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CHANGELOG.md

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utilities 0.1.3

  • mapping/process_smartseq2_auto: Strip trailing slashes from id.

  • mapping/process_10x_auto: Strip trailing slashes from id.

  • mapping/process_10x_auto: Fix regex not detecting fastq files not containing _L001.

  • Switch to development build of OpenPipelines (pre0.9.0).

utilities 0.1.2

  • operations/create_runner_script: Add workaround for submodule being unintentionally removed when 'nextflow pull' is not run beforehand.

  • mapping/process_smartseq2_auto: Added above workaround to helper script.

  • mapping/process_10x_auto: Added above workaround to helper script.

utilities 0.1.1

  • mapping/process_smartseq2_auto: Allow grouping input fastqs per folder or via a custom regex statement.

  • mapping/process_smartseq2_auto: Add more documentation to the arguments to clarify regex usage.

utilities 0.1.0

First release of the utilities as a Viash+Nextflow pipeline.

  • mapping/process_10x: Mapping 10x samples
  • mapping/process_10x_auto: Map all 10x Fastq files in a directory.
  • mapping/process_smartseq2: Mapping smartseq2 samples
  • mapping/process_smartseq2_auto: Map all smartseq2 Fastq files in a directory.