCGAT-AATGGTCGNNNN-104w_S240_L001.fasta fastawrap=0
Executing jgi.ReformatReads [in=lane1-s240-index-TCTCCGAT-AATGGTCGNNNN-104w_S240_L001_R1_trimmed.merge.filt.fastq, out=/home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/trimmed_wood/woodFasta/lane1-s240-index-TCTCCGAT-AATGGTCGNNNN-104w_S240_L001.fasta, fastawrap=0]
Input is being processed as unpaired
Input: 36597 reads 9471889 bases
Output: 36597 reads (100.00%) 9471889 bases (100.00%)
Time: 0.359 seconds.
Reads Processed: 36597 101.99k reads/sec
Bases Processed: 9471k 26.40m bases/sec
java -ea -Xmx200m -cp /home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/bbmap/current/ jgi.ReformatReads in=lane1-s241-index-GAGGACTT-AATGGTCGNNNN-106w_S241_L001_R1_trimmed.merge.filt.fastq out=/home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/trimmed_wood/woodFasta/lane1-s241-index-GAGGACTT-AATGGTCGNNNN-106w_S241_L001.fasta fastawrap=0
Executing jgi.ReformatReads [in=lane1-s241-index-GAGGACTT-AATGGTCGNNNN-106w_S241_L001_R1_trimmed.merge.filt.fastq, out=/home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/trimmed_wood/woodFasta/lane1-s241-index-GAGGACTT-AATGGTCGNNNN-106w_S241_L001.fasta, fastawrap=0]
Input is being processed as unpaired
Input: 18100 reads 4518090 bases
Output: 18100 reads (100.00%) 4518090 bases (100.00%)
Time: 0.251 seconds.
Reads Processed: 18100 72.02k reads/sec
Bases Processed: 4518k 17.98m bases/sec
java -ea -Xmx200m -cp /home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/bbmap/current/ jgi.ReformatReads in=lane1-s242-index-ACCATCCA-AATGGTCGNNNN-107w_S242_L001_R1_trimmed.merge.filt.fastq out=/home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/trimmed_wood/woodFasta/lane1-s242-index-ACCATCCA-AATGGTCGNNNN-107w_S242_L001.fasta fastawrap=0
Executing jgi.ReformatReads [in=lane1-s242-index-ACCATCCA-AATGGTCGNNNN-107w_S242_L001_R1_trimmed.merge.filt.fastq, out=/home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/trimmed_wood/woodFasta/lane1-s242-index-ACCATCCA-AATGGTCGNNNN-107w_S242_L001.fasta, fastawrap=0]
Input is being processed as unpaired
Input: 18552 reads 5196874 bases
Output: 18552 reads (100.00%) 5196874 bases (100.00%)
Time: 0.456 seconds.
Reads Processed: 18552 40.65k reads/sec
Bases Processed: 5196k 11.39m bases/sec
java -ea -Xmx200m -cp /home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/bbmap/current/ jgi.ReformatReads in=lane1-s243-index-CAACACCT-AATGGTCGNNNN-108w_S243_L001_R1_trimmed.merge.filt.fastq out=/home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/trimmed_wood/woodFasta/lane1-s243-index-CAACACCT-AATGGTCGNNNN-108w_S243_L001.fasta fastawrap=0
Executing jgi.ReformatReads [in=lane1-s243-index-CAACACCT-AATGGTCGNNNN-108w_S243_L001_R1_trimmed.merge.filt.fastq, out=/home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/trimmed_wood/woodFasta/lane1-s243-index-CAACACCT-AATGGTCGNNNN-108w_S243_L001.fasta, fastawrap=0]
Input is being processed as unpaired
Input: 29723 reads 8509437 bases
Output: 29723 reads (100.00%) 8509437 bases (100.00%)
Time: 0.308 seconds.
Reads Processed: 29723 96.41k reads/sec
Bases Processed: 8509k 27.60m bases/sec
java -ea -Xmx200m -cp /home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/bbmap/current/ jgi.ReformatReads in=lane1-s244-index-CTAGGTGA-CGCTACATNNNN-109w_S244_L001_R1_trimmed.merge.filt.fastq out=/home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/trimmed_wood/woodFasta/lane1-s244-index-CTAGGTGA-CGCTACATNNNN-109w_S244_L001.fasta fastawrap=0
Executing jgi.ReformatReads [in=lane1-s244-index-CTAGGTGA-CGCTACATNNNN-109w_S244_L001_R1_trimmed.merge.filt.fastq, out=/home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/trimmed_wood/woodFasta/lane1-s244-index-CTAGGTGA-CGCTACATNNNN-109w_S244_L001.fasta, fastawrap=0]
Input is being processed as unpaired
Input: 29872 reads 7567558 bases
Output: 29872 reads (100.00%) 7567558 bases (100.00%)
Time: 0.305 seconds.
Reads Processed: 29872 97.83k reads/sec
Bases Processed: 7567k 24.78m bases/sec
java -ea -Xmx200m -cp /home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/bbmap/current/ jgi.ReformatReads in=lane1-s245-index-ACGACTTG-CGCTACATNNNN-114w_S245_L001_R1_trimmed.merge.filt.fastq out=/home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/trimmed_wood/woodFasta/lane1-s245-index-ACGACTTG-CGCTACATNNNN-114w_S245_L001.fasta fastawrap=0
Executing jgi.ReformatReads [in=lane1-s245-index-ACGACTTG-CGCTACATNNNN-114w_S245_L001_R1_trimmed.merge.filt.fastq, out=/home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/trimmed_wood/woodFasta/lane1-s245-index-ACGACTTG-CGCTACATNNNN-114w_S245_L001.fasta, fastawrap=0]
Input is being processed as unpaired
Input: 21261 reads 5458254 bases
Output: 21261 reads (100.00%) 5458254 bases (100.00%)
Time: 0.270 seconds.
Reads Processed: 21261 78.76k reads/sec
Bases Processed: 5458k 20.22m bases/sec
java -ea -Xmx200m -cp /home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/bbmap/current/ jgi.ReformatReads in=lane1-s246-index-GCATACAG-CGCTACATNNNN-115w_S246_L001_R1_trimmed.merge.filt.fastq out=/home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/trimmed_wood/woodFasta/lane1-s246-index-GCATACAG-CGCTACATNNNN-115w_S246_L001.fasta fastawrap=0
Executing jgi.ReformatReads [in=lane1-s246-index-GCATACAG-CGCTACATNNNN-115w_S246_L001_R1_trimmed.merge.filt.fastq, out=/home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/trimmed_wood/woodFasta/lane1-s246-index-GCATACAG-CGCTACATNNNN-115w_S246_L001.fasta, fastawrap=0]
Input is being processed as unpaired
Input: 30651 reads 7604374 bases
Output: 30651 reads (100.00%) 7604374 bases (100.00%)
Time: 0.331 seconds.
Reads Processed: 30651 92.52k reads/sec
Bases Processed: 7604k 22.96m bases/sec
java -ea -Xmx200m -cp /home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/bbmap/current/ jgi.ReformatReads in=lane1-s247-index-TGCGAACT-CGCTACATNNNN-121w_S247_L001_R1_trimmed.merge.filt.fastq out=/home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/trimmed_wood/woodFasta/lane1-s247-index-TGCGAACT-CGCTACATNNNN-121w_S247_L001.fasta fastawrap=0
Executing jgi.ReformatReads [in=lane1-s247-index-TGCGAACT-CGCTACATNNNN-121w_S247_L001_R1_trimmed.merge.filt.fastq, out=/home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/trimmed_wood/woodFasta/lane1-s247-index-TGCGAACT-CGCTACATNNNN-121w_S247_L001.fasta, fastawrap=0]
Input is being processed as unpaired
Input: 47719 reads 13825315 bases
Output: 47719 reads (100.00%) 13825315 bases (100.00%)
Time: 0.448 seconds.
Reads Processed: 47719 106.50k reads/sec
Bases Processed: 13825k 30.85m bases/sec
java -ea -Xmx200m -cp /home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/bbmap/current/ jgi.ReformatReads in=lane1-s248-index-TCTCCGAT-CGCTACATNNNN-124w_S248_L001_R1_trimmed.merge.filt.fastq out=/home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/trimmed_wood/woodFasta/lane1-s248-index-TCTCCGAT-CGCTACATNNNN-124w_S248_L001.fasta fastawrap=0
Executing jgi.ReformatReads [in=lane1-s248-index-TCTCCGAT-CGCTACATNNNN-124w_S248_L001_R1_trimmed.merge.filt.fastq, out=/home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/trimmed_wood/woodFasta/lane1-s248-index-TCTCCGAT-CGCTACATNNNN-124w_S248_L001.fasta, fastawrap=0]
Input is being processed as unpaired
Input: 35793 reads 8767687 bases
Output: 35793 reads (100.00%) 8767687 bases (100.00%)
Time: 0.343 seconds.
Reads Processed: 35793 104.40k reads/sec
Bases Processed: 8767k 25.57m bases/sec
java -ea -Xmx200m -cp /home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/bbmap/current/ jgi.ReformatReads in=lane1-s249-index-GAGGACTT-CGCTACATNNNN-125w_S249_L001_R1_trimmed.merge.filt.fastq out=/home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/trimmed_wood/woodFasta/lane1-s249-index-GAGGACTT-CGCTACATNNNN-125w_S249_L001.fasta fastawrap=0
Executing jgi.ReformatReads [in=lane1-s249-index-GAGGACTT-CGCTACATNNNN-125w_S249_L001_R1_trimmed.merge.filt.fastq, out=/home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/trimmed_wood/woodFasta/lane1-s249-index-GAGGACTT-CGCTACATNNNN-125w_S249_L001.fasta, fastawrap=0]
Input is being processed as unpaired
Input: 44891 reads 10664168 bases
Output: 44891 reads (100.00%) 10664168 bases (100.00%)
Time: 0.563 seconds.
Reads Processed: 44891 79.69k reads/sec
Bases Processed: 10664k 18.93m bases/sec
java -ea -Xmx200m -cp /home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/bbmap/current/ jgi.ReformatReads in=lane1-s250-index-ACCATCCA-CGCTACATNNNN-128w_S250_L001_R1_trimmed.merge.filt.fastq out=/home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/trimmed_wood/woodFasta/lane1-s250-index-ACCATCCA-CGCTACATNNNN-128w_S250_L001.fasta fastawrap=0
Executing jgi.ReformatReads [in=lane1-s250-index-ACCATCCA-CGCTACATNNNN-128w_S250_L001_R1_trimmed.merge.filt.fastq, out=/home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/trimmed_wood/woodFasta/lane1-s250-index-ACCATCCA-CGCTACATNNNN-128w_S250_L001.fasta, fastawrap=0]
Input is being processed as unpaired
Input: 48829 reads 12922422 bases
Output: 48829 reads (100.00%) 12922422 bases (100.00%)
Time: 0.630 seconds.
Reads Processed: 48829 77.47k reads/sec
Bases Processed: 12922k 20.50m bases/sec
java -ea -Xmx200m -cp /home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/bbmap/current/ jgi.ReformatReads in=lane1-s251-index-CAACACCT-CGCTACATNNNN-129w_S251_L001_R1_trimmed.merge.filt.fastq out=/home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/trimmed_wood/woodFasta/lane1-s251-index-CAACACCT-CGCTACATNNNN-129w_S251_L001.fasta fastawrap=0
Executing jgi.ReformatReads [in=lane1-s251-index-CAACACCT-CGCTACATNNNN-129w_S251_L001_R1_trimmed.merge.filt.fastq, out=/home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/trimmed_wood/woodFasta/lane1-s251-index-CAACACCT-CGCTACATNNNN-129w_S251_L001.fasta, fastawrap=0]
Input is being processed as unpaired
Input: 36013 reads 8829441 bases
Output: 36013 reads (100.00%) 8829441 bases (100.00%)
Time: 0.534 seconds.
Reads Processed: 36013 67.44k reads/sec
Bases Processed: 8829k 16.54m bases/sec
java -ea -Xmx200m -cp /home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/bbmap/current/ jgi.ReformatReads in=lane1-s252-index-CTAGGTGA-CCTAAGTCNNNN-130w_S252_L001_R1_trimmed.merge.filt.fastq out=/home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/trimmed_wood/woodFasta/lane1-s252-index-CTAGGTGA-CCTAAGTCNNNN-130w_S252_L001.fasta fastawrap=0
Executing jgi.ReformatReads [in=lane1-s252-index-CTAGGTGA-CCTAAGTCNNNN-130w_S252_L001_R1_trimmed.merge.filt.fastq, out=/home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/trimmed_wood/woodFasta/lane1-s252-index-CTAGGTGA-CCTAAGTCNNNN-130w_S252_L001.fasta, fastawrap=0]
Input is being processed as unpaired
Input: 18551 reads 4500023 bases
Output: 18551 reads (100.00%) 4500023 bases (100.00%)
Time: 0.271 seconds.
Reads Processed: 18551 68.48k reads/sec
Bases Processed: 4500k 16.61m bases/sec
java -ea -Xmx200m -cp /home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/bbmap/current/ jgi.ReformatReads in=lane1-s253-index-ACGACTTG-CCTAAGTCNNNN-131w_S253_L001_R1_trimmed.merge.filt.fastq out=/home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/trimmed_wood/woodFasta/lane1-s253-index-ACGACTTG-CCTAAGTCNNNN-131w_S253_L001.fasta fastawrap=0
Executing jgi.ReformatReads [in=lane1-s253-index-ACGACTTG-CCTAAGTCNNNN-131w_S253_L001_R1_trimmed.merge.filt.fastq, out=/home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/trimmed_wood/woodFasta/lane1-s253-index-ACGACTTG-CCTAAGTCNNNN-131w_S253_L001.fasta, fastawrap=0]
Input is being processed as unpaired
Input: 31741 reads 7315738 bases
Output: 31741 reads (100.00%) 7315738 bases (100.00%)
Time: 0.297 seconds.
Reads Processed: 31741 106.96k reads/sec
Bases Processed: 7315k 24.65m bases/sec
java -ea -Xmx200m -cp /home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/bbmap/current/ jgi.ReformatReads in=lane1-s254-index-GCATACAG-CCTAAGTCNNNN-133w_S254_L001_R1_trimmed.merge.filt.fastq out=/home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/trimmed_wood/woodFasta/lane1-s254-index-GCATACAG-CCTAAGTCNNNN-133w_S254_L001.fasta fastawrap=0
Executing jgi.ReformatReads [in=lane1-s254-index-GCATACAG-CCTAAGTCNNNN-133w_S254_L001_R1_trimmed.merge.filt.fastq, out=/home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/trimmed_wood/woodFasta/lane1-s254-index-GCATACAG-CCTAAGTCNNNN-133w_S254_L001.fasta, fastawrap=0]
Input is being processed as unpaired
Input: 37523 reads 9979333 bases
Output: 37523 reads (100.00%) 9979333 bases (100.00%)
Time: 0.560 seconds.
Reads Processed: 37523 67.01k reads/sec
Bases Processed: 9979k 17.82m bases/sec
java -ea -Xmx200m -cp /home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/bbmap/current/ jgi.ReformatReads in=lane1-s255-index-TGCGAACT-CCTAAGTCNNNN-Neg_S255_L001_R1_trimmed.merge.filt.fastq out=/home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/trimmed_wood/woodFasta/lane1-s255-index-TGCGAACT-CCTAAGTCNNNN-Neg_S255_L001.fasta fastawrap=0
Executing jgi.ReformatReads [in=lane1-s255-index-TGCGAACT-CCTAAGTCNNNN-Neg_S255_L001_R1_trimmed.merge.filt.fastq, out=/home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/trimmed_wood/woodFasta/lane1-s255-index-TGCGAACT-CCTAAGTCNNNN-Neg_S255_L001.fasta, fastawrap=0]
Input is being processed as unpaired
Input: 1514 reads 371147 bases
Output: 1514 reads (100.00%) 371147 bases (100.00%)
Time: 0.156 seconds.
Reads Processed: 1514 9.72k reads/sec
Bases Processed: 371k 2.38m bases/sec
java -ea -Xmx200m -cp /home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/bbmap/current/ jgi.ReformatReads in=lane1-s256-index-TCTCCGAT-CCTAAGTCNNNN-PosG_S256_L001_R1_trimmed.merge.filt.fastq out=/home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/trimmed_wood/woodFasta/lane1-s256-index-TCTCCGAT-CCTAAGTCNNNN-PosG_S256_L001.fasta fastawrap=0
Executing jgi.ReformatReads [in=lane1-s256-index-TCTCCGAT-CCTAAGTCNNNN-PosG_S256_L001_R1_trimmed.merge.filt.fastq, out=/home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/trimmed_wood/woodFasta/lane1-s256-index-TCTCCGAT-CCTAAGTCNNNN-PosG_S256_L001.fasta, fastawrap=0]
Input is being processed as unpaired
Input: 60280 reads 15209056 bases
Output: 60280 reads (100.00%) 15209056 bases (100.00%)
Time: 0.415 seconds.
Reads Processed: 60280 145.29k reads/sec
Bases Processed: 15209k 36.66m bases/sec
java -ea -Xmx200m -cp /home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/bbmap/current/ jgi.ReformatReads in=lane1-s257-index-GAGGACTT-CCTAAGTCNNNN-PosI_S257_L001_R1_trimmed.merge.filt.fastq out=/home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/trimmed_wood/woodFasta/lane1-s257-index-GAGGACTT-CCTAAGTCNNNN-PosI_S257_L001.fasta fastawrap=0
Executing jgi.ReformatReads [in=lane1-s257-index-GAGGACTT-CCTAAGTCNNNN-PosI_S257_L001_R1_trimmed.merge.filt.fastq, out=/home/daniel/Documents/submissions/taibioinfo/taiwan_combined_biom/trimmed_wood/woodFasta/lane1-s257-index-GAGGACTT-CCTAAGTCNNNN-PosI_S257_L001.fasta, fastawrap=0]
Input is being processed as unpaired
Input: 40424 reads 10530033 bases
Output: 40424 reads (100.00%) 10530033 bases (100.00%)
Time: 0.354 seconds.
Reads Processed: 40424 114.13k reads/sec
Bases Processed: 10530k 29.73m bases/sec