XEC+Orf1a:A599T+S:T572I(54 seqs, >10 places)

[xz-keg]

S:T572I is the top mutation predicted by the mutation GPT on XEC backbone, and there are really multiple S:T572I lineages emerging.

From sars-cov-2-variants/lineage-proposals#2087
XEC+G2060A(Orf1a:A599T)+C23277T(S:T572I)

GISAID query: G2060A, C23277T,C18657T,-14106,-G2272A,-24034 (may include more -s as convergent going on)
No. of seqs: 18(Australia 10(SA,QLD,NSW), Netherlands 1 Italy 1 Spain 1 Sweden 2 UK 1 USA 2(GBW from New Zealand))

First: EPI_ISL_19448172, Italy, 2024-8-25
Latest: EPI_ISL_19472822, USA from New Zealand, 2024-9-30

usher

[FedeGueli]

One of the fastest lets see what it will do outside Australia

[FedeGueli]

20 with G2060A, C23277T,C18657T,-14106,-G2272A but one sample is ENV/Germany and it seems a mix of multiple lineages

[FedeGueli]

20 Netherlands

[xz-keg]

+2 Australia-WA

[FedeGueli]

tenth sample was from California

[FedeGueli]

26, NZL

[FedeGueli]

29

[FedeGueli]

query changed

[xz-keg]

query changed

to what?

[FedeGueli]

query changed

to what?

in comparison to the previous one the query has one more -s, or just i forgot to add it in the previous step.

[xz-keg]

32, Germany

[xz-keg]

Decent 20% advantage than XEC

[FedeGueli]

20% advantage

Only low CI is reliable , anyway looking at onky this lineage i see it as fast XEC not faster or just slighty faster : https://cov-spectrum.org/explore/World/AllSamples/Past3M/variants?%2FAllSamples%2FPast3M%2Fvariants%3FnextcladePangoLineage=JN.1*&nextcladePangoLineage=XEC*&nucMutations1=G2060A%2CC23277T%2CC18657T%2C14106C%2CG2272G%2C24034C&analysisMode=CompareToBaseline&

[FedeGueli]

37

[xz-keg]

also in Australia-WA

[xz-keg]

54, Slovenia