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Releases: cov-lineages/pangolin

pangolin v2.1.3

23 Dec 21:22
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  • Alteration to the snp assignment, now also overwrites model assignment if the appropriate SNPs are lacking for B.1.1.7 and B.1.351

pangolin v2.1.2

22 Dec 14:38
29a81e9
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  • pangolin assignment updated to explicitly account for ambiguities in data.
  • Of the 17 mutations on the basal B.1.1.7 branch, a minimum of 5 SNPs are required for assignment as B.1.1.7.
  • Of the 5 mutations of the basal B.1.351 branch, a minimum of 4 SNPs are required for assignment as B.1.351.

pangolin v2.1.1

18 Dec 10:49
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Update env to latest pangoLEARN release (2020-12-17)

pangolin v2.1.0

12 Dec 12:41
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Update to python 3.7

pangolin v2.0.11

12 Dec 10:25
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Looks for latest pangoLEARN model

pangolin v2.0.10

09 Dec 15:50
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Specifies most recent pangoLEARN for cgps to trigger env update

pangolin v2.0.9

09 Dec 15:46
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Minor release with update to --panGUIlin, that looks for sample_date now instead of sample date

pangolin v2.0.8

08 Oct 14:37
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  • Minor release with a pangolearn.py bug fix (#100 )
  • PuLP>=2.0 specified for updated PuLP support (#98 )

pangolin v2.0.7

15 Sep 07:27
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Minor bug fix, header names now match changed names in pangoLEARN repo for panGUIlin.

pangolin v2.0.6

14 Sep 20:53
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Minor change to pangolin, with updates to header and trained model file names.