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XEC+Orf1a:A599T+S:T572I(54 seqs, >10 places) #2803
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One of the fastest lets see what it will do outside Australia |
20 with G2060A, C23277T,C18657T,-14106,-G2272A but one sample is ENV/Germany and it seems a mix of multiple lineages |
20 Netherlands |
+2 Australia-WA |
tenth sample was from California |
26, NZL |
29 |
query changed |
to what? |
in comparison to the previous one the query has one more -s, or just i forgot to add it in the previous step. |
32, Germany |
Only low CI is reliable , anyway looking at onky this lineage i see it as fast XEC not faster or just slighty faster : https://cov-spectrum.org/explore/World/AllSamples/Past3M/variants?%2FAllSamples%2FPast3M%2Fvariants%3FnextcladePangoLineage=JN.1*&nextcladePangoLineage=XEC*&nucMutations1=G2060A%2CC23277T%2CC18657T%2C14106C%2CG2272G%2C24034C&analysisMode=CompareToBaseline& |
37 |
also in Australia-WA |
54, Slovenia |
S:T572I is the top mutation predicted by the mutation GPT on XEC backbone, and there are really multiple S:T572I lineages emerging.
From sars-cov-2-variants/lineage-proposals#2087
XEC+G2060A(Orf1a:A599T)+C23277T(S:T572I)
GISAID query: G2060A, C23277T,C18657T,-14106,-G2272A,-24034 (may include more -s as convergent going on)
No. of seqs: 18(Australia 10(SA,QLD,NSW), Netherlands 1 Italy 1 Spain 1 Sweden 2 UK 1 USA 2(GBW from New Zealand))
First: EPI_ISL_19448172, Italy, 2024-8-25
Latest: EPI_ISL_19472822, USA from New Zealand, 2024-9-30
usher
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