pangolin v2.1.3

Release notes

• Alteration to the snp assignment, now also overwrites model assignment if the appropriate SNPs are lacking for B.1.1.7 and B.1.351

pangolin v2.1.2

Release notes

• pangolin assignment updated to explicitly account for ambiguities in data.
• Of the 17 mutations on the basal B.1.1.7 branch, a minimum of 5 SNPs are required for assignment as B.1.1.7.
• Of the 5 mutations of the basal B.1.351 branch, a minimum of 4 SNPs are required for assignment as B.1.351.

pangolin v2.1.1

Update env to latest pangoLEARN release (2020-12-17)

pangolin v2.1.0

Release notes

Update to python 3.7

pangolin v2.0.11

Release notes

Looks for latest pangoLEARN model

pangolin v2.0.10

Specifies most recent pangoLEARN for cgps to trigger env update

pangolin v2.0.9

Release notes

Minor release with update to --panGUIlin, that looks for sample_date now instead of sample date

pangolin v2.0.8

Release notes

• Minor release with a pangolearn.py bug fix (#100 )
• PuLP>=2.0 specified for updated PuLP support (#98 )

pangolin v2.0.7

Minor bug fix, header names now match changed names in pangoLEARN repo for panGUIlin.

pangolin v2.0.6

Release notes

Minor change to pangolin, with updates to header and trained model file names.