monthly-update.yml

name: Monthly Update

on:
  schedule:
    - cron: '0 0 25 * *'  # Runs at 00:00 on the 25th day of each month
  workflow_dispatch:  # Allows manual triggering for testing

jobs:
  update:
    runs-on: ubuntu-latest

    steps:
    - name: Checkout repository
      uses: actions/checkout@v2

    - name: Set up Python
      uses: actions/setup-python@v2
      with:
        python-version: '3.x'

    - name: Install dependencies
      run: |
        python -m pip install --upgrade pip
        pip install -r www/python/src/requirements.txt

    - name: Run fetch_wikipedia_genes
      run: python www/python/src/fetch_wikipedia_genes.py

   - name: Run generate_gmt
     run: python www/python/src/generate_gmt.py

    - name: Commit changes
      run: |
        git config --local user.email "tiago.lubiana.alves@usp.br"
        git config --local user.name "Tiago Lubiana"
        git add .
        git commit -m "Monthly update: fetch genes and generate GMT"
      env:
        GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}

    - name: Bump version and push
      run: |
        pip install bump2version
        bump2version minor --allow-dirty --commit --tag --verbose
        git push --follow-tags
      env:
        GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}